source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	Jim Procter <j.procter@dundee.ac.uk>
	Tue, 8 Mar 2022 21:30:05 +0000 (21:30 +0000)
committer	Jim Procter <j.procter@dundee.ac.uk>
	Tue, 8 Mar 2022 21:30:05 +0000 (21:30 +0000)
commit	57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99
tree	39ee00fb6f4da603b260de0cfb1f5cb3c9117f05	tree \| snapshot
parent	e7338a61f3ce96dadf44ac80b2b32cc5ba4b94c8	commit \| diff

JAL-3438 spotless for 2.11.2.0

662 files changed:

src/com/stevesoft/pat/ChangeRule.java		diff \| blob \| history
src/com/stevesoft/pat/Ctrl.java		diff \| blob \| history
src/com/stevesoft/pat/Custom.java		diff \| blob \| history
src/com/stevesoft/pat/FastBracket.java		diff \| blob \| history
src/com/stevesoft/pat/FastMulti.java		diff \| blob \| history
src/com/stevesoft/pat/FileRegex.java		diff \| blob \| history
src/com/stevesoft/pat/Pattern.java		diff \| blob \| history
src/com/stevesoft/pat/PopRule.java		diff \| blob \| history
src/com/stevesoft/pat/Prop.java		diff \| blob \| history
src/com/stevesoft/pat/PushRule.java		diff \| blob \| history
src/com/stevesoft/pat/RegOpt.java		diff \| blob \| history
src/com/stevesoft/pat/RegRes.java		diff \| blob \| history
src/com/stevesoft/pat/Regex.java		diff \| blob \| history
src/com/stevesoft/pat/RegexTokenizer.java		diff \| blob \| history
src/com/stevesoft/pat/RegexWriter.java		diff \| blob \| history
src/com/stevesoft/pat/ReplaceRule.java		diff \| blob \| history
src/com/stevesoft/pat/Replacer.java		diff \| blob \| history
src/com/stevesoft/pat/Skip.java		diff \| blob \| history
src/com/stevesoft/pat/SkipBMH.java		diff \| blob \| history
src/com/stevesoft/pat/Skipped.java		diff \| blob \| history
src/com/stevesoft/pat/Transformer.java		diff \| blob \| history
src/com/stevesoft/pat/Validator.java		diff \| blob \| history
src/com/stevesoft/pat/WantMoreTextReplaceRule.java		diff \| blob \| history
src/com/stevesoft/pat/oneChar.java		diff \| blob \| history
src/com/stevesoft/pat/parsePerl.java		diff \| blob \| history
src/com/stevesoft/pat/wrap/RandomAccessFileWrap.java		diff \| blob \| history
src/ext/edu/ucsf/rbvi/strucviz2/ChimUtils.java		diff \| blob \| history
src/ext/edu/ucsf/rbvi/strucviz2/ChimeraChain.java		diff \| blob \| history
src/ext/edu/ucsf/rbvi/strucviz2/ChimeraManager.java		diff \| blob \| history
src/ext/edu/ucsf/rbvi/strucviz2/ChimeraResidue.java		diff \| blob \| history
src/ext/edu/ucsf/rbvi/strucviz2/ChimeraTreeModel.java		diff \| blob \| history
src/ext/edu/ucsf/rbvi/strucviz2/StructureManager.java		diff \| blob \| history
src/ext/edu/ucsf/rbvi/strucviz2/port/ListenerThreads.java		diff \| blob \| history
src/ext/vamsas/IRegistryServiceLocator.java		diff \| blob \| history
src/ext/vamsas/Jpred.java		diff \| blob \| history
src/ext/vamsas/JpredServiceLocator.java		diff \| blob \| history
src/ext/vamsas/JpredSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/MuscleWSServiceLocator.java		diff \| blob \| history
src/ext/vamsas/MuscleWSSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/RegistryServiceSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/SeqSearchServiceLocator.java		diff \| blob \| history
src/ext/vamsas/SeqSearchServiceSoapBindingStub.java		diff \| blob \| history
src/ext/vamsas/ServiceHandle.java		diff \| blob \| history
src/ext/vamsas/ServiceHandles.java		diff \| blob \| history
src/jalview/analysis/AAFrequency.java		diff \| blob \| history
src/jalview/analysis/AlignSeq.java		diff \| blob \| history
src/jalview/analysis/AlignmentSorter.java		diff \| blob \| history
src/jalview/analysis/AlignmentUtils.java		diff \| blob \| history
src/jalview/analysis/AnnotationSorter.java		diff \| blob \| history
src/jalview/analysis/CodingUtils.java		diff \| blob \| history
src/jalview/analysis/Conservation.java		diff \| blob \| history
src/jalview/analysis/CrossRef.java		diff \| blob \| history
src/jalview/analysis/Dna.java		diff \| blob \| history
src/jalview/analysis/Finder.java		diff \| blob \| history
src/jalview/analysis/GeneticCodes.java		diff \| blob \| history
src/jalview/analysis/PCA.java		diff \| blob \| history
src/jalview/analysis/Rna.java		diff \| blob \| history
src/jalview/analysis/SequenceIdMatcher.java		diff \| blob \| history
src/jalview/analysis/scoremodels/FeatureDistanceModel.java		diff \| blob \| history
src/jalview/api/AlignViewportI.java		diff \| blob \| history
src/jalview/api/FeatureColourI.java		diff \| blob \| history
src/jalview/api/FeatureRenderer.java		diff \| blob \| history
src/jalview/api/FinderI.java		diff \| blob \| history
src/jalview/api/SplitContainerI.java		diff \| blob \| history
src/jalview/appletgui/APopupMenu.java		diff \| blob \| history
src/jalview/appletgui/AlignFrame.java		diff \| blob \| history
src/jalview/appletgui/AlignViewport.java		diff \| blob \| history
src/jalview/appletgui/AlignmentPanel.java		diff \| blob \| history
src/jalview/appletgui/AnnotationPanel.java		diff \| blob \| history
src/jalview/appletgui/AppletJmol.java		diff \| blob \| history
src/jalview/appletgui/FeatureColourChooser.java		diff \| blob \| history
src/jalview/appletgui/FeatureRenderer.java		diff \| blob \| history
src/jalview/appletgui/Finder.java		diff \| blob \| history
src/jalview/appletgui/OverviewPanel.java		diff \| blob \| history
src/jalview/appletgui/RotatableCanvas.java		diff \| blob \| history
src/jalview/appletgui/ScalePanel.java		diff \| blob \| history
src/jalview/appletgui/SeqCanvas.java		diff \| blob \| history
src/jalview/appletgui/SeqPanel.java		diff \| blob \| history
src/jalview/appletgui/SequenceRenderer.java		diff \| blob \| history
src/jalview/appletgui/TreeCanvas.java		diff \| blob \| history
src/jalview/bin/Cache.java		diff \| blob \| history
src/jalview/bin/Console.java		diff \| blob \| history
src/jalview/bin/HiDPISetting.java		diff \| blob \| history
src/jalview/bin/JalviewJS2.java		diff \| blob \| history
src/jalview/bin/JalviewLite.java		diff \| blob \| history
src/jalview/commands/ChangeCaseCommand.java		diff \| blob \| history
src/jalview/commands/EditCommand.java		diff \| blob \| history
src/jalview/controller/AlignViewController.java		diff \| blob \| history
src/jalview/controller/FeatureSettingsControllerGuiI.java		diff \| blob \| history
src/jalview/datamodel/AlignedCodonFrame.java		diff \| blob \| history
src/jalview/datamodel/Alignment.java		diff \| blob \| history
src/jalview/datamodel/AlignmentAnnotation.java		diff \| blob \| history
src/jalview/datamodel/DBRefEntry.java		diff \| blob \| history
src/jalview/datamodel/DBRefSource.java		diff \| blob \| history
src/jalview/datamodel/GeneLocus.java		diff \| blob \| history
src/jalview/datamodel/HiddenColumns.java		diff \| blob \| history
src/jalview/datamodel/HiddenColumnsCursor.java		diff \| blob \| history
src/jalview/datamodel/MappedFeatures.java		diff \| blob \| history
src/jalview/datamodel/PDBEntry.java		diff \| blob \| history
src/jalview/datamodel/RangeIterator.java		diff \| blob \| history
src/jalview/datamodel/ResidueCount.java		diff \| blob \| history
src/jalview/datamodel/SearchResults.java		diff \| blob \| history
src/jalview/datamodel/SequenceCursor.java		diff \| blob \| history
src/jalview/datamodel/SequenceFeature.java		diff \| blob \| history
src/jalview/datamodel/SequenceGroup.java		diff \| blob \| history
src/jalview/datamodel/SequenceI.java		diff \| blob \| history
src/jalview/datamodel/StartRegionIterator.java		diff \| blob \| history
src/jalview/datamodel/VisibleContigsIterator.java		diff \| blob \| history
src/jalview/datamodel/features/FeatureAttributes.java		diff \| blob \| history
src/jalview/datamodel/features/FeatureMatcher.java		diff \| blob \| history
src/jalview/datamodel/features/FeatureMatcherSet.java		diff \| blob \| history
src/jalview/datamodel/features/FeatureSource.java		diff \| blob \| history
src/jalview/datamodel/features/FeatureStore.java		diff \| blob \| history
src/jalview/datamodel/features/SequenceFeatures.java		diff \| blob \| history
src/jalview/datamodel/features/SequenceFeaturesI.java		diff \| blob \| history
src/jalview/ext/android/SparseDoubleArray.java		diff \| blob \| history
src/jalview/ext/android/SparseIntArray.java		diff \| blob \| history
src/jalview/ext/android/SparseShortArray.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblCds.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblFeatures.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblGene.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblInfo.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblLookup.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblMap.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblSeqProxy.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblSequenceFetcher.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblSymbol.java		diff \| blob \| history
src/jalview/ext/ensembl/EnsemblXref.java		diff \| blob \| history
src/jalview/ext/ensembl/Species.java		diff \| blob \| history
src/jalview/ext/htsjdk/HtsContigDb.java		diff \| blob \| history
src/jalview/ext/htsjdk/VCFReader.java		diff \| blob \| history
src/jalview/ext/jmol/JmolCommands.java		diff \| blob \| history
src/jalview/ext/jmol/JmolParser.java		diff \| blob \| history
src/jalview/ext/pymol/PymolCommands.java		diff \| blob \| history
src/jalview/ext/pymol/PymolManager.java		diff \| blob \| history
src/jalview/ext/rbvi/chimera/ChimeraCommands.java		diff \| blob \| history
src/jalview/ext/rbvi/chimera/ChimeraXCommands.java		diff \| blob \| history
src/jalview/ext/rbvi/chimera/ChimeraXManager.java		diff \| blob \| history
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java		diff \| blob \| history
src/jalview/ext/so/SequenceOntology.java		diff \| blob \| history
src/jalview/fts/api/FTSRestClientI.java		diff \| blob \| history
src/jalview/fts/core/FTSDataColumnPreferences.java		diff \| blob \| history
src/jalview/fts/core/FTSRestClient.java		diff \| blob \| history
src/jalview/fts/core/FTSRestRequest.java		diff \| blob \| history
src/jalview/fts/core/FTSRestResponse.java		diff \| blob \| history
src/jalview/fts/core/GFTSPanel.java		diff \| blob \| history
src/jalview/fts/service/pdb/PDBFTSPanel.java		diff \| blob \| history
src/jalview/fts/service/threedbeacons/TDB_FTSData.java		diff \| blob \| history
src/jalview/fts/service/threedbeacons/TDBeaconsFTSPanel.java		diff \| blob \| history
src/jalview/fts/service/threedbeacons/TDBeaconsFTSRestClient.java		diff \| blob \| history
src/jalview/fts/service/uniprot/UniProtFTSRestClient.java		diff \| blob \| history
src/jalview/fts/service/uniprot/UniprotFTSPanel.java		diff \| blob \| history
src/jalview/gui/APQHandlers.java		diff \| blob \| history
src/jalview/gui/AlignExportOptions.java		diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history
src/jalview/gui/AlignViewport.java		diff \| blob \| history
src/jalview/gui/AlignmentPanel.java		diff \| blob \| history
src/jalview/gui/AnnotationColourChooser.java		diff \| blob \| history
src/jalview/gui/AnnotationColumnChooser.java		diff \| blob \| history
src/jalview/gui/AnnotationExporter.java		diff \| blob \| history
src/jalview/gui/AnnotationLabels.java		diff \| blob \| history
src/jalview/gui/AnnotationPanel.java		diff \| blob \| history
src/jalview/gui/AnnotationRowFilter.java		diff \| blob \| history
src/jalview/gui/AppJmol.java		diff \| blob \| history
src/jalview/gui/AppJmolBinding.java		diff \| blob \| history
src/jalview/gui/AppVarnaBinding.java		diff \| blob \| history
src/jalview/gui/BlogReader.java		diff \| blob \| history
src/jalview/gui/CalculationChooser.java		diff \| blob \| history
src/jalview/gui/ChimeraViewFrame.java		diff \| blob \| history
src/jalview/gui/ColourMenuHelper.java		diff \| blob \| history
src/jalview/gui/Console.java		diff \| blob \| history
src/jalview/gui/CrossRefAction.java		diff \| blob \| history
src/jalview/gui/CutAndPasteTransfer.java		diff \| blob \| history
src/jalview/gui/Desktop.java		diff \| blob \| history
src/jalview/gui/EditNameDialog.java		diff \| blob \| history
src/jalview/gui/FeatureEditor.java		diff \| blob \| history
src/jalview/gui/FeatureSettings.java		diff \| blob \| history
src/jalview/gui/FeatureTypeSettings.java		diff \| blob \| history
src/jalview/gui/Finder.java		diff \| blob \| history
src/jalview/gui/IdCanvas.java		diff \| blob \| history
src/jalview/gui/IdPanel.java		diff \| blob \| history
src/jalview/gui/ImageExporter.java		diff \| blob \| history
src/jalview/gui/JDatabaseTree.java		diff \| blob \| history
src/jalview/gui/JalviewBooleanRadioButtons.java		diff \| blob \| history
src/jalview/gui/JalviewChimeraXBindingModel.java		diff \| blob \| history
src/jalview/gui/JalviewColourChooser.java		diff \| blob \| history
src/jalview/gui/JvOptionPane.java		diff \| blob \| history
src/jalview/gui/JvSwingUtils.java		diff \| blob \| history
src/jalview/gui/OOMWarning.java		diff \| blob \| history
src/jalview/gui/OptsAndParamsPage.java		diff \| blob \| history
src/jalview/gui/OverviewCanvas.java		diff \| blob \| history
src/jalview/gui/OverviewPanel.java		diff \| blob \| history
src/jalview/gui/PCAPanel.java		diff \| blob \| history
src/jalview/gui/PairwiseAlignPanel.java		diff \| blob \| history
src/jalview/gui/PopupMenu.java		diff \| blob \| history
src/jalview/gui/ProgressPanel.java		diff \| blob \| history
src/jalview/gui/PromptUserConfig.java		diff \| blob \| history
src/jalview/gui/PymolBindingModel.java		diff \| blob \| history
src/jalview/gui/PymolViewer.java		diff \| blob \| history
src/jalview/gui/RotatableCanvas.java		diff \| blob \| history
src/jalview/gui/ScalePanel.java		diff \| blob \| history
src/jalview/gui/SeqCanvas.java		diff \| blob \| history
src/jalview/gui/SeqPanel.java		diff \| blob \| history
src/jalview/gui/SequenceRenderer.java		diff \| blob \| history
src/jalview/gui/Slider.java		diff \| blob \| history
src/jalview/gui/SplitFrame.java		diff \| blob \| history
src/jalview/gui/StructureChooser.java		diff \| blob \| history
src/jalview/gui/StructureViewer.java		diff \| blob \| history
src/jalview/gui/TextColourChooser.java		diff \| blob \| history
src/jalview/gui/TreeCanvas.java		diff \| blob \| history
src/jalview/gui/TreePanel.java		diff \| blob \| history
src/jalview/gui/UserDefinedColours.java		diff \| blob \| history
src/jalview/gui/VamsasApplication.java		diff \| blob \| history
src/jalview/gui/ViewSelectionMenu.java		diff \| blob \| history
src/jalview/gui/WsJobParameters.java		diff \| blob \| history
src/jalview/gui/WsParamSetManager.java		diff \| blob \| history
src/jalview/gui/structurechooser/PDBStructureChooserQuerySource.java		diff \| blob \| history
src/jalview/gui/structurechooser/StructureChooserQuerySource.java		diff \| blob \| history
src/jalview/gui/structurechooser/TDBResultAnalyser.java		diff \| blob \| history
src/jalview/io/AnnotationFile.java		diff \| blob \| history
src/jalview/io/AppletFormatAdapter.java		diff \| blob \| history
src/jalview/io/BackupFilenameParts.java		diff \| blob \| history
src/jalview/io/BackupFiles.java		diff \| blob \| history
src/jalview/io/BioJsHTMLOutput.java		diff \| blob \| history
src/jalview/io/EMBLLikeFlatFile.java		diff \| blob \| history
src/jalview/io/FeaturesFile.java		diff \| blob \| history
src/jalview/io/FileFormat.java		diff \| blob \| history
src/jalview/io/FileFormats.java		diff \| blob \| history
src/jalview/io/FileLoader.java		diff \| blob \| history
src/jalview/io/FormatAdapter.java		diff \| blob \| history
src/jalview/io/HtmlSvgOutput.java		diff \| blob \| history
src/jalview/io/IdentifyFile.java		diff \| blob \| history
src/jalview/io/JSONFile.java		diff \| blob \| history
src/jalview/io/JalviewFileChooser.java		diff \| blob \| history
src/jalview/io/JalviewFileFilter.java		diff \| blob \| history
src/jalview/io/JalviewFileView.java		diff \| blob \| history
src/jalview/io/MSFfile.java		diff \| blob \| history
src/jalview/io/ModellerDescription.java		diff \| blob \| history
src/jalview/io/NewickFile.java		diff \| blob \| history
src/jalview/io/PhylipFile.java		diff \| blob \| history
src/jalview/io/PileUpfile.java		diff \| blob \| history
src/jalview/io/SequenceAnnotationReport.java		diff \| blob \| history
src/jalview/io/StructureFile.java		diff \| blob \| history
src/jalview/io/VamsasAppDatastore.java		diff \| blob \| history
src/jalview/io/gff/GffHelperBase.java		diff \| blob \| history
src/jalview/io/gff/InterProScanHelper.java		diff \| blob \| history
src/jalview/io/vamsas/Datasetsequence.java		diff \| blob \| history
src/jalview/io/vamsas/Dbref.java		diff \| blob \| history
src/jalview/io/vamsas/Rangetype.java		diff \| blob \| history
src/jalview/io/vamsas/Sequencemapping.java		diff \| blob \| history
src/jalview/io/vamsas/Tree.java		diff \| blob \| history
src/jalview/io/vcf/VCFLoader.java		diff \| blob \| history
src/jalview/javascript/MouseOverStructureListener.java		diff \| blob \| history
src/jalview/javascript/json/JSON.java		diff \| blob \| history
src/jalview/javascript/web/Client.java		diff \| blob \| history
src/jalview/javascript/web/ClientResponse.java		diff \| blob \| history
src/jalview/jbgui/FilterOption.java		diff \| blob \| history
src/jalview/jbgui/GAlignFrame.java		diff \| blob \| history
src/jalview/jbgui/GAlignmentPanel.java		diff \| blob \| history
src/jalview/jbgui/GCutAndPasteHtmlTransfer.java		diff \| blob \| history
src/jalview/jbgui/GCutAndPasteTransfer.java		diff \| blob \| history
src/jalview/jbgui/GDesktop.java		diff \| blob \| history
src/jalview/jbgui/GFinder.java		diff \| blob \| history
src/jalview/jbgui/GRnaStructureViewer.java		diff \| blob \| history
src/jalview/jbgui/GSliderPanel.java		diff \| blob \| history
src/jalview/jbgui/GSplitFrame.java		diff \| blob \| history
src/jalview/jbgui/GStructureChooser.java		diff \| blob \| history
src/jalview/jbgui/GWebserviceInfo.java		diff \| blob \| history
src/jalview/json/binding/biojs/BioJSRepositoryPojo.java		diff \| blob \| history
src/jalview/math/MatrixI.java		diff \| blob \| history
src/jalview/project/Jalview2XML.java		diff \| blob \| history
src/jalview/renderer/AnnotationRenderer.java		diff \| blob \| history
src/jalview/renderer/OverviewRenderer.java		diff \| blob \| history
src/jalview/renderer/OverviewResColourFinder.java		diff \| blob \| history
src/jalview/renderer/ResidueColourFinder.java		diff \| blob \| history
src/jalview/renderer/seqfeatures/FeatureRenderer.java		diff \| blob \| history
src/jalview/schemes/AnnotationColourGradient.java		diff \| blob \| history
src/jalview/schemes/ColourSchemeProperty.java		diff \| blob \| history
src/jalview/schemes/ColourSchemes.java		diff \| blob \| history
src/jalview/schemes/FeatureColour.java		diff \| blob \| history
src/jalview/schemes/IdColourScheme.java		diff \| blob \| history
src/jalview/schemes/ResidueProperties.java		diff \| blob \| history
src/jalview/structure/AtomSpec.java		diff \| blob \| history
src/jalview/structure/StructureCommand.java		diff \| blob \| history
src/jalview/structure/StructureCommandsBase.java		diff \| blob \| history
src/jalview/structure/StructureCommandsI.java		diff \| blob \| history
src/jalview/structure/StructureSelectionManager.java		diff \| blob \| history
src/jalview/structures/models/AAStructureBindingModel.java		diff \| blob \| history
src/jalview/urls/IdentifiersUrlProvider.java		diff \| blob \| history
src/jalview/util/ColorUtils.java		diff \| blob \| history
src/jalview/util/Comparison.java		diff \| blob \| history
src/jalview/util/DBRefUtils.java		diff \| blob \| history
src/jalview/util/HttpUtils.java		diff \| blob \| history
src/jalview/util/ImageMaker.java		diff \| blob \| history
src/jalview/util/MapList.java		diff \| blob \| history
src/jalview/util/MappingUtils.java		diff \| blob \| history
src/jalview/util/Platform.java		diff \| blob \| history
src/jalview/util/ShortcutKeyMaskExWrapper11.java		diff \| blob \| history
src/jalview/util/StringUtils.java		diff \| blob \| history
src/jalview/util/dialogrunner/DialogRunnerI.java		diff \| blob \| history
src/jalview/util/matcher/Matcher.java		diff \| blob \| history
src/jalview/viewmodel/AlignmentViewport.java		diff \| blob \| history
src/jalview/viewmodel/OverviewDimensionsShowHidden.java		diff \| blob \| history
src/jalview/viewmodel/ViewportRanges.java		diff \| blob \| history
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java		diff \| blob \| history
src/jalview/ws/AWSThread.java		diff \| blob \| history
src/jalview/ws/DBRefFetcher.java		diff \| blob \| history
src/jalview/ws/HttpClientUtils.java		diff \| blob \| history
src/jalview/ws/SequenceFetcher.java		diff \| blob \| history
src/jalview/ws/dbsources/EBIAlfaFold.java		diff \| blob \| history
src/jalview/ws/dbsources/EmblFlatfileSource.java		diff \| blob \| history
src/jalview/ws/dbsources/Pdb.java		diff \| blob \| history
src/jalview/ws/dbsources/Pfam.java		diff \| blob \| history
src/jalview/ws/dbsources/Rfam.java		diff \| blob \| history
src/jalview/ws/dbsources/TDBeacons.java		diff \| blob \| history
src/jalview/ws/dbsources/Uniprot.java		diff \| blob \| history
src/jalview/ws/dbsources/Xfam.java		diff \| blob \| history
src/jalview/ws/ebi/EBIFetchClient.java		diff \| blob \| history
src/jalview/ws/jws1/Discoverer.java		diff \| blob \| history
src/jalview/ws/jws2/AADisorderClient.java		diff \| blob \| history
src/jalview/ws/jws2/AbstractJabaCalcWorker.java		diff \| blob \| history
src/jalview/ws/jws2/Jws2Discoverer.java		diff \| blob \| history
src/jalview/ws/jws2/MsaWSClient.java		diff \| blob \| history
src/jalview/ws/rest/InputType.java		diff \| blob \| history
src/jalview/ws/rest/RestClient.java		diff \| blob \| history
src/jalview/ws/rest/RestJobThread.java		diff \| blob \| history
src/jalview/ws/seqfetcher/ASequenceFetcher.java		diff \| blob \| history
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test/jalview/ws/jabaws/RNAStructExportImport.java		diff \| blob \| history
test/jalview/ws/jws2/ParameterUtilsTest.java		diff \| blob \| history
test/jalview/ws/rest/ShmmrRSBSService.java		diff \| blob \| history
test/jalview/ws/seqfetcher/DbRefFetcherTest.java		diff \| blob \| history
test/jalview/ws/sifts/SiftsClientTest.java		diff \| blob \| history
test/jalview/ws/utils/UrlDownloadClientTest.java		diff \| blob \| history
test/junit/extensions/PA.java		diff \| blob \| history
test/junit/extensions/PrivilegedAccessor.java		diff \| blob \| history
test/mc_view/PDBfileTest.java		diff \| blob \| history

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