X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2FCrossRefTest.java;h=4bd38d2c746b8d9d4026b7f50b1bc71b89bc21f2;hp=2ca112ff94e84ecb08ee83e371785f6cd1cc027a;hb=b1f3e3bac931d7f309f60e50b18c435c65586de8;hpb=246a3d3d91e543122a5dcbebfa0b5d29d7854aa5

diff --git a/test/jalview/analysis/CrossRefTest.java b/test/jalview/analysis/CrossRefTest.java
index 2ca112f..4bd38d2 100644
--- a/test/jalview/analysis/CrossRefTest.java
+++ b/test/jalview/analysis/CrossRefTest.java
@@ -415,15 +415,19 @@ public class CrossRefTest
   @Test(groups = { "Functional_Failing" })
   public void testFindXrefSequences_withFetch()
   {
+    // JBPNote: this fails because pep1 and pep2 do not have DbRefEntrys with mappings
+    // Fix#1 would be to revise the test data so it fits with 2.11.2+ Jalview assumptions
+    // that ENA retrievals yield dbrefs with Mappings
+    
     SequenceI dna1 = new Sequence("AF039662", "GGGGCAGCACAAGAAC");
     dna1.addDBRef(new DBRefEntry("UNIPROT", "ENA:0", "Q9ZTS2"));
     dna1.addDBRef(new DBRefEntry("UNIPROT", "ENA:0", "P30419"));
     dna1.addDBRef(new DBRefEntry("UNIPROT", "ENA:0", "P00314"));
     final SequenceI pep1 = new Sequence("Q9ZTS2", "MYQLIRSSW");
-    pep1.addDBRef(new DBRefEntry("UNIPROT", "0", "Q9ZTS2"));
+    pep1.addDBRef(new DBRefEntry("UNIPROT", "0", "Q9ZTS2",null,true));
 
     final SequenceI pep2 = new Sequence("P00314", "MRKLLAASG");
-    pep2.addDBRef(new DBRefEntry("UNIPROT", "0", "P00314"));
+    pep2.addDBRef(new DBRefEntry("UNIPROT", "0", "P00314",null,true));
 
     /*
      * argument false suppresses adding DAS sources