X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignmentPanel.java;h=2b4c0dbc3fbc34eb84b6d225dcbc401d790c985f;hp=f7c465cdc4cfc6e785c893b2983b4fe18a14dcb8;hb=bbfdb203ce3a889600caa52478478b75ab03809f;hpb=7aa643222eefde760ffe621bc1e04ca50713f66e

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index f7c465c..2b4c0db 100644
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -1357,6 +1357,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
     boolean cons = av.isShowGroupConsensus();
     boolean showprf = av.isShowSequenceLogo();
     boolean showConsHist = av.isShowConsensusHistogram();
+    boolean normLogo = av.isNormaliseSequenceLogo();
 
     boolean sortg = true;
 
@@ -1392,6 +1393,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
           // set defaults for this group's conservation/consensus
           sg.setshowSequenceLogo(showprf);
           sg.setShowConsensusHistogram(showConsHist);
+          sg.setNormaliseSequenceLogo(normLogo);
         }
         if (conv)
         {