X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Futil%2FDBRefUtils.java;fp=src%2Fjalview%2Futil%2FDBRefUtils.java;h=77a64e8323ee00e4a27864fbdc725d3c78bf091f;hp=53378527406f8bc0977f5447bbad9acd3c298bfd;hb=4a3def9f59cefe629c9a33d87483283aee085928;hpb=eca4795050a0f7eca3d5dece68eaa54987cebd15

diff --git a/src/jalview/util/DBRefUtils.java b/src/jalview/util/DBRefUtils.java
index 5337852..77a64e8 100755
--- a/src/jalview/util/DBRefUtils.java
+++ b/src/jalview/util/DBRefUtils.java
@@ -78,6 +78,9 @@ public class DBRefUtils
     canonicalSourceNameLookup.put("ensembl-tr", DBRefSource.ENSEMBL);
     canonicalSourceNameLookup.put("ensembl-gn", DBRefSource.ENSEMBL);
 
+    // TODO keep ? (in phyloviewer branch only)
+    canonicalSourceNameLookup.put("pfam", DBRefSource.PFAM);
+
     // guarantee we always have lowercase entries for canonical string lookups
     for (String k : canonicalSourceNameLookup.keySet())
     {
@@ -273,7 +276,7 @@ public class DBRefUtils
   static List<DBRefEntry> searchRefs(List<DBRefEntry> refs,
           DBRefEntry entry, DbRefComp comparator, int mode)
   {
-    List<DBRefEntry> rfs = new ArrayList<DBRefEntry>();
+    List<DBRefEntry> rfs = new ArrayList<>();
     if (refs == null || entry == null)
     {
       return rfs;
@@ -664,7 +667,7 @@ public class DBRefUtils
   public static List<DBRefEntry> searchRefsForSource(
           List<DBRefEntry> dbRefs, String source)
   {
-    List<DBRefEntry> matches = new ArrayList<DBRefEntry>();
+    List<DBRefEntry> matches = new ArrayList<>();
     if (dbRefs != null && source != null)
     {
       for (DBRefEntry dbref : dbRefs)