X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGStructureChooser.java;h=d8101e3d7bc4f40d4dc6044caed00c353a4079e6;hp=235c499d480b47250c7d9c74c9d31e67e2bd3d2e;hb=fa9da54fb97cb2eacb1af7859024d90166bddb8f;hpb=ec94f7012292e38963070fd5c0fa6dea244e6b3d diff --git a/src/jalview/jbgui/GStructureChooser.java b/src/jalview/jbgui/GStructureChooser.java index 235c499..d8101e3 100644 --- a/src/jalview/jbgui/GStructureChooser.java +++ b/src/jalview/jbgui/GStructureChooser.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -21,21 +21,25 @@ package jalview.jbgui; -import jalview.datamodel.SequenceI; -import jalview.gui.AlignmentPanel; -import jalview.gui.Desktop; -import jalview.jbgui.PDBDocFieldPreferences.PreferenceSource; -import jalview.util.MessageManager; - import java.awt.BorderLayout; import java.awt.CardLayout; +import java.awt.Component; import java.awt.Dimension; import java.awt.FlowLayout; +import java.awt.Font; +import java.awt.GridLayout; +import java.awt.Point; import java.awt.event.ActionEvent; +import java.awt.event.ActionListener; import java.awt.event.ItemEvent; import java.awt.event.ItemListener; +import java.awt.event.KeyAdapter; +import java.awt.event.KeyEvent; import java.awt.event.MouseAdapter; import java.awt.event.MouseEvent; +import java.util.Arrays; +import java.util.HashMap; +import java.util.Map; import javax.swing.ImageIcon; import javax.swing.JButton; @@ -44,87 +48,108 @@ import javax.swing.JComboBox; import javax.swing.JFrame; import javax.swing.JInternalFrame; import javax.swing.JLabel; +import javax.swing.JList; import javax.swing.JPanel; import javax.swing.JScrollPane; +import javax.swing.JSeparator; import javax.swing.JTabbedPane; import javax.swing.JTable; import javax.swing.JTextField; +import javax.swing.ListCellRenderer; +import javax.swing.Timer; import javax.swing.event.ChangeEvent; import javax.swing.event.ChangeListener; import javax.swing.event.DocumentEvent; import javax.swing.event.DocumentListener; +import javax.swing.event.InternalFrameEvent; +import javax.swing.table.TableColumn; + +import jalview.datamodel.SequenceI; +import jalview.fts.api.FTSDataColumnI; +import jalview.fts.core.FTSDataColumnPreferences; +import jalview.gui.AlignmentPanel; +import jalview.gui.Desktop; +import jalview.gui.JvSwingUtils; +import jalview.gui.StructureViewer; +import jalview.util.MessageManager; +import net.miginfocom.swing.MigLayout; @SuppressWarnings("serial") /** - * GUI layout for structure chooser + * GUI layout for structure chooser + * * @author tcnofoegbu * */ -public abstract class GStructureChooser extends JPanel implements - ItemListener +public abstract class GStructureChooser extends JPanel + implements ItemListener { + private static final Font VERDANA_12 = new Font("Verdana", 0, 12); + + public static final String VIEWS_FILTER = "VIEWS_FILTER"; + + protected static final String VIEWS_FROM_FILE = "VIEWS_FROM_FILE"; + + protected static final String VIEWS_ENTER_ID = "VIEWS_ENTER_ID"; + + /* + * 'cached' structure view + */ + protected static final String VIEWS_LOCAL_PDB = "VIEWS_LOCAL_PDB"; + + protected JPanel statusPanel = new JPanel(); + + public JLabel statusBar = new JLabel(); + protected String frameTitle = MessageManager .getString("label.structure_chooser"); protected JInternalFrame mainFrame = new JInternalFrame(frameTitle); - protected JComboBox cmb_filterOption = new JComboBox(); + protected JComboBox cmb_filterOption = new JComboBox<>(); protected AlignmentPanel ap; - - protected StringBuilder errorWarning = new StringBuilder(); - protected JLabel lbl_result = new JLabel( - MessageManager.getString("label.select")); + protected StringBuilder errorWarning = new StringBuilder(); - protected JButton btn_view = new JButton(); + protected JButton btn_add; - protected JButton btn_cancel = new JButton(); + protected JButton btn_newView; protected JButton btn_pdbFromFile = new JButton(); - protected JTextField txt_search = new JTextField(14); - - private JPanel pnl_actions = new JPanel(); - - private JPanel pnl_main = new JPanel(); + // holder for icon and button + protected JPanel pnl_queryTDB; - private JPanel pnl_idInput = new JPanel(new FlowLayout()); + protected JButton btn_queryTDB = new JButton(); - private JPanel pnl_fileChooser = new JPanel(new FlowLayout()); + protected JCheckBox chk_superpose = new JCheckBox( + MessageManager.getString("label.superpose_structures")); - private JPanel pnl_idInputBL = new JPanel(new BorderLayout()); - - private JPanel pnl_fileChooserBL = new JPanel(new BorderLayout()); - - private JPanel pnl_locPDB = new JPanel(new BorderLayout()); + protected JTextField txt_search = new JTextField(14); protected JPanel pnl_switchableViews = new JPanel(new CardLayout()); protected CardLayout layout_switchableViews = (CardLayout) (pnl_switchableViews .getLayout()); - private BorderLayout mainLayout = new BorderLayout(); - - protected JCheckBox chk_rememberSettings = new JCheckBox( - MessageManager.getString("label.dont_ask_me_again")); - protected JCheckBox chk_invertFilter = new JCheckBox( MessageManager.getString("label.invert")); - protected ImageIcon loadingImage = new ImageIcon(getClass().getResource( - "/images/loading.gif")); + protected ImageIcon loadingImage = new ImageIcon( + getClass().getResource("/images/loading.gif")); - protected ImageIcon goodImage = new ImageIcon(getClass().getResource( - "/images/good.png")); + protected ImageIcon goodImage = new ImageIcon( + getClass().getResource("/images/good.png")); - protected ImageIcon errorImage = new ImageIcon(getClass().getResource( - "/images/error.png")); + protected ImageIcon errorImage = new ImageIcon( + getClass().getResource("/images/error.png")); - protected ImageIcon warningImage = new ImageIcon(getClass().getResource( - "/images/warning.gif")); + protected ImageIcon warningImage = new ImageIcon( + getClass().getResource("/images/warning.gif")); - protected JLabel lbl_warning = new JLabel(warningImage); + protected ImageIcon tdbImage = new ImageIcon(getClass() + .getResource("/images/3d-beacons-logo-transparent.png")); protected JLabel lbl_loading = new JLabel(loadingImage); @@ -132,35 +157,110 @@ public abstract class GStructureChooser extends JPanel implements protected JLabel lbl_fromFileStatus = new JLabel(errorImage); + protected AssociateSeqPanel idInputAssSeqPanel = new AssociateSeqPanel(); - protected AssciateSeqPanel idInputAssSeqPanel = new AssciateSeqPanel(); + protected AssociateSeqPanel fileChooserAssSeqPanel = new AssociateSeqPanel(); - protected AssciateSeqPanel fileChooserAssSeqPanel = new AssciateSeqPanel(); + protected JComboBox targetView = new JComboBox<>(); - protected static final String VIEWS_FILTER = "VIEWS_FILTER"; + protected JTable tbl_local_pdb = new JTable(); - protected static final String VIEWS_FROM_FILE = "VIEWS_FROM_FILE"; + protected JTabbedPane pnl_filter = new JTabbedPane(); - protected static final String VIEWS_ENTER_ID = "VIEWS_ENTER_ID"; + protected abstract FTSDataColumnPreferences getFTSDocFieldPrefs(); - protected static final String VIEWS_LOCAL_PDB = "VIEWS_LOCAL_PDB"; + protected abstract void setFTSDocFieldPrefs( + FTSDataColumnPreferences newPrefs); - protected JTable tbl_summary = new JTable(); + protected FTSDataColumnI[] previousWantedFields; - protected JScrollPane scrl_foundStructures = new JScrollPane( - tbl_summary); + protected static Map tempUserPrefs = new HashMap<>(); - protected JTable tbl_local_pdb = new JTable(); + private JTable tbl_summary = new JTable() + { + private boolean inLayout; + + @Override + public boolean getScrollableTracksViewportWidth() + { + return hasExcessWidth(); + + } + + @Override + public void doLayout() + { + if (hasExcessWidth()) + { + autoResizeMode = AUTO_RESIZE_SUBSEQUENT_COLUMNS; + } + inLayout = true; + super.doLayout(); + inLayout = false; + autoResizeMode = AUTO_RESIZE_OFF; + } + + protected boolean hasExcessWidth() + { + return getPreferredSize().width < getParent().getWidth(); + } - protected JScrollPane scrl_localPDB = new JScrollPane(tbl_local_pdb); + @Override + public void columnMarginChanged(ChangeEvent e) + { + if (isEditing()) + { + removeEditor(); + } + TableColumn resizingColumn = getTableHeader().getResizingColumn(); + // Need to do this here, before the parent's + // layout manager calls getPreferredSize(). + if (resizingColumn != null && autoResizeMode == AUTO_RESIZE_OFF + && !inLayout) + { + resizingColumn.setPreferredWidth(resizingColumn.getWidth()); + String colHeader = resizingColumn.getHeaderValue().toString(); + tempUserPrefs.put(colHeader, resizingColumn.getWidth()); + } + resizeAndRepaint(); + } - private JTabbedPane pnl_filter = new JTabbedPane(); + @Override + public String getToolTipText(MouseEvent evt) + { + String toolTipText = null; + java.awt.Point pnt = evt.getPoint(); + int rowIndex = rowAtPoint(pnt); + int colIndex = columnAtPoint(pnt); - private PDBDocFieldPreferences pdbDocFieldPrefs = new PDBDocFieldPreferences( - PreferenceSource.STRUCTURE_CHOOSER); + try + { + if (getValueAt(rowIndex, colIndex) == null) + { + return null; + } + toolTipText = getValueAt(rowIndex, colIndex).toString(); + } catch (Exception e) + { + // e.printStackTrace(); + } + toolTipText = (toolTipText == null ? null + : (toolTipText.length() > 500 + ? JvSwingUtils.wrapTooltip(true, + "\"" + toolTipText.subSequence(0, 500) + + "...\"") + : JvSwingUtils.wrapTooltip(true, toolTipText))); + return toolTipText; + } + }; public GStructureChooser() { + } + + protected void initDialog() + { + try { jbInit(); @@ -169,10 +269,37 @@ public abstract class GStructureChooser extends JPanel implements mainFrame.pack(); } catch (Exception e) { + System.out.println(e); // for JavaScript TypeError e.printStackTrace(); } } + // BH SwingJS optimization + // (a) 100-ms interruptable timer for text entry -- BH 1/10/2019 + // (b) two-character minimum, at least for JavaScript. + + private Timer timer; + + protected void txt_search_ActionPerformedDelayed() + { + if (timer != null) + { + timer.stop(); + } + timer = new Timer(300, new ActionListener() + { + + @Override + public void actionPerformed(ActionEvent e) + { + txt_search_ActionPerformed(); + } + }); + timer.setRepeats(false); + timer.start(); + } + // + /** * Initializes the GUI default properties * @@ -180,215 +307,462 @@ public abstract class GStructureChooser extends JPanel implements */ private void jbInit() throws Exception { + Integer width = tempUserPrefs.get("structureChooser.width") == null + ? 800 + : tempUserPrefs.get("structureChooser.width"); + Integer height = tempUserPrefs.get("structureChooser.height") == null + ? 400 + : tempUserPrefs.get("structureChooser.height"); tbl_summary.setAutoCreateRowSorter(true); + tbl_summary.getTableHeader().setReorderingAllowed(false); + tbl_summary.addMouseListener(new MouseAdapter() + { + @Override + public void mousePressed(MouseEvent e) + { + if (!popupAction(e)) + { + super.mousePressed(e); + } + } + + @Override + public void mouseClicked(MouseEvent e) + { + if (!popupAction(e)) + { + validateSelections(); + } + } + + @Override + public void mouseReleased(MouseEvent e) + { + if (!popupAction(e)) + { + validateSelections(); + } + } + + boolean popupAction(MouseEvent e) + { + if (e.isPopupTrigger()) + { + Point pt = e.getPoint(); + int selectedRow = tbl_summary.rowAtPoint(pt); + if (showPopupFor(selectedRow, pt.x, pt.y)) + { + return true; + } + } + return false; + } + }); + tbl_summary.addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent evt) + { + validateSelections(); + switch (evt.getKeyCode()) + { + case KeyEvent.VK_ESCAPE: // escape key + mainFrame.dispose(); + break; + case KeyEvent.VK_ENTER: // enter key + if (btn_add.isEnabled()) + { + add_ActionPerformed(); + } + break; + case KeyEvent.VK_TAB: // tab key + if (evt.isShiftDown()) + { + pnl_filter.requestFocus(); + } + else + { + btn_add.requestFocus(); + } + evt.consume(); + break; + default: + return; + } + } + }); + + JButton btn_cancel = new JButton( + MessageManager.getString("action.cancel")); + btn_cancel.setFont(VERDANA_12); + btn_cancel.addActionListener(new java.awt.event.ActionListener() + { + @Override + public void actionPerformed(ActionEvent e) + { + closeAction(pnl_filter.getHeight()); + } + }); + btn_cancel.addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent evt) + { + if (evt.getKeyCode() == KeyEvent.VK_ENTER) + { + closeAction(pnl_filter.getHeight()); + } + } + }); + tbl_local_pdb.setAutoCreateRowSorter(true); + tbl_local_pdb.getTableHeader().setReorderingAllowed(false); tbl_local_pdb.addMouseListener(new MouseAdapter() { + @Override public void mouseClicked(MouseEvent e) { - updateCurrentView(); + validateSelections(); + } + + @Override + public void mouseReleased(MouseEvent e) + { + validateSelections(); + } + }); + tbl_local_pdb.addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent evt) + { + validateSelections(); + switch (evt.getKeyCode()) + { + case KeyEvent.VK_ESCAPE: // escape key + mainFrame.dispose(); + break; + case KeyEvent.VK_ENTER: // enter key + if (btn_add.isEnabled()) + { + add_ActionPerformed(); + } + break; + case KeyEvent.VK_TAB: // tab key + if (evt.isShiftDown()) + { + cmb_filterOption.requestFocus(); + } + else + { + if (btn_add.isEnabled()) + { + btn_add.requestFocus(); + } + else + { + btn_cancel.requestFocus(); + } + } + evt.consume(); + break; + default: + return; + } } }); - btn_view.setFont(new java.awt.Font("Verdana", 0, 12)); - btn_view.setText(MessageManager.getString("action.view")); - btn_view.addActionListener(new java.awt.event.ActionListener() + btn_newView = new JButton( + MessageManager.formatMessage("action.new_structure_view_with", + StructureViewer.getViewerType().toString())); + btn_newView.setFont(VERDANA_12); + btn_newView.addActionListener(new java.awt.event.ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - ok_ActionPerformed(); + newView_ActionPerformed(); } }); - btn_cancel.setFont(new java.awt.Font("Verdana", 0, 12)); - btn_cancel.setText(MessageManager.getString("action.cancel")); - btn_cancel.addActionListener(new java.awt.event.ActionListener() + btn_newView.addKeyListener(new KeyAdapter() { + @Override + public void keyPressed(KeyEvent evt) + { + if (evt.getKeyCode() == KeyEvent.VK_ENTER) + { + newView_ActionPerformed(); + } + } + }); + + // TODO: JAL-3898 - get list of available external programs to view + // structures with + + btn_add = new JButton(MessageManager.getString("action.add")); + btn_add.setFont(VERDANA_12); + btn_add.addActionListener(new java.awt.event.ActionListener() + { + @Override public void actionPerformed(ActionEvent e) { - mainFrame.dispose(); + add_ActionPerformed(); + } + }); + btn_add.addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent evt) + { + if (evt.getKeyCode() == KeyEvent.VK_ENTER) + { + add_ActionPerformed(); + } } }); - btn_pdbFromFile.setFont(new java.awt.Font("Verdana", 0, 12)); + btn_pdbFromFile.setFont(VERDANA_12); String btn_title = MessageManager.getString("label.select_pdb_file"); btn_pdbFromFile.setText(btn_title + " "); btn_pdbFromFile.addActionListener(new java.awt.event.ActionListener() { + @Override public void actionPerformed(ActionEvent e) { pdbFromFile_actionPerformed(); } }); + btn_pdbFromFile.addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent evt) + { + if (evt.getKeyCode() == KeyEvent.VK_ENTER) + { + pdbFromFile_actionPerformed(); + } + } + }); - scrl_foundStructures.setPreferredSize(new Dimension(500, 300)); - scrl_foundStructures - .setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_NEVER); - - scrl_localPDB.setPreferredSize(new Dimension(500, 300)); - scrl_localPDB - .setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_NEVER); - - cmb_filterOption.setFont(new java.awt.Font("Verdana", 0, 12)); - chk_invertFilter.setFont(new java.awt.Font("Verdana", 0, 12)); - chk_rememberSettings.setFont(new java.awt.Font("Verdana", 0, 12)); + JScrollPane scrl_foundStructures = new JScrollPane(tbl_summary); + scrl_foundStructures.setPreferredSize(new Dimension(width, height)); + JScrollPane scrl_localPDB = new JScrollPane(tbl_local_pdb); + scrl_localPDB.setPreferredSize(new Dimension(width, height)); + scrl_localPDB.setHorizontalScrollBarPolicy( + JScrollPane.HORIZONTAL_SCROLLBAR_NEVER); - txt_search.setToolTipText(MessageManager - .getString("label.enter_pdb_id")); - cmb_filterOption.setToolTipText(MessageManager - .getString("info.select_filter_option")); + chk_invertFilter.setFont(VERDANA_12); + txt_search.setToolTipText(JvSwingUtils.wrapTooltip(true, + MessageManager.getString("label.enter_pdb_id_tip"))); txt_search.getDocument().addDocumentListener(new DocumentListener() { @Override public void insertUpdate(DocumentEvent e) { - txt_search_ActionPerformed(); + txt_search_ActionPerformedDelayed(); } @Override public void removeUpdate(DocumentEvent e) { - txt_search_ActionPerformed(); + txt_search_ActionPerformedDelayed(); } @Override public void changedUpdate(DocumentEvent e) { - txt_search_ActionPerformed(); + txt_search_ActionPerformedDelayed(); } }); + cmb_filterOption.setFont(VERDANA_12); + cmb_filterOption.setToolTipText( + MessageManager.getString("info.select_filter_option")); cmb_filterOption.addItemListener(this); - chk_invertFilter.addItemListener(this); - - pnl_actions.add(chk_rememberSettings); - pnl_actions.add(btn_view); - pnl_actions.add(btn_cancel); + // add CustomComboSeparatorsRenderer to filter option combo-box + cmb_filterOption.setRenderer(new CustomComboSeparatorsRenderer( + (ListCellRenderer) cmb_filterOption.getRenderer()) + { + @Override + protected boolean addSeparatorAfter(JList list, FilterOption value, + int index) + { + return value.isAddSeparatorAfter(); + } + }); - // pnl_filter.add(lbl_result); - pnl_main.add(cmb_filterOption); - pnl_main.add(lbl_loading); - pnl_main.add(chk_invertFilter); + chk_invertFilter.addItemListener(this); + btn_queryTDB = new JButton( + MessageManager.getString("label.search_3dbeacons")); + btn_queryTDB.setFont(VERDANA_12); + btn_queryTDB.setToolTipText( + MessageManager.getString("label.find_models_from_3dbeacons")); + btn_queryTDB.setPreferredSize(new Dimension(300, 24)); + btn_queryTDB.setVisible(false); + + targetView.setVisible(false); + + JPanel actionsPanel = new JPanel(new MigLayout()); + actionsPanel.add(targetView, "left"); + actionsPanel.add(btn_add, "wrap"); + actionsPanel.add(chk_superpose, "left"); + actionsPanel.add(btn_newView); + actionsPanel.add(btn_cancel, "right"); + + JPanel pnl_main = new JPanel(new BorderLayout()); + JPanel pnl_controls = new JPanel(); + pnl_queryTDB = new JPanel(new FlowLayout()); + pnl_queryTDB.setBackground(getBackground()); + pnl_queryTDB.add(new JLabel(tdbImage)); + pnl_queryTDB.add(btn_queryTDB); + pnl_queryTDB.setVisible(false); + pnl_main.add(pnl_queryTDB, BorderLayout.NORTH); + pnl_controls.add(cmb_filterOption); + pnl_controls.add(lbl_loading); + pnl_controls.add(chk_invertFilter); + pnl_main.add(pnl_controls, BorderLayout.CENTER); lbl_loading.setVisible(false); - + JPanel pnl_fileChooser = new JPanel(new FlowLayout()); pnl_fileChooser.add(btn_pdbFromFile); pnl_fileChooser.add(lbl_fromFileStatus); + JPanel pnl_fileChooserBL = new JPanel(new BorderLayout()); pnl_fileChooserBL.add(fileChooserAssSeqPanel, BorderLayout.NORTH); pnl_fileChooserBL.add(pnl_fileChooser, BorderLayout.CENTER); + JPanel pnl_idInput = new JPanel(new FlowLayout()); pnl_idInput.add(txt_search); pnl_idInput.add(lbl_pdbManualFetchStatus); + + JPanel pnl_idInputBL = new JPanel(new BorderLayout()); pnl_idInputBL.add(idInputAssSeqPanel, BorderLayout.NORTH); pnl_idInputBL.add(pnl_idInput, BorderLayout.CENTER); - + final String foundStructureSummary = MessageManager .getString("label.found_structures_summary"); - + final String configureCols = MessageManager + .getString("label.configure_displayed_columns"); ChangeListener changeListener = new ChangeListener() { + @Override public void stateChanged(ChangeEvent changeEvent) { JTabbedPane sourceTabbedPane = (JTabbedPane) changeEvent .getSource(); int index = sourceTabbedPane.getSelectedIndex(); + btn_add.setVisible(targetView.isVisible()); + btn_newView.setVisible(true); + btn_cancel.setVisible(true); + if (sourceTabbedPane.getTitleAt(index).equals(configureCols)) + { + btn_add.setEnabled(false); + btn_cancel.setEnabled(false); + btn_add.setVisible(false); + btn_newView.setEnabled(false); + btn_cancel.setVisible(false); + previousWantedFields = getFTSDocFieldPrefs() + .getStructureSummaryFields() + .toArray(new FTSDataColumnI[0]); + } if (sourceTabbedPane.getTitleAt(index) .equals(foundStructureSummary)) { - tabRefresh(); + btn_cancel.setEnabled(true); + if (wantedFieldsUpdated()) + { + tabRefresh(); + } + else + { + validateSelections(); + } } } }; pnl_filter.addChangeListener(changeListener); - pnl_filter.setPreferredSize(new Dimension(500, 300)); + pnl_filter.setPreferredSize(new Dimension(width, height)); pnl_filter.add(foundStructureSummary, scrl_foundStructures); - pnl_filter.add( - MessageManager.getString("label.configure_displayed_columns"), - pdbDocFieldPrefs); - + pnl_filter.add(configureCols, getFTSDocFieldPrefs()); + + JPanel pnl_locPDB = new JPanel(new BorderLayout()); pnl_locPDB.add(scrl_localPDB); pnl_switchableViews.add(pnl_fileChooserBL, VIEWS_FROM_FILE); pnl_switchableViews.add(pnl_idInputBL, VIEWS_ENTER_ID); pnl_switchableViews.add(pnl_filter, VIEWS_FILTER); pnl_switchableViews.add(pnl_locPDB, VIEWS_LOCAL_PDB); - - this.setLayout(mainLayout); + + this.setLayout(new BorderLayout()); this.add(pnl_main, java.awt.BorderLayout.NORTH); this.add(pnl_switchableViews, java.awt.BorderLayout.CENTER); - this.add(pnl_actions, java.awt.BorderLayout.SOUTH); - + // this.add(pnl_actions, java.awt.BorderLayout.SOUTH); + statusPanel.setLayout(new GridLayout()); + + JPanel pnl_actionsAndStatus = new JPanel(new BorderLayout()); + pnl_actionsAndStatus.add(actionsPanel, BorderLayout.CENTER); + pnl_actionsAndStatus.add(statusPanel, BorderLayout.SOUTH); + statusPanel.add(statusBar, null); + this.add(pnl_actionsAndStatus, java.awt.BorderLayout.SOUTH); + + mainFrame.addInternalFrameListener( + new javax.swing.event.InternalFrameAdapter() + { + @Override + public void internalFrameClosing(InternalFrameEvent e) + { + closeAction(pnl_filter.getHeight()); + } + }); mainFrame.setVisible(true); mainFrame.setContentPane(this); mainFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE); - Desktop.addInternalFrame(mainFrame, frameTitle, 800, 400); + Integer x = tempUserPrefs.get("structureChooser.x"); + Integer y = tempUserPrefs.get("structureChooser.y"); + if (x != null && y != null) + { + mainFrame.setLocation(x, y); + } + Desktop.addInternalFrame(mainFrame, frameTitle, width, height); } - - @Override - /** - * Event listener for the 'filter' combo-box and 'invert' check-box - */ - public void itemStateChanged(ItemEvent e) + protected abstract boolean showPopupFor(int selectedRow, int x, int y); + + protected void closeAction(int preferredHeight) { - stateChanged(e); + // System.out.println(">>>>>>>>>> closing internal frame!!!"); + // System.out.println("width : " + mainFrame.getWidth()); + // System.out.println("heigh : " + mainFrame.getHeight()); + // System.out.println("x : " + mainFrame.getX()); + // System.out.println("y : " + mainFrame.getY()); + tempUserPrefs.put("structureChooser.width", pnl_filter.getWidth()); + tempUserPrefs.put("structureChooser.height", preferredHeight); + tempUserPrefs.put("structureChooser.x", mainFrame.getX()); + tempUserPrefs.put("structureChooser.y", mainFrame.getY()); + mainFrame.dispose(); } - /** - * This inner class provides the data model for the structure filter combo-box - * - * @author tcnofoegbu - * - */ - public class FilterOption + public boolean wantedFieldsUpdated() { - private String name; - - private String value; - - private String view; - - public FilterOption(String name, String value, String view) - { - this.name = name; - this.value = value; - this.view = view; - } - - public String getName() + if (previousWantedFields == null) { - return name; + return true; } - public void setName(String name) - { - this.name = name; - } + FTSDataColumnI[] currentWantedFields = getFTSDocFieldPrefs() + .getStructureSummaryFields().toArray(new FTSDataColumnI[0]); + return Arrays.equals(currentWantedFields, previousWantedFields) ? false + : true; - public String getValue() - { - return value; - } - - public void setValue(String value) - { - this.value = value; - } - - public String getView() - { - return view; - } - - public void setView(String view) - { - this.view = view; - } + } - public String toString() - { - return this.name; - } + @Override + /** + * Event listener for the 'filter' combo-box and 'invert' check-box + */ + public void itemStateChanged(ItemEvent e) + { + stateChanged(e); } /** @@ -401,13 +775,15 @@ public abstract class GStructureChooser extends JPanel implements public class AssociateSeqOptions { private SequenceI sequence; + private String name; public AssociateSeqOptions(SequenceI seq) { this.sequence = seq; - this.name = (seq.getName().length() >= 23) ? seq.getName().substring( - 0, 23) : seq.getName(); + this.name = (seq.getName().length() >= 23) + ? seq.getName().substring(0, 23) + : seq.getName(); } public AssociateSeqOptions(String name, SequenceI seq) @@ -416,6 +792,7 @@ public abstract class GStructureChooser extends JPanel implements this.sequence = seq; } + @Override public String toString() { return name; @@ -451,19 +828,19 @@ public abstract class GStructureChooser extends JPanel implements * @author tcnofoegbu * */ - public class AssciateSeqPanel extends JPanel implements ItemListener + public class AssociateSeqPanel extends JPanel implements ItemListener { - private JComboBox cmb_assSeq = new JComboBox(); + private JComboBox cmb_assSeq = new JComboBox<>(); private JLabel lbl_associateSeq = new JLabel(); - public AssciateSeqPanel() + public AssociateSeqPanel() { this.setLayout(new FlowLayout()); this.add(cmb_assSeq); this.add(lbl_associateSeq); - cmb_assSeq.setToolTipText(MessageManager - .getString("info.associate_wit_sequence")); + cmb_assSeq.setToolTipText( + MessageManager.getString("info.associate_wit_sequence")); cmb_assSeq.addItemListener(this); } @@ -492,27 +869,80 @@ public abstract class GStructureChooser extends JPanel implements } } + public JTable getResultTable() + { + return tbl_summary; + } + public JComboBox getCmbFilterOption() { return cmb_filterOption; } - protected abstract void stateChanged(ItemEvent e); + /** + * Custom ListCellRenderer for adding a separator between different categories + * of structure chooser filter option drop-down. + * + * @author tcnofoegbu + * + */ + public abstract class CustomComboSeparatorsRenderer + implements ListCellRenderer + { + private ListCellRenderer regent; + + private JPanel separatorPanel = new JPanel(new BorderLayout()); - protected abstract void updateCurrentView(); + private JSeparator jSeparator = new JSeparator(); - protected abstract void populateFilterComboBox(); + public CustomComboSeparatorsRenderer( + ListCellRenderer listCellRenderer) + { + this.regent = listCellRenderer; + } - protected abstract void ok_ActionPerformed(); + @Override + public Component getListCellRendererComponent(JList list, Object value, + int index, boolean isSelected, boolean cellHasFocus) + { + + Component comp = regent.getListCellRendererComponent(list, value, + index, isSelected, cellHasFocus); + if (index != -1 + && addSeparatorAfter(list, (FilterOption) value, index)) + { + separatorPanel.removeAll(); + separatorPanel.add(comp, BorderLayout.CENTER); + separatorPanel.add(jSeparator, BorderLayout.SOUTH); + return separatorPanel; + } + else + { + return comp; + } + } + + protected abstract boolean addSeparatorAfter(JList list, + FilterOption value, int index); + } + + protected abstract void stateChanged(ItemEvent e); + + protected abstract void add_ActionPerformed(); + + protected abstract void newView_ActionPerformed(); protected abstract void pdbFromFile_actionPerformed(); protected abstract void txt_search_ActionPerformed(); - public abstract void populateCmbAssociateSeqOptions( - JComboBox cmb_assSeq, JLabel lbl_associateSeq); + protected abstract void populateCmbAssociateSeqOptions( + JComboBox cmb_assSeq, + JLabel lbl_associateSeq); + + protected abstract void cmbAssSeqStateChanged(); - public abstract void cmbAssSeqStateChanged(); + protected abstract void tabRefresh(); - public abstract void tabRefresh(); -} + protected abstract void validateSelections(); +} \ No newline at end of file