X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fgff%2FInterProScanHelper.java;h=c05593f5a2b6a9951dca3c81e509d4b513a01d65;hp=e1334e1df0a8b16c4178b2517e968d7c1b4dbf09;hb=3d0101179759ef157b088ea135423cd909512d9f;hpb=7c70cb09e9de68ab567e38520d6d09f0c17a3939 diff --git a/src/jalview/io/gff/InterProScanHelper.java b/src/jalview/io/gff/InterProScanHelper.java index e1334e1..c05593f 100644 --- a/src/jalview/io/gff/InterProScanHelper.java +++ b/src/jalview/io/gff/InterProScanHelper.java @@ -73,8 +73,8 @@ public class InterProScanHelper extends Gff3Helper } /** - * - */ + * + */ @Override protected SequenceFeature buildSequenceFeature(String[] gff, Map> attributes) @@ -112,8 +112,8 @@ public class InterProScanHelper extends Gff3Helper SequenceOntologyI so = SequenceOntologyFactory.getInstance(); String type = columns[TYPE_COL]; if (so.isA(type, SequenceOntologyI.PROTEIN_MATCH) - || (".".equals(columns[SOURCE_COL]) && so.isA(type, - SequenceOntologyI.POLYPEPTIDE))) + || (".".equals(columns[SOURCE_COL]) + && so.isA(type, SequenceOntologyI.POLYPEPTIDE))) { return true; } @@ -125,7 +125,8 @@ public class InterProScanHelper extends Gff3Helper * GFF field 'ID' rather than the usual 'Target' :-O */ @Override - protected String findTargetId(String target, Map> set) + protected String findTargetId(String target, + Map> set) { List ids = set.get(ID); if (ids == null || ids.size() != 1)