X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Futil%2FShiftList.java;h=e57b87201d7d160b9f828016deb2425042f0ad6a;hp=be416dcc6e144e3e277ae6ca05cfb928fd55f480;hb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;hpb=506d60f0e188723ddc91c26824b41ac7034df3fe

diff --git a/src/jalview/util/ShiftList.java b/src/jalview/util/ShiftList.java
index be416dc..e57b872 100644
--- a/src/jalview/util/ShiftList.java
+++ b/src/jalview/util/ShiftList.java
@@ -1,20 +1,19 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
  * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  * 
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  */
 package jalview.util;
 
@@ -38,9 +37,9 @@ public class ShiftList
    * addShift
    * 
    * @param pos
-   *                start position for shift (in original reference frame)
+   *          start position for shift (in original reference frame)
    * @param shift
-   *                length of shift
+   *          length of shift
    */
   public void addShift(int pos, int shift)
   {
@@ -66,7 +65,7 @@ public class ShiftList
    * shift
    * 
    * @param pos
-   *                int
+   *          int
    * @return int shifted position
    */
   public int shift(int pos)
@@ -118,8 +117,8 @@ public class ShiftList
   }
 
   /**
-   * parse a 1d map of position 1<i<n to L<pos[i]<N such as that returned
-   * from SequenceI.gapMap()
+   * parse a 1d map of position 1<i<n to L<pos[i]<N such as that returned from
+   * SequenceI.gapMap()
    * 
    * @param gapMap
    * @return shifts from map index to mapped position