X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fxml%2Fbinding%2Fjalview%2FAnnotation.java;h=6c1573f0069844dd8951eec9525eb02c4c3b2fe6;hp=35f78f326e3cf88dd05b6d5b4ee7fefc9069adff;hb=de82138757495ad07eb4bcf741fe3dd253c68bcc;hpb=023163e0fe8837c1ddb75eb30abc058f7747b5c2

diff --git a/src/jalview/xml/binding/jalview/Annotation.java b/src/jalview/xml/binding/jalview/Annotation.java
index 35f78f3..6c1573f 100644
--- a/src/jalview/xml/binding/jalview/Annotation.java
+++ b/src/jalview/xml/binding/jalview/Annotation.java
@@ -1,8 +1,8 @@
 //
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 
+// See https://eclipse-ee4j.github.io/jaxb-ri 
 // Any modifications to this file will be lost upon recompilation of the source schema. 
-// Generated on: 2019.06.07 at 02:21:15 PM BST 
+// Generated on: 2021.08.30 at 11:05:22 AM BST 
 //
 
 
@@ -19,61 +19,61 @@ import javax.xml.bind.annotation.XmlType;
 
 
 /**
- * <p>Java class for anonymous complex type.
+ * &lt;p&gt;Java class for anonymous complex type.
  * 
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
  * 
- * <pre>
- * &lt;complexType>
- *   &lt;complexContent>
- *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *       &lt;sequence>
- *         &lt;element ref="{www.vamsas.ac.uk/jalview/version2}annotationElement" maxOccurs="unbounded" minOccurs="0"/>
- *         &lt;element name="label" type="{http://www.w3.org/2001/XMLSchema}string"/>
- *         &lt;element name="description" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
- *         &lt;element name="thresholdLine" minOccurs="0">
- *           &lt;complexType>
- *             &lt;complexContent>
- *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *                 &lt;attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" />
- *                 &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" />
- *                 &lt;attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" />
- *               &lt;/restriction>
- *             &lt;/complexContent>
- *           &lt;/complexType>
- *         &lt;/element>
- *         &lt;element name="property" maxOccurs="unbounded" minOccurs="0">
- *           &lt;complexType>
- *             &lt;complexContent>
- *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *                 &lt;attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
- *                 &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
- *               &lt;/restriction>
- *             &lt;/complexContent>
- *           &lt;/complexType>
- *         &lt;/element>
- *       &lt;/sequence>
- *       &lt;attribute name="graph" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" />
- *       &lt;attribute name="graphType" type="{http://www.w3.org/2001/XMLSchema}int" />
- *       &lt;attribute name="sequenceRef" type="{http://www.w3.org/2001/XMLSchema}string" />
- *       &lt;attribute name="groupRef" type="{http://www.w3.org/2001/XMLSchema}string" />
- *       &lt;attribute name="graphColour" type="{http://www.w3.org/2001/XMLSchema}int" />
- *       &lt;attribute name="graphGroup" type="{http://www.w3.org/2001/XMLSchema}int" />
- *       &lt;attribute name="graphHeight" type="{http://www.w3.org/2001/XMLSchema}int" />
- *       &lt;attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" />
- *       &lt;attribute name="scoreOnly" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- *       &lt;attribute name="score" type="{http://www.w3.org/2001/XMLSchema}double" />
- *       &lt;attribute name="visible" type="{http://www.w3.org/2001/XMLSchema}boolean" />
- *       &lt;attribute name="centreColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
- *       &lt;attribute name="scaleColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
- *       &lt;attribute name="showAllColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" />
- *       &lt;attribute name="autoCalculated" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- *       &lt;attribute name="belowAlignment" type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" />
- *       &lt;attribute name="calcId" type="{http://www.w3.org/2001/XMLSchema}string" />
- *     &lt;/restriction>
- *   &lt;/complexContent>
- * &lt;/complexType>
- * </pre>
+ * &lt;pre&gt;
+ * &amp;lt;complexType&amp;gt;
+ *   &amp;lt;complexContent&amp;gt;
+ *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+ *       &amp;lt;sequence&amp;gt;
+ *         &amp;lt;element ref="{www.vamsas.ac.uk/jalview/version2}annotationElement" maxOccurs="unbounded" minOccurs="0"/&amp;gt;
+ *         &amp;lt;element name="label" type="{http://www.w3.org/2001/XMLSchema}string"/&amp;gt;
+ *         &amp;lt;element name="description" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&amp;gt;
+ *         &amp;lt;element name="thresholdLine" minOccurs="0"&amp;gt;
+ *           &amp;lt;complexType&amp;gt;
+ *             &amp;lt;complexContent&amp;gt;
+ *               &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+ *                 &amp;lt;attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *                 &amp;lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt;
+ *                 &amp;lt;attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
+ *               &amp;lt;/restriction&amp;gt;
+ *             &amp;lt;/complexContent&amp;gt;
+ *           &amp;lt;/complexType&amp;gt;
+ *         &amp;lt;/element&amp;gt;
+ *         &amp;lt;element name="property" maxOccurs="unbounded" minOccurs="0"&amp;gt;
+ *           &amp;lt;complexType&amp;gt;
+ *             &amp;lt;complexContent&amp;gt;
+ *               &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+ *                 &amp;lt;attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *                 &amp;lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *               &amp;lt;/restriction&amp;gt;
+ *             &amp;lt;/complexContent&amp;gt;
+ *           &amp;lt;/complexType&amp;gt;
+ *         &amp;lt;/element&amp;gt;
+ *       &amp;lt;/sequence&amp;gt;
+ *       &amp;lt;attribute name="graph" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
+ *       &amp;lt;attribute name="graphType" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
+ *       &amp;lt;attribute name="sequenceRef" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *       &amp;lt;attribute name="groupRef" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *       &amp;lt;attribute name="graphColour" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
+ *       &amp;lt;attribute name="graphGroup" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
+ *       &amp;lt;attribute name="graphHeight" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
+ *       &amp;lt;attribute name="id" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *       &amp;lt;attribute name="scoreOnly" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&amp;gt;
+ *       &amp;lt;attribute name="score" type="{http://www.w3.org/2001/XMLSchema}double" /&amp;gt;
+ *       &amp;lt;attribute name="visible" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
+ *       &amp;lt;attribute name="centreColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
+ *       &amp;lt;attribute name="scaleColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
+ *       &amp;lt;attribute name="showAllColLabels" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
+ *       &amp;lt;attribute name="autoCalculated" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&amp;gt;
+ *       &amp;lt;attribute name="belowAlignment" type="{http://www.w3.org/2001/XMLSchema}boolean" default="true" /&amp;gt;
+ *       &amp;lt;attribute name="calcId" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *     &amp;lt;/restriction&amp;gt;
+ *   &amp;lt;/complexContent&amp;gt;
+ * &amp;lt;/complexType&amp;gt;
+ * &lt;/pre&gt;
  * 
  * 
  */
@@ -132,20 +132,20 @@ public class Annotation {
     /**
      * Gets the value of the annotationElement property.
      * 
-     * <p>
+     * &lt;p&gt;
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a <CODE>set</CODE> method for the annotationElement property.
+     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the annotationElement property.
      * 
-     * <p>
+     * &lt;p&gt;
      * For example, to add a new item, do as follows:
-     * <pre>
+     * &lt;pre&gt;
      *    getAnnotationElement().add(newItem);
-     * </pre>
+     * &lt;/pre&gt;
      * 
      * 
-     * <p>
+     * &lt;p&gt;
      * Objects of the following type(s) are allowed in the list
      * {@link AnnotationElement }
      * 
@@ -233,20 +233,20 @@ public class Annotation {
     /**
      * Gets the value of the property property.
      * 
-     * <p>
+     * &lt;p&gt;
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a <CODE>set</CODE> method for the property property.
+     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the property property.
      * 
-     * <p>
+     * &lt;p&gt;
      * For example, to add a new item, do as follows:
-     * <pre>
+     * &lt;pre&gt;
      *    getProperty().add(newItem);
-     * </pre>
+     * &lt;/pre&gt;
      * 
      * 
-     * <p>
+     * &lt;p&gt;
      * Objects of the following type(s) are allowed in the list
      * {@link Annotation.Property }
      * 
@@ -673,20 +673,20 @@ public class Annotation {
 
 
     /**
-     * <p>Java class for anonymous complex type.
+     * &lt;p&gt;Java class for anonymous complex type.
      * 
-     * <p>The following schema fragment specifies the expected content contained within this class.
+     * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
      * 
-     * <pre>
-     * &lt;complexType>
-     *   &lt;complexContent>
-     *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
-     *       &lt;attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" />
-     *       &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" />
-     *     &lt;/restriction>
-     *   &lt;/complexContent>
-     * &lt;/complexType>
-     * </pre>
+     * &lt;pre&gt;
+     * &amp;lt;complexType&amp;gt;
+     *   &amp;lt;complexContent&amp;gt;
+     *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+     *       &amp;lt;attribute name="name" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+     *       &amp;lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+     *     &amp;lt;/restriction&amp;gt;
+     *   &amp;lt;/complexContent&amp;gt;
+     * &amp;lt;/complexType&amp;gt;
+     * &lt;/pre&gt;
      * 
      * 
      */
@@ -751,21 +751,21 @@ public class Annotation {
 
 
     /**
-     * <p>Java class for anonymous complex type.
+     * &lt;p&gt;Java class for anonymous complex type.
      * 
-     * <p>The following schema fragment specifies the expected content contained within this class.
+     * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
      * 
-     * <pre>
-     * &lt;complexType>
-     *   &lt;complexContent>
-     *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
-     *       &lt;attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" />
-     *       &lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" />
-     *       &lt;attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" />
-     *     &lt;/restriction>
-     *   &lt;/complexContent>
-     * &lt;/complexType>
-     * </pre>
+     * &lt;pre&gt;
+     * &amp;lt;complexType&amp;gt;
+     *   &amp;lt;complexContent&amp;gt;
+     *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+     *       &amp;lt;attribute name="label" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+     *       &amp;lt;attribute name="value" type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt;
+     *       &amp;lt;attribute name="colour" type="{http://www.w3.org/2001/XMLSchema}int" /&amp;gt;
+     *     &amp;lt;/restriction&amp;gt;
+     *   &amp;lt;/complexContent&amp;gt;
+     * &amp;lt;/complexType&amp;gt;
+     * &lt;/pre&gt;
      * 
      * 
      */