X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2FAlignmentViewport.java;fp=src%2Fjalview%2Fviewmodel%2FAlignmentViewport.java;h=b4e33c83f8c56c9a3b596adbf3b49e7dd6fc25ec;hp=d7ba417ccb61f4352471f95eaa030bae67b07e88;hb=4a3def9f59cefe629c9a33d87483283aee085928;hpb=eca4795050a0f7eca3d5dece68eaa54987cebd15 diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java index d7ba417..b4e33c8 100644 --- a/src/jalview/viewmodel/AlignmentViewport.java +++ b/src/jalview/viewmodel/AlignmentViewport.java @@ -45,6 +45,7 @@ import jalview.datamodel.Sequence; import jalview.datamodel.SequenceCollectionI; import jalview.datamodel.SequenceGroup; import jalview.datamodel.SequenceI; +import jalview.ext.treeviewer.TreeI; import jalview.renderer.ResidueShader; import jalview.renderer.ResidueShaderI; import jalview.schemes.ColourSchemeI; @@ -961,6 +962,7 @@ public abstract class AlignmentViewport changeSupport = null; ranges = null; currentTree = null; + currentExtTree = null; selectionGroup = null; colSel = null; setAlignment(null); @@ -2913,6 +2915,8 @@ public abstract class AlignmentViewport protected TreeModel currentTree = null; + protected TreeI currentExtTree = null; + @Override public boolean hasSearchResults() { @@ -3096,4 +3100,14 @@ public abstract class AlignmentViewport return (alignment.getHiddenColumns().getVisContigsIterator(start, end, false)); } + public TreeI getCurrentExtTree() + { + return currentExtTree; + } + + public void setCurrentExtTree(TreeI externalTree) + { + currentExtTree = externalTree; + } + }