X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fseqfetcher%2FASequenceFetcher.java;h=c28d8e2c75bf7ab077e4426693708182571fa38f;hp=a8a390465c4b6466ca20ac1052f44ba890541f40;hb=8edebdd9789b2d93fb8f9db24b8be2c1e6317690;hpb=eee8dfa05eeea5b7cc295ba020647842502efe63

diff --git a/src/jalview/ws/seqfetcher/ASequenceFetcher.java b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
index a8a3904..c28d8e2 100644
--- a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@ -20,6 +20,14 @@
  */
 package jalview.ws.seqfetcher;
 
+import jalview.bin.Cache;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.DBRefEntry;
+import jalview.datamodel.SequenceI;
+import jalview.util.DBRefUtils;
+import jalview.util.MessageManager;
+import jalview.util.QuickSort;
+
 import java.util.ArrayList;
 import java.util.Enumeration;
 import java.util.HashSet;
@@ -30,12 +38,6 @@ import java.util.Map;
 import java.util.Stack;
 import java.util.Vector;
 
-import jalview.datamodel.AlignmentI;
-import jalview.datamodel.DBRefEntry;
-import jalview.datamodel.SequenceI;
-import jalview.util.DBRefUtils;
-import jalview.util.MessageManager;
-
 public class ASequenceFetcher
 {
 
@@ -83,12 +85,12 @@ public class ASequenceFetcher
         return true;
       }
     }
-    jalview.bin.Cache.log.warn("isFetchable doesn't know about '" + source
+    Cache.log.warn("isFetchable doesn't know about '" + source
             + "'");
     return false;
   }
 
-  public SequenceI[] getSequences(jalview.datamodel.DBRefEntry[] refs)
+  public SequenceI[] getSequences(DBRefEntry[] refs)
   {
     SequenceI[] ret = null;
     Vector<SequenceI> rseqs = new Vector();
@@ -288,7 +290,7 @@ public class ASequenceFetcher
       {
         nm[i++] = "" + s.getTier() + s.getDbName().toLowerCase();
       }
-      jalview.util.QuickSort.sort(nm, l);
+      QuickSort.sort(nm, l);
       dbs = new ArrayList<DbSourceProxy>();
       for (i = l.length - 1; i >= 0; i--)
       {
@@ -391,7 +393,7 @@ public class ASequenceFetcher
    */
   public String[] getDbInstances(Class class1)
   {
-    if (!jalview.ws.seqfetcher.DbSourceProxy.class.isAssignableFrom(class1))
+    if (!DbSourceProxy.class.isAssignableFrom(class1))
     {
       throw new Error(MessageManager.formatMessage("error.implementation_error_dbinstance_must_implement_interface", new String[]{class1.toString()}));
     }