X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGDesktop.java;h=e0467836f8f1caabc00ee1083b84178bed131214;hp=c0b247b4cd1a3d9a910ec4f09c1e756f37edd31c;hb=68c8a239acd5ff30ef4d8f00dfd9d15bf4923b6b;hpb=9bea55eea55110a19b17d0127903802013fa60ea

diff --git a/src/jalview/jbgui/GDesktop.java b/src/jalview/jbgui/GDesktop.java
index c0b247b..e046783 100755
--- a/src/jalview/jbgui/GDesktop.java
+++ b/src/jalview/jbgui/GDesktop.java
@@ -1,156 +1,619 @@
-/********************
- * 2004 Jalview Reengineered
- * Barton Group
- * Dundee University
- *
- * AM Waterhouse
- *******************/
-
-package jalview.jbgui;
-
-import javax.swing.*;
-import java.awt.event.*;
-import java.awt.*;
-
-
-public class GDesktop extends JFrame
-{
-  JMenuBar DesktopMenubar = new JMenuBar();
-  JMenu FileMenu = new JMenu();
-  JMenu HelpMenu = new JMenu();
-  JMenuItem inputLocalFileMenuItem = new JMenuItem();
-  JMenuItem inputURLMenuItem = new JMenuItem();
-  JMenuItem inputTextboxMenuItem = new JMenuItem();
-  JMenuItem quit = new JMenuItem();
-  JMenuItem aboutMenuItem = new JMenuItem();
-  JMenuItem documentationMenuItem = new JMenuItem();
-  FlowLayout flowLayout1 = new FlowLayout();
-  protected static JMenu windowMenu = new JMenu();
-  JMenu toolsMenu = new JMenu();
-  JMenuItem preferences = new JMenuItem();
-  public GDesktop()
-  {
-    try
-    {
-      jbInit();
-      this.setJMenuBar(DesktopMenubar);
-    }
-    catch(Exception e)
-    {
-      e.printStackTrace();
-    }
-
-  }
-  private void jbInit() throws Exception
-  {
-    FileMenu.setMnemonic('F');
-    FileMenu.setText("File");
-    HelpMenu.setText("Help");
-    inputLocalFileMenuItem.setMnemonic('L');
-    inputLocalFileMenuItem.setText("Input Alignment From Local File");
-    inputLocalFileMenuItem.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        inputLocalFileMenuItem_actionPerformed(e);
-      }
-    });
-    inputURLMenuItem.setMnemonic('U');
-    inputURLMenuItem.setText("Input Alignment From URL");
-    inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        inputURLMenuItem_actionPerformed(e);
-      }
-    });
-    inputTextboxMenuItem.setMnemonic('T');
-    inputTextboxMenuItem.setText("Input Alignment via Textbox");
-    inputTextboxMenuItem.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        inputTextboxMenuItem_actionPerformed(e);
-      }
-    });
-    quit.setMnemonic('Q');
-    quit.setText("Quit");
-    quit.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        quit_actionPerformed(e);
-      }
-    });
-    aboutMenuItem.setText("About");
-    aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        aboutMenuItem_actionPerformed(e);
-      }
-    });
-    documentationMenuItem.setText("Documentation");
-    documentationMenuItem.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        documentationMenuItem_actionPerformed(e);
-      }
-    });
-    this.getContentPane().setLayout(flowLayout1);
-    windowMenu.setText("Window");
-    preferences.setText("Preferences...");
-    preferences.addActionListener(new ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-
-        preferences_actionPerformed(e);
-      }
-    });
-    toolsMenu.setText("Tools");
-    DesktopMenubar.add(FileMenu);
-    DesktopMenubar.add(toolsMenu);
-    DesktopMenubar.add(HelpMenu);
-    DesktopMenubar.add(windowMenu);
-    FileMenu.addSeparator();
-    FileMenu.add(inputLocalFileMenuItem);
-    FileMenu.add(inputURLMenuItem);
-    FileMenu.add(inputTextboxMenuItem);
-    FileMenu.addSeparator();
-    FileMenu.add(quit);
-    HelpMenu.add(aboutMenuItem);
-    HelpMenu.add(documentationMenuItem);
-    toolsMenu.add(preferences);
-
-  }
-
-  protected void inputLocalFileMenuItem_actionPerformed(ActionEvent e)
-  { }
-
-  protected void inputURLMenuItem_actionPerformed(ActionEvent e)
-  {  }
-
-  protected void inputTextboxMenuItem_actionPerformed(ActionEvent e)
-  { }
-
-  protected void quit_actionPerformed(ActionEvent e)
-  {  }
-
-  protected void aboutMenuItem_actionPerformed(ActionEvent e)
-  { }
-
-  protected void documentationMenuItem_actionPerformed(ActionEvent e)
-  {  }
-
-  public void SaveState_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void preferences_actionPerformed(ActionEvent e)
-  {
-
-  }
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.jbgui;
+
+import java.awt.FlowLayout;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+
+import javax.swing.JCheckBoxMenuItem;
+import javax.swing.JFrame;
+import javax.swing.JMenu;
+import javax.swing.JMenuBar;
+import javax.swing.JMenuItem;
+
+import jalview.api.AlignmentViewPanel;
+import jalview.bin.Cache;
+import jalview.io.FileFormatException;
+import jalview.util.MessageManager;
+import jalview.util.Platform;
+
+/**
+ * DOCUMENT ME!
+ * 
+ * @author $author$
+ * @version $Revision$
+ */
+@SuppressWarnings("serial")
+public class GDesktop extends JFrame
+{
+
+  protected static JMenu windowMenu = new JMenu();
+
+  JMenuBar desktopMenubar = new JMenuBar();
+
+  JMenu FileMenu = new JMenu();
+
+  JMenu HelpMenu = new JMenu();
+
+  JMenuItem inputLocalFileMenuItem = new JMenuItem();
+
+  JMenuItem inputURLMenuItem = new JMenuItem();
+
+  JMenuItem inputTextboxMenuItem = new JMenuItem();
+
+  JMenuItem quit = new JMenuItem();
+
+  JMenuItem aboutMenuItem = new JMenuItem();
+
+  JMenuItem documentationMenuItem = new JMenuItem();
+
+  FlowLayout flowLayout1 = new FlowLayout();
+
+  protected JMenu toolsMenu = new JMenu();
+
+  JMenuItem preferences = new JMenuItem();
+
+  JMenuItem saveState = new JMenuItem();
+
+  JMenuItem saveAsState = new JMenuItem();
+
+  JMenuItem loadState = new JMenuItem();
+
+  JMenu inputMenu = new JMenu();
+
+  JMenuItem inputSequence = new JMenuItem();
+
+  JMenuItem closeAll = new JMenuItem();
+
+  JMenuItem raiseRelated = new JMenuItem();
+
+  JMenuItem minimizeAssociated = new JMenuItem();
+
+  protected JCheckBoxMenuItem showMemusage = new JCheckBoxMenuItem();
+
+  JMenuItem garbageCollect = new JMenuItem();
+
+  protected JMenuItem groovyShell;
+
+  protected JCheckBoxMenuItem experimentalFeatures;
+
+  protected JCheckBoxMenuItem showConsole = new JCheckBoxMenuItem();
+
+  protected JCheckBoxMenuItem showNews = new JCheckBoxMenuItem();
+
+  protected JMenuItem snapShotWindow = new JMenuItem();
+
+  /**
+   * Creates a new GDesktop object.
+   */
+  public GDesktop()
+  {
+    super();
+    try
+    {
+      jbInit();
+      this.setJMenuBar(desktopMenubar);
+    } catch (Exception e)
+    {
+      e.printStackTrace();
+    }
+
+    if (Platform.allowMnemonics())
+    {
+      // BH was !Platform.isAMacAndNotJS()) i.e. "JS or not Mac"
+      // but here we want just not a Mac, period, right?
+      FileMenu.setMnemonic('F');
+      inputLocalFileMenuItem.setMnemonic('L');
+      inputURLMenuItem.setMnemonic('U');
+      inputTextboxMenuItem.setMnemonic('C');
+      quit.setMnemonic('Q');
+      saveState.setMnemonic('S');
+      loadState.setMnemonic('L');
+      inputMenu.setMnemonic('I');
+    }
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @throws Exception
+   *           DOCUMENT ME!
+   */
+  private void jbInit() throws Exception
+  {
+    /**
+     * APQHandlers sets handlers for About, Preferences and Quit actions
+     * peculiar to macOS's application menu. APQHandlers will check to see if a
+     * handler is supported before setting it.
+     */
+    try
+    {
+      APQHandlers.setAPQHandlers(this);
+    } catch (Exception e)
+    {
+      System.out.println("Cannot set APQHandlers");
+      // e.printStackTrace();
+    } catch (Throwable t)
+    {
+      jalview.bin.Console
+              .warn("Error setting APQHandlers: " + t.toString());
+      jalview.bin.Console.trace(Cache.getStackTraceString(t));
+    }
+
+    setName("jalview-desktop");
+    FileMenu.setText(MessageManager.getString("action.file"));
+    HelpMenu.setText(MessageManager.getString("action.help"));
+    inputLocalFileMenuItem
+            .setText(MessageManager.getString("label.load_tree_from_file"));
+    inputLocalFileMenuItem
+            .setAccelerator(
+                    javax.swing.KeyStroke
+                            .getKeyStroke(java.awt.event.KeyEvent.VK_O,
+                                    jalview.util.ShortcutKeyMaskExWrapper
+                                            .getMenuShortcutKeyMaskEx(),
+                                    false));
+    inputLocalFileMenuItem
+            .addActionListener(new java.awt.event.ActionListener()
+            {
+              @Override
+              public void actionPerformed(ActionEvent e)
+              {
+                inputLocalFileMenuItem_actionPerformed(null);
+              }
+            });
+    inputURLMenuItem.setText(MessageManager.getString("label.from_url"));
+    inputURLMenuItem.addActionListener(new java.awt.event.ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        try
+        {
+          inputURLMenuItem_actionPerformed(null);
+        } catch (FileFormatException e1)
+        {
+          System.err.println("Error loading from URL: " + e1.getMessage());
+        }
+      }
+    });
+    inputTextboxMenuItem
+            .setText(MessageManager.getString("label.from_textbox"));
+    inputTextboxMenuItem
+            .addActionListener(new java.awt.event.ActionListener()
+            {
+              @Override
+              public void actionPerformed(ActionEvent e)
+              {
+                inputTextboxMenuItem_actionPerformed(null);
+              }
+            });
+    quit.setText(MessageManager.getString("action.quit"));
+    quit.addActionListener(new java.awt.event.ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        quit();
+      }
+    });
+    aboutMenuItem.setText(MessageManager.getString("label.about"));
+    aboutMenuItem.addActionListener(new java.awt.event.ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        aboutMenuItem_actionPerformed(e);
+      }
+    });
+    documentationMenuItem
+            .setText(MessageManager.getString("label.documentation"));
+    documentationMenuItem.setAccelerator(javax.swing.KeyStroke
+            .getKeyStroke(java.awt.event.KeyEvent.VK_F1, 0, false));
+    documentationMenuItem
+            .addActionListener(new java.awt.event.ActionListener()
+            {
+              @Override
+              public void actionPerformed(ActionEvent e)
+              {
+                documentationMenuItem_actionPerformed();
+              }
+            });
+    this.getContentPane().setLayout(flowLayout1);
+    windowMenu.setText(MessageManager.getString("label.window"));
+    preferences.setText(MessageManager.getString("label.preferences"));
+    preferences.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        preferences_actionPerformed(e);
+      }
+    });
+    toolsMenu.setText(MessageManager.getString("label.tools"));
+    saveState.setText(MessageManager.getString("action.save_project"));
+    saveState.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        saveState_actionPerformed();
+      }
+    });
+    saveAsState.setText(MessageManager.getString("action.save_project_as"));
+    saveAsState.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        saveAsState_actionPerformed(e);
+      }
+    });
+    loadState.setText(MessageManager.getString("action.load_project"));
+    loadState.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        loadState_actionPerformed();
+      }
+    });
+    inputMenu.setText(MessageManager.getString("label.input_alignment"));
+    inputSequence
+            .setText(MessageManager.getString("action.fetch_sequences"));
+    inputSequence.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        inputSequence_actionPerformed(e);
+      }
+    });
+    closeAll.setText(MessageManager.getString("action.close_all"));
+    closeAll.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        closeAll_actionPerformed(e);
+      }
+    });
+    raiseRelated.setText(
+            MessageManager.getString("action.raise_associated_windows"));
+    raiseRelated.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        raiseRelated_actionPerformed(e);
+      }
+    });
+    minimizeAssociated.setText(
+            MessageManager.getString("action.minimize_associated_windows"));
+    minimizeAssociated.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        minimizeAssociated_actionPerformed(e);
+      }
+    });
+    garbageCollect
+            .setText(MessageManager.getString("label.collect_garbage"));
+    garbageCollect.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        garbageCollect_actionPerformed(e);
+      }
+    });
+    showMemusage
+            .setText(MessageManager.getString("label.show_memory_usage"));
+    showMemusage.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        showMemusage_actionPerformed(e);
+      }
+    });
+    showConsole
+            .setText(MessageManager.getString("label.show_java_console"));
+    showConsole.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        showConsole_actionPerformed(e);
+      }
+    });
+    showNews.setText(MessageManager.getString("label.show_jalview_news"));
+    showNews.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        showNews_actionPerformed(e);
+      }
+    });
+    groovyShell = new JMenuItem();
+    groovyShell.setText(MessageManager.getString("label.groovy_console"));
+    groovyShell.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        groovyShell_actionPerformed();
+      }
+    });
+    experimentalFeatures = new JCheckBoxMenuItem();
+    experimentalFeatures
+            .setText(MessageManager.getString("label.show_experimental"));
+    experimentalFeatures.setToolTipText(
+            MessageManager.getString("label.show_experimental_tip"));
+    experimentalFeatures.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        showExperimental_actionPerformed(experimentalFeatures.isSelected());
+      }
+    });
+
+    snapShotWindow.setText(MessageManager.getString("label.take_snapshot"));
+    snapShotWindow.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        snapShotWindow_actionPerformed(e);
+      }
+    });
+
+    Float specversion = Platform.isJS() ? Float.valueOf(8)
+            : Float.parseFloat(
+                    System.getProperty("java.specification.version"));
+
+    desktopMenubar.add(FileMenu);
+    desktopMenubar.add(toolsMenu);
+    desktopMenubar.add(HelpMenu);
+    desktopMenubar.add(windowMenu);
+    FileMenu.add(inputMenu);
+    FileMenu.add(inputSequence);
+    FileMenu.addSeparator();
+    // FileMenu.add(saveState);
+    FileMenu.add(saveAsState);
+    FileMenu.add(loadState);
+    FileMenu.addSeparator();
+    if (!APQHandlers.setQuit)
+    {
+      FileMenu.add(quit);
+    }
+    if (!APQHandlers.setAbout)
+    {
+      HelpMenu.add(aboutMenuItem);
+    }
+    HelpMenu.add(documentationMenuItem);
+    if (!APQHandlers.setPreferences)
+    {
+      toolsMenu.add(preferences);
+    }
+    if (!Platform.isJS())
+    {
+      toolsMenu.add(showMemusage);
+      toolsMenu.add(showConsole);
+      toolsMenu.add(showNews);
+      toolsMenu.add(garbageCollect);
+      toolsMenu.add(groovyShell);
+    }
+    toolsMenu.add(experimentalFeatures);
+    // toolsMenu.add(snapShotWindow);
+    inputMenu.add(inputLocalFileMenuItem);
+    inputMenu.add(inputURLMenuItem);
+    inputMenu.add(inputTextboxMenuItem);
+    windowMenu.add(closeAll);
+    windowMenu.add(raiseRelated);
+    windowMenu.add(minimizeAssociated);
+    windowMenu.addSeparator();
+    // inputMenu.add(vamsasLoad);
+  }
+
+  protected void showExperimental_actionPerformed(boolean selected)
+  {
+  }
+
+  protected void groovyShell_actionPerformed()
+  {
+  }
+
+  protected void snapShotWindow_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
+  }
+
+  protected void showConsole_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
+  }
+
+  protected void showNews_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
+  }
+
+  protected void showMemusage_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
+  }
+
+  protected void garbageCollect_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
+  }
+
+  protected void vamsasStMenu_actionPerformed()
+  {
+  }
+
+  public void vamsasSave_actionPerformed(ActionEvent e)
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  protected void inputLocalFileMenuItem_actionPerformed(
+          jalview.gui.AlignViewport av)
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   * @throws FileFormatException
+   */
+  protected void inputURLMenuItem_actionPerformed(
+          jalview.gui.AlignViewport av) throws FileFormatException
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  protected void inputTextboxMenuItem_actionPerformed(
+          AlignmentViewPanel avp)
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   */
+  protected void quit()
+  {
+    // System.out.println("********** GDesktop.quit()");
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  protected void aboutMenuItem_actionPerformed(ActionEvent e)
+  {
+  }
+
+  protected void documentationMenuItem_actionPerformed()
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  protected void preferences_actionPerformed(ActionEvent e)
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void saveState_actionPerformed()
+  {
+  }
+
+  public void saveAsState_actionPerformed(ActionEvent e)
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void loadState_actionPerformed()
+  {
+  }
+
+  /**
+   * DOCUMENT ME!
+   * 
+   * @param e
+   *          DOCUMENT ME!
+   */
+  public void loadJalviewAlign_actionPerformed(ActionEvent e)
+  {
+  }
+
+  public void vamsasStart_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void inputSequence_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void vamsasStop_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void closeAll_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void raiseRelated_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void minimizeAssociated_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void vamsasImport_actionPerformed(ActionEvent e)
+  {
+  }
+}