JAL-1620 version bump and release notes

author Jim Procter <jprocter@dundee.ac.uk>

Mon, 15 Dec 2014 06:34:15 +0000 (06:34 +0000)

committer Jim Procter <jprocter@dundee.ac.uk>

Mon, 15 Dec 2014 06:34:15 +0000 (06:34 +0000)
author Jim Procter <jprocter@dundee.ac.uk>
Mon, 15 Dec 2014 06:34:15 +0000 (06:34 +0000)
committer Jim Procter <jprocter@dundee.ac.uk>
Mon, 15 Dec 2014 06:34:15 +0000 (06:34 +0000)
diff --git a/README b/README

index 10f032b..cbc93b1 100755 (executable)
--- a/README
+++ b/README
@@ -4,7 +4,7 @@ Jalview Readme
  
  The source is available as a tar file and comes complete with the GNU General Public License. 
  
-To build the application you will need a J2SDK 1.6+. 
+To build the application you will need a J2SDK 1.7+. 
  
  An Ant build file (build.xml) is provided, you will need to install Apache Ant first. 
  Run ant to view usage which will display a list of useful build targets.
diff --git a/RELEASE b/RELEASE

index 11598ab..72e42f6 100644 (file)
--- a/RELEASE
+++ b/RELEASE
@@ -1,2 +1,2 @@
-jalview.release=Release_2_8_2_Branch
-jalview.version=2.8.2
+jalview.release=Release_2_8_2b1_Branch
+jalview.version=2.8.2b1
diff --git a/build.xml b/build.xml

index d8ebe1e..baadc25 100755 (executable)
--- a/build.xml
+++ b/build.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/AddingGroovySupport.html b/doc/AddingGroovySupport.html

index 0cb58c6..41c1be5 100644 (file)
--- a/doc/AddingGroovySupport.html
+++ b/doc/AddingGroovySupport.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/JalviewRNASupport.html b/doc/JalviewRNASupport.html

index 23124f4..2dcff2c 100644 (file)
--- a/doc/JalviewRNASupport.html
+++ b/doc/JalviewRNASupport.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/building.html b/doc/building.html

index 59f4dc3..f8bd96c 100755 (executable)
--- a/doc/building.html
+++ b/doc/building.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/developing.html b/doc/developing.html

index 0e73294..4193184 100644 (file)
--- a/doc/developing.html
+++ b/doc/developing.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/index.html b/doc/index.html

index c551491..d9d811d 100644 (file)
--- a/doc/index.html
+++ b/doc/index.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/doc/newdmobj.html b/doc/newdmobj.html

index d77fc97..2a3cf33 100644 (file)
--- a/doc/newdmobj.html
+++ b/doc/newdmobj.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/assets/css/ie6.css b/examples-jbake/assets/css/ie6.css

index 11c7f65..88ab0b2 100644 (file)
--- a/examples-jbake/assets/css/ie6.css
+++ b/examples-jbake/assets/css/ie6.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/assets/css/ie7.css b/examples-jbake/assets/css/ie7.css

index 27a3f0d..2448046 100644 (file)
--- a/examples-jbake/assets/css/ie7.css
+++ b/examples-jbake/assets/css/ie7.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/assets/css/reset.css b/examples-jbake/assets/css/reset.css

index 71df1ed..37d05af 100644 (file)
--- a/examples-jbake/assets/css/reset.css
+++ b/examples-jbake/assets/css/reset.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/assets/css/style.css b/examples-jbake/assets/css/style.css

index 61a39e9..3c06e5e 100644 (file)
--- a/examples-jbake/assets/css/style.css
+++ b/examples-jbake/assets/css/style.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/assets/exampleFeatures.txt b/examples-jbake/assets/exampleFeatures.txt

index 85fd06f..0e429e4 100755 (executable)
--- a/examples-jbake/assets/exampleFeatures.txt
+++ b/examples-jbake/assets/exampleFeatures.txt
@@ -1,5 +1,5 @@
  #-------------------------------------------------------------------------------
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/examples-jbake/assets/javascript/jalview.js b/examples-jbake/assets/javascript/jalview.js

index 7890854..9196b4a 100644 (file)
--- a/examples-jbake/assets/javascript/jalview.js
+++ b/examples-jbake/assets/javascript/jalview.js
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples-jbake/templates/header.ftl b/examples-jbake/templates/header.ftl

index b0daf29..967c284 100644 (file)
--- a/examples-jbake/templates/header.ftl
+++ b/examples-jbake/templates/header.ftl
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/appletParameters.html b/examples/appletParameters.html

index 2f34c46..b9af1df 100644 (file)
--- a/examples/appletParameters.html
+++ b/examples/appletParameters.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/applets.html b/examples/applets.html

index cc85e86..e48a6b5 100755 (executable)
--- a/examples/applets.html
+++ b/examples/applets.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/css/ie6.css b/examples/css/ie6.css

index 11c7f65..88ab0b2 100644 (file)
--- a/examples/css/ie6.css
+++ b/examples/css/ie6.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/css/ie7.css b/examples/css/ie7.css

index 27a3f0d..2448046 100644 (file)
--- a/examples/css/ie7.css
+++ b/examples/css/ie7.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/css/reset.css b/examples/css/reset.css

index 71df1ed..37d05af 100644 (file)
--- a/examples/css/reset.css
+++ b/examples/css/reset.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/css/style.css b/examples/css/style.css

index 61a39e9..3c06e5e 100644 (file)
--- a/examples/css/style.css
+++ b/examples/css/style.css
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/embedded.html b/examples/embedded.html

index a14dd75..b93910c 100644 (file)
--- a/examples/embedded.html
+++ b/examples/embedded.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/embeddedWJmol.html b/examples/embeddedWJmol.html

index f482ebe..d4aed43 100644 (file)
--- a/examples/embeddedWJmol.html
+++ b/examples/embeddedWJmol.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/exampleFeatures.txt b/examples/exampleFeatures.txt

index 85fd06f..0e429e4 100755 (executable)
--- a/examples/exampleFeatures.txt
+++ b/examples/exampleFeatures.txt
@@ -1,5 +1,5 @@
  #-------------------------------------------------------------------------------
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/examples/formComplete.html b/examples/formComplete.html

index b37c65e..91c7ac6 100644 (file)
--- a/examples/formComplete.html
+++ b/examples/formComplete.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/jalviewLiteJs.html b/examples/jalviewLiteJs.html

index 891e46e..3086d3b 100644 (file)
--- a/examples/jalviewLiteJs.html
+++ b/examples/jalviewLiteJs.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/javascript/jalview.js b/examples/javascript/jalview.js

index 7890854..9196b4a 100644 (file)
--- a/examples/javascript/jalview.js
+++ b/examples/javascript/jalview.js
@@ -1,5 +1,5 @@
  /**
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/javascriptLaunch.html b/examples/javascriptLaunch.html

index 4a9abfe..04ecaa3 100644 (file)
--- a/examples/javascriptLaunch.html
+++ b/examples/javascriptLaunch.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/linkedapplets_ng.html b/examples/linkedapplets_ng.html

index 9c88710..ac35f1b 100644 (file)
--- a/examples/linkedapplets_ng.html
+++ b/examples/linkedapplets_ng.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> 
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_applets.html b/examples/u_applets.html

index 9402c43..a81f905 100644 (file)
--- a/examples/u_applets.html
+++ b/examples/u_applets.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_embedded.html b/examples/u_embedded.html

index 8821474..6821c8a 100644 (file)
--- a/examples/u_embedded.html
+++ b/examples/u_embedded.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_embeddedWJmol.html b/examples/u_embeddedWJmol.html

index 1d2e03b..2d3730a 100644 (file)
--- a/examples/u_embeddedWJmol.html
+++ b/examples/u_embeddedWJmol.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_formComplete.html b/examples/u_formComplete.html

index 005e29a..0d99867 100644 (file)
--- a/examples/u_formComplete.html
+++ b/examples/u_formComplete.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_javascriptLaunch.html b/examples/u_javascriptLaunch.html

index 1ed627b..e6ee24b 100644 (file)
--- a/examples/u_javascriptLaunch.html
+++ b/examples/u_javascriptLaunch.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/examples/u_linkedapplets_ng.html b/examples/u_linkedapplets_ng.html

index 78a1366..5d380d0 100644 (file)
--- a/examples/u_linkedapplets_ng.html
+++ b/examples/u_linkedapplets_ng.html
@@ -1,6 +1,6 @@
  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/help.hs b/help/help.hs

index eba1dd9..567b054 100755 (executable)
--- a/help/help.hs
+++ b/help/help.hs
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="ISO-8859-1" ?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/help.jhm b/help/help.jhm

index af010a4..ad931c8 100755 (executable)
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="ISO-8859-1" ?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/helpTOC.xml b/help/helpTOC.xml

index b67eb6f..d8fd945 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -1,5 +1,5 @@
  <?xml version="1.0" encoding="ISO-8859-1"  ?>
-<!-- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) * 
+<!-- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) * 
         Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. 
         * * Jalview is free software: you can redistribute it and/or * modify it 
         under the terms of the GNU General Public License * as published by the Free 
diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html

index d5ce720..7c56611 100644 (file)
--- a/help/html/calculations/consensus.html
+++ b/help/html/calculations/consensus.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/conservation.html b/help/html/calculations/conservation.html

index d38924a..ca40dd2 100755 (executable)
--- a/help/html/calculations/conservation.html
+++ b/help/html/calculations/conservation.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/pairwise.html b/help/html/calculations/pairwise.html

index 2891f1e..586f880 100755 (executable)
--- a/help/html/calculations/pairwise.html
+++ b/help/html/calculations/pairwise.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/pca.html b/help/html/calculations/pca.html

index 66dbabd..7b7b935 100755 (executable)
--- a/help/html/calculations/pca.html
+++ b/help/html/calculations/pca.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/quality.html b/help/html/calculations/quality.html

index cab1ea8..a16193a 100755 (executable)
--- a/help/html/calculations/quality.html
+++ b/help/html/calculations/quality.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/recoverInputdata.html b/help/html/calculations/recoverInputdata.html

index 28d40c9..32f492b 100644 (file)
--- a/help/html/calculations/recoverInputdata.html
+++ b/help/html/calculations/recoverInputdata.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html

index ccc8457..b43afea 100755 (executable)
--- a/help/html/calculations/redundancy.html
+++ b/help/html/calculations/redundancy.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/scorematrices.html b/help/html/calculations/scorematrices.html

index 5c4a498..cb07a49 100644 (file)
--- a/help/html/calculations/scorematrices.html
+++ b/help/html/calculations/scorematrices.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/sorting.html b/help/html/calculations/sorting.html

index d12a518..af37b83 100755 (executable)
--- a/help/html/calculations/sorting.html
+++ b/help/html/calculations/sorting.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/structureconsensus.html b/help/html/calculations/structureconsensus.html

index 6e797b1..ccc249f 100755 (executable)
--- a/help/html/calculations/structureconsensus.html
+++ b/help/html/calculations/structureconsensus.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/tree.html b/help/html/calculations/tree.html

index a01c7be..b5f574b 100755 (executable)
--- a/help/html/calculations/tree.html
+++ b/help/html/calculations/tree.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/calculations/treeviewer.html b/help/html/calculations/treeviewer.html

index 0205ddd..91dfddb 100755 (executable)
--- a/help/html/calculations/treeviewer.html
+++ b/help/html/calculations/treeviewer.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/abovePID.html b/help/html/colourSchemes/abovePID.html

index 74dd665..bdcd65e 100755 (executable)
--- a/help/html/colourSchemes/abovePID.html
+++ b/help/html/colourSchemes/abovePID.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/annotationColouring.html b/help/html/colourSchemes/annotationColouring.html

index 5100c6b..55e04c3 100755 (executable)
--- a/help/html/colourSchemes/annotationColouring.html
+++ b/help/html/colourSchemes/annotationColouring.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/blosum.html b/help/html/colourSchemes/blosum.html

index 338ca55..f9108b6 100755 (executable)
--- a/help/html/colourSchemes/blosum.html
+++ b/help/html/colourSchemes/blosum.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/buried.html b/help/html/colourSchemes/buried.html

index 5943d36..c96df03 100755 (executable)
--- a/help/html/colourSchemes/buried.html
+++ b/help/html/colourSchemes/buried.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/clustal.html b/help/html/colourSchemes/clustal.html

index 33455dc..195171e 100755 (executable)
--- a/help/html/colourSchemes/clustal.html
+++ b/help/html/colourSchemes/clustal.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/conservation.html b/help/html/colourSchemes/conservation.html

index 5ceba85..7ad14f8 100755 (executable)
--- a/help/html/colourSchemes/conservation.html
+++ b/help/html/colourSchemes/conservation.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/helix.html b/help/html/colourSchemes/helix.html

index 8c698c0..0ad6f13 100755 (executable)
--- a/help/html/colourSchemes/helix.html
+++ b/help/html/colourSchemes/helix.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/hydrophobic.html b/help/html/colourSchemes/hydrophobic.html

index 6b4cf2d..c8e7b53 100755 (executable)
--- a/help/html/colourSchemes/hydrophobic.html
+++ b/help/html/colourSchemes/hydrophobic.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/index.html b/help/html/colourSchemes/index.html

index 450e1aa..b072c38 100755 (executable)
--- a/help/html/colourSchemes/index.html
+++ b/help/html/colourSchemes/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/nucleotide.html b/help/html/colourSchemes/nucleotide.html

index 065c818..4327132 100755 (executable)
--- a/help/html/colourSchemes/nucleotide.html
+++ b/help/html/colourSchemes/nucleotide.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/pid.html b/help/html/colourSchemes/pid.html

index d4e70fb..0b006a6 100755 (executable)
--- a/help/html/colourSchemes/pid.html
+++ b/help/html/colourSchemes/pid.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/purinepyrimidine.html b/help/html/colourSchemes/purinepyrimidine.html

index 4337d48..1bcb871 100644 (file)
--- a/help/html/colourSchemes/purinepyrimidine.html
+++ b/help/html/colourSchemes/purinepyrimidine.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/rnahelicesColouring.html b/help/html/colourSchemes/rnahelicesColouring.html

index d9f6be3..1da773c 100644 (file)
--- a/help/html/colourSchemes/rnahelicesColouring.html
+++ b/help/html/colourSchemes/rnahelicesColouring.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/strand.html b/help/html/colourSchemes/strand.html

index fe7c469..9be7b2a 100755 (executable)
--- a/help/html/colourSchemes/strand.html
+++ b/help/html/colourSchemes/strand.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/taylor.html b/help/html/colourSchemes/taylor.html

index a5c4f05..b1c6749 100755 (executable)
--- a/help/html/colourSchemes/taylor.html
+++ b/help/html/colourSchemes/taylor.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/textcolour.html b/help/html/colourSchemes/textcolour.html

index a983e14..50beab9 100644 (file)
--- a/help/html/colourSchemes/textcolour.html
+++ b/help/html/colourSchemes/textcolour.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/turn.html b/help/html/colourSchemes/turn.html

index 87dbe37..c0239c4 100755 (executable)
--- a/help/html/colourSchemes/turn.html
+++ b/help/html/colourSchemes/turn.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html

index 5eacca9..3d41a75 100755 (executable)
--- a/help/html/colourSchemes/user.html
+++ b/help/html/colourSchemes/user.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/colourSchemes/zappo.html b/help/html/colourSchemes/zappo.html

index db025c0..61e2f28 100755 (executable)
--- a/help/html/colourSchemes/zappo.html
+++ b/help/html/colourSchemes/zappo.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/editing/index.html b/help/html/editing/index.html

index ac07168..de1303c 100755 (executable)
--- a/help/html/editing/index.html
+++ b/help/html/editing/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/annotation.html b/help/html/features/annotation.html

index 01d9f64..b3e09c8 100755 (executable)
--- a/help/html/features/annotation.html
+++ b/help/html/features/annotation.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/annotationsFormat.html b/help/html/features/annotationsFormat.html

index 141379f..59f3122 100755 (executable)
--- a/help/html/features/annotationsFormat.html
+++ b/help/html/features/annotationsFormat.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/chimera.html b/help/html/features/chimera.html

index dbaad73..a917c13 100644 (file)
--- a/help/html/features/chimera.html
+++ b/help/html/features/chimera.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/clarguments.html b/help/html/features/clarguments.html

index 2a040fe..27b4cb3 100644 (file)
--- a/help/html/features/clarguments.html
+++ b/help/html/features/clarguments.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/codingfeatures.html b/help/html/features/codingfeatures.html

index a436780..b2b23e3 100644 (file)
--- a/help/html/features/codingfeatures.html
+++ b/help/html/features/codingfeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/commandline.html b/help/html/features/commandline.html

index 6d24c0c..731f9ff 100644 (file)
--- a/help/html/features/commandline.html
+++ b/help/html/features/commandline.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/creatinFeatures.html b/help/html/features/creatinFeatures.html

index e7e8a8e..644e745 100644 (file)
--- a/help/html/features/creatinFeatures.html
+++ b/help/html/features/creatinFeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/cursorMode.html b/help/html/features/cursorMode.html

index 936016f..045efae 100755 (executable)
--- a/help/html/features/cursorMode.html
+++ b/help/html/features/cursorMode.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/dasfeatures.html b/help/html/features/dasfeatures.html

index 0690111..9c99524 100644 (file)
--- a/help/html/features/dasfeatures.html
+++ b/help/html/features/dasfeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/dassettings.html b/help/html/features/dassettings.html

index 86162dc..f2ecd44 100644 (file)
--- a/help/html/features/dassettings.html
+++ b/help/html/features/dassettings.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/editingFeatures.html b/help/html/features/editingFeatures.html

index 6f229df..0f67b46 100644 (file)
--- a/help/html/features/editingFeatures.html
+++ b/help/html/features/editingFeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/featuresFormat.html b/help/html/features/featuresFormat.html

index 32b4ccb..ee7f51c 100755 (executable)
--- a/help/html/features/featuresFormat.html
+++ b/help/html/features/featuresFormat.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/featureschemes.html b/help/html/features/featureschemes.html

index 6b14021..121c505 100644 (file)
--- a/help/html/features/featureschemes.html
+++ b/help/html/features/featureschemes.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/featuresettings.html b/help/html/features/featuresettings.html

index 3830302..51f97a2 100755 (executable)
--- a/help/html/features/featuresettings.html
+++ b/help/html/features/featuresettings.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/groovy.html b/help/html/features/groovy.html

index 6559fd1..c7ff5be 100644 (file)
--- a/help/html/features/groovy.html
+++ b/help/html/features/groovy.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/hiddenRegions.html b/help/html/features/hiddenRegions.html

index 63920f5..b482b3b 100644 (file)
--- a/help/html/features/hiddenRegions.html
+++ b/help/html/features/hiddenRegions.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/jalarchive.html b/help/html/features/jalarchive.html

index 472114a..aa0c2ff 100755 (executable)
--- a/help/html/features/jalarchive.html
+++ b/help/html/features/jalarchive.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/jmol.html b/help/html/features/jmol.html

index 45e5526..40b5b73 100644 (file)
--- a/help/html/features/jmol.html
+++ b/help/html/features/jmol.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/multipleViews.html b/help/html/features/multipleViews.html

index b1ccf4b..2dbdc6b 100644 (file)
--- a/help/html/features/multipleViews.html
+++ b/help/html/features/multipleViews.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/newkeystrokes.html b/help/html/features/newkeystrokes.html

index d4c532e..35dc5ad 100644 (file)
--- a/help/html/features/newkeystrokes.html
+++ b/help/html/features/newkeystrokes.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/overview.html b/help/html/features/overview.html

index 50d45f2..e1207d5 100755 (executable)
--- a/help/html/features/overview.html
+++ b/help/html/features/overview.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/pdbviewer.html b/help/html/features/pdbviewer.html

index 8deebae..2bfaeb6 100755 (executable)
--- a/help/html/features/pdbviewer.html
+++ b/help/html/features/pdbviewer.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html

index 657359e..e17634b 100755 (executable)
--- a/help/html/features/preferences.html
+++ b/help/html/features/preferences.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/search.html b/help/html/features/search.html

index 47c0a3b..dc89ae5 100755 (executable)
--- a/help/html/features/search.html
+++ b/help/html/features/search.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/seqfeatures.html b/help/html/features/seqfeatures.html

index 842c93a..b016141 100755 (executable)
--- a/help/html/features/seqfeatures.html
+++ b/help/html/features/seqfeatures.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/seqfetch.html b/help/html/features/seqfetch.html

index 5f0744d..ffd1cb3 100755 (executable)
--- a/help/html/features/seqfetch.html
+++ b/help/html/features/seqfetch.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/seqmappings.html b/help/html/features/seqmappings.html

index 3731ad1..9c20188 100644 (file)
--- a/help/html/features/seqmappings.html
+++ b/help/html/features/seqmappings.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/varna.html b/help/html/features/varna.html

index 290135c..20bc0ac 100644 (file)
--- a/help/html/features/varna.html
+++ b/help/html/features/varna.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/viewingpdbs.html b/help/html/features/viewingpdbs.html

index 99f17fe..a57a96f 100755 (executable)
--- a/help/html/features/viewingpdbs.html
+++ b/help/html/features/viewingpdbs.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/wrap.html b/help/html/features/wrap.html

index 883a024..ab620d1 100755 (executable)
--- a/help/html/features/wrap.html
+++ b/help/html/features/wrap.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/features/xsspannotation.html b/help/html/features/xsspannotation.html

index 0dc7475..9217bbe 100644 (file)
--- a/help/html/features/xsspannotation.html
+++ b/help/html/features/xsspannotation.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/index.html b/help/html/index.html

index 11b6f2a..2e091f0 100755 (executable)
--- a/help/html/index.html
+++ b/help/html/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/export.html b/help/html/io/export.html

index 518729b..22c5f6d 100755 (executable)
--- a/help/html/io/export.html
+++ b/help/html/io/export.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/exportseqreport.html b/help/html/io/exportseqreport.html

index b1afc3b..6d2c365 100644 (file)
--- a/help/html/io/exportseqreport.html
+++ b/help/html/io/exportseqreport.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/fileformats.html b/help/html/io/fileformats.html

index 6017d4b..de15dab 100755 (executable)
--- a/help/html/io/fileformats.html
+++ b/help/html/io/fileformats.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/index.html b/help/html/io/index.html

index 0a4c7fa..3c36402 100755 (executable)
--- a/help/html/io/index.html
+++ b/help/html/io/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/modellerpir.html b/help/html/io/modellerpir.html

index 3e00831..7789803 100755 (executable)
--- a/help/html/io/modellerpir.html
+++ b/help/html/io/modellerpir.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/io/tcoffeescores.html b/help/html/io/tcoffeescores.html

index 23a167c..1e8ddc2 100644 (file)
--- a/help/html/io/tcoffeescores.html
+++ b/help/html/io/tcoffeescores.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/keys.html b/help/html/keys.html

index 545f08d..a5af288 100755 (executable)
--- a/help/html/keys.html
+++ b/help/html/keys.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/memory.html b/help/html/memory.html

index 1cb9596..6cb683e 100755 (executable)
--- a/help/html/memory.html
+++ b/help/html/memory.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alignmentMenu.html b/help/html/menus/alignmentMenu.html

index 95dcad8..966c005 100755 (executable)
--- a/help/html/menus/alignmentMenu.html
+++ b/help/html/menus/alignmentMenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwannotation.html b/help/html/menus/alwannotation.html

index 2f98542..e120aa2 100755 (executable)
--- a/help/html/menus/alwannotation.html
+++ b/help/html/menus/alwannotation.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwannotationpanel.html b/help/html/menus/alwannotationpanel.html

index 7375e63..c3f8525 100755 (executable)
--- a/help/html/menus/alwannotationpanel.html
+++ b/help/html/menus/alwannotationpanel.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwcalculate.html b/help/html/menus/alwcalculate.html

index 1f0474a..22387df 100755 (executable)
--- a/help/html/menus/alwcalculate.html
+++ b/help/html/menus/alwcalculate.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwcolour.html b/help/html/menus/alwcolour.html

index 2ad79d5..8d21916 100755 (executable)
--- a/help/html/menus/alwcolour.html
+++ b/help/html/menus/alwcolour.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwedit.html b/help/html/menus/alwedit.html

index 67b3d2e..933a1bf 100755 (executable)
--- a/help/html/menus/alwedit.html
+++ b/help/html/menus/alwedit.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwfile.html b/help/html/menus/alwfile.html

index bf459e3..0605040 100755 (executable)
--- a/help/html/menus/alwfile.html
+++ b/help/html/menus/alwfile.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwformat.html b/help/html/menus/alwformat.html

index d0a46a0..c48eedd 100644 (file)
--- a/help/html/menus/alwformat.html
+++ b/help/html/menus/alwformat.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwselect.html b/help/html/menus/alwselect.html

index c40cf09..fa83f1a 100644 (file)
--- a/help/html/menus/alwselect.html
+++ b/help/html/menus/alwselect.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/alwview.html b/help/html/menus/alwview.html

index e8fce84..23b0103 100755 (executable)
--- a/help/html/menus/alwview.html
+++ b/help/html/menus/alwview.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/desktopMenu.html b/help/html/menus/desktopMenu.html

index 153a79a..df7e6fa 100755 (executable)
--- a/help/html/menus/desktopMenu.html
+++ b/help/html/menus/desktopMenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/index.html b/help/html/menus/index.html

index 7e1ed70..0f14eae 100755 (executable)
--- a/help/html/menus/index.html
+++ b/help/html/menus/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/popupMenu.html b/help/html/menus/popupMenu.html

index 63bb815..fd3e6cf 100755 (executable)
--- a/help/html/menus/popupMenu.html
+++ b/help/html/menus/popupMenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/menus/wsmenu.html b/help/html/menus/wsmenu.html

index 9b8d66c..193a3c8 100755 (executable)
--- a/help/html/menus/wsmenu.html
+++ b/help/html/menus/wsmenu.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/misc/aaproperties.html b/help/html/misc/aaproperties.html

index d65ca4d..3ec29fa 100755 (executable)
--- a/help/html/misc/aaproperties.html
+++ b/help/html/misc/aaproperties.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/misc/aminoAcids.html b/help/html/misc/aminoAcids.html

index 5d93f95..048d361 100755 (executable)
--- a/help/html/misc/aminoAcids.html
+++ b/help/html/misc/aminoAcids.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/misc/geneticCode.html b/help/html/misc/geneticCode.html

index 5695dc4..6868ccd 100755 (executable)
--- a/help/html/misc/geneticCode.html
+++ b/help/html/misc/geneticCode.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/na/index.html b/help/html/na/index.html

index 844b6b7..4bff53b 100644 (file)
--- a/help/html/na/index.html
+++ b/help/html/na/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/privacy.html b/help/html/privacy.html

index e19122c..d3313cf 100644 (file)
--- a/help/html/privacy.html
+++ b/help/html/privacy.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/releases.html b/help/html/releases.html

index 92a39cb..a97c11c 100755 (executable)
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
@@ -43,6 +43,24 @@
                         </td>
                 </tr>
                 <tr>
+                       <td width="60" nowrap>
+                               <div align="center">
+                                       <strong><a name="Jalview.2.8.2b1">2.8.2b1</a><br /> <em>15/12/2014</em></strong>
+                               </div>
+                       </td>
+                       <td>
+                               <div align="center">
+                               </div>
+                       </td>
+                       <td>
+                               <div align="center">
+                                       <ul><li>Reinstated the display of default example file on startup</li>
+                                       <li>All pairs shown in Jalview window when viewing result of pairwise alignment</li>
+                                       </ul>
+                               </div>
+                       </td>
+               </tr>
+               <tr>
                         <td><div align="center">
                                         <strong><a name="Jalview.2.8.2">2.8.2</a><br /> <em>3/12/2014</em></strong>
                                 </div></td>
diff --git a/help/html/vamsas/index.html b/help/html/vamsas/index.html

index fcc9b0c..a949459 100644 (file)
--- a/help/html/vamsas/index.html
+++ b/help/html/vamsas/index.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/AACon.html b/help/html/webServices/AACon.html

index 9653e2c..4dd73fe 100644 (file)
--- a/help/html/webServices/AACon.html
+++ b/help/html/webServices/AACon.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/JABAWS.html b/help/html/webServices/JABAWS.html

index 8c964b4..4ed0645 100644 (file)
--- a/help/html/webServices/JABAWS.html
+++ b/help/html/webServices/JABAWS.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/RNAalifold.html b/help/html/webServices/RNAalifold.html

index 6c3c6b5..1771d10 100644 (file)
--- a/help/html/webServices/RNAalifold.html
+++ b/help/html/webServices/RNAalifold.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/dbreffetcher.html b/help/html/webServices/dbreffetcher.html

index b02f940..5f1cea7 100644 (file)
--- a/help/html/webServices/dbreffetcher.html
+++ b/help/html/webServices/dbreffetcher.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/index.html b/help/html/webServices/index.html

index 29c74a9..f0dbd04 100755 (executable)
--- a/help/html/webServices/index.html
+++ b/help/html/webServices/index.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/jnet.html b/help/html/webServices/jnet.html

index 5555c73..7bba590 100755 (executable)
--- a/help/html/webServices/jnet.html
+++ b/help/html/webServices/jnet.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/msaclient.html b/help/html/webServices/msaclient.html

index d1bedcb..1bc0114 100644 (file)
--- a/help/html/webServices/msaclient.html
+++ b/help/html/webServices/msaclient.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/newsreader.html b/help/html/webServices/newsreader.html

index 79709fd..c0e5ade 100644 (file)
--- a/help/html/webServices/newsreader.html
+++ b/help/html/webServices/newsreader.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/proteinDisorder.html b/help/html/webServices/proteinDisorder.html

index c267269..2f0506e 100644 (file)
--- a/help/html/webServices/proteinDisorder.html
+++ b/help/html/webServices/proteinDisorder.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/shmr.html b/help/html/webServices/shmr.html

index 5d67f8a..09a0a39 100755 (executable)
--- a/help/html/webServices/shmr.html
+++ b/help/html/webServices/shmr.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/urllinks.html b/help/html/webServices/urllinks.html

index c9d9832..fb1e9f3 100644 (file)
--- a/help/html/webServices/urllinks.html
+++ b/help/html/webServices/urllinks.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/webServicesParams.html b/help/html/webServices/webServicesParams.html

index ba4a161..0917810 100644 (file)
--- a/help/html/webServices/webServicesParams.html
+++ b/help/html/webServices/webServicesParams.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/webServices/webServicesPrefs.html b/help/html/webServices/webServicesPrefs.html

index c00b7f0..0f16f67 100644 (file)
--- a/help/html/webServices/webServicesPrefs.html
+++ b/help/html/webServices/webServicesPrefs.html
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html

index a5d5d4a..d9d25f4 100755 (executable)
--- a/help/html/whatsNew.html
+++ b/help/html/whatsNew.html
@@ -1,6 +1,6 @@
  <html>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/jalview-jalopy.xml b/jalview-jalopy.xml

index 6260057..fab7981 100755 (executable)
--- a/jalview-jalopy.xml
+++ b/jalview-jalopy.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/nbbuild.xml b/nbbuild.xml

index 1fbf3c9..f672531 100644 (file)
--- a/nbbuild.xml
+++ b/nbbuild.xml
@@ -1,5 +1,5 @@
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/nbproject/project.xml b/nbproject/project.xml

index 6c49988..e64189c 100644 (file)
--- a/nbproject/project.xml
+++ b/nbproject/project.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/resources/embl_mapping.xml b/resources/embl_mapping.xml

index b6aae2c..f7bc20c 100644 (file)
--- a/resources/embl_mapping.xml
+++ b/resources/embl_mapping.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/resources/uniprot_mapping.xml b/resources/uniprot_mapping.xml

index 092a3c7..b91839c 100755 (executable)
--- a/resources/uniprot_mapping.xml
+++ b/resources/uniprot_mapping.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/JalviewWsParamSet.xsd b/schemas/JalviewWsParamSet.xsd

index 0e06413..d765c2f 100644 (file)
--- a/schemas/JalviewWsParamSet.xsd
+++ b/schemas/JalviewWsParamSet.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/castor-mapping.xsd b/schemas/castor-mapping.xsd

index edfc92d..ae6fac0 100644 (file)
--- a/schemas/castor-mapping.xsd
+++ b/schemas/castor-mapping.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/jalview.nodesc.properties b/schemas/jalview.nodesc.properties

index 3ecf2a4..ce68141 100644 (file)
--- a/schemas/jalview.nodesc.properties
+++ b/schemas/jalview.nodesc.properties
@@ -1,5 +1,5 @@
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/schemas/jalview.properties b/schemas/jalview.properties

index 625c06d..2e39dc6 100644 (file)
--- a/schemas/jalview.properties
+++ b/schemas/jalview.properties
@@ -1,5 +1,5 @@
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd

index 27f952d..3389835 100755 (executable)
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/jalviewJvV1.xsd b/schemas/jalviewJvV1.xsd

index 92218ff..efff68c 100644 (file)
--- a/schemas/jalviewJvV1.xsd
+++ b/schemas/jalviewJvV1.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd

index 646a222..72ae35c 100755 (executable)
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/schemas/vamsasJvV1.xsd b/schemas/vamsasJvV1.xsd

index b6d79fa..e826695 100644 (file)
--- a/schemas/vamsasJvV1.xsd
+++ b/schemas/vamsasJvV1.xsd
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/AppletPDBCanvas.java b/src/MCview/AppletPDBCanvas.java

index a1bb272..6729ed5 100644 (file)
--- a/src/MCview/AppletPDBCanvas.java
+++ b/src/MCview/AppletPDBCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/AppletPDBViewer.java b/src/MCview/AppletPDBViewer.java

index b55dde5..0675af1 100644 (file)
--- a/src/MCview/AppletPDBViewer.java
+++ b/src/MCview/AppletPDBViewer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/Atom.java b/src/MCview/Atom.java

index 9254fd8..96faa5a 100755 (executable)
--- a/src/MCview/Atom.java
+++ b/src/MCview/Atom.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/Bond.java b/src/MCview/Bond.java

index f76cbc2..547dc5f 100755 (executable)
--- a/src/MCview/Bond.java
+++ b/src/MCview/Bond.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/MCMatrix.java b/src/MCview/MCMatrix.java

index 352e926..37347a6 100755 (executable)
--- a/src/MCview/MCMatrix.java
+++ b/src/MCview/MCMatrix.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/PDBCanvas.java b/src/MCview/PDBCanvas.java

index dc0f718..edfdff2 100644 (file)
--- a/src/MCview/PDBCanvas.java
+++ b/src/MCview/PDBCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/PDBChain.java b/src/MCview/PDBChain.java

index 49d7d4a..9cf7097 100755 (executable)
--- a/src/MCview/PDBChain.java
+++ b/src/MCview/PDBChain.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/PDBViewer.java b/src/MCview/PDBViewer.java

index bf285b9..e16241b 100755 (executable)
--- a/src/MCview/PDBViewer.java
+++ b/src/MCview/PDBViewer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/PDBfile.java b/src/MCview/PDBfile.java

index 691fdcd..cb36989 100755 (executable)
--- a/src/MCview/PDBfile.java
+++ b/src/MCview/PDBfile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java

index 6789fe1..b1d8413 100755 (executable)
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/MCview/Zsort.java b/src/MCview/Zsort.java

index 16731ef..3209e17 100755 (executable)
--- a/src/MCview/Zsort.java
+++ b/src/MCview/Zsort.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/castor.properties b/src/castor.properties

index c691302..e41d930 100644 (file)
--- a/src/castor.properties
+++ b/src/castor.properties
@@ -1,5 +1,5 @@
  ###############################################################################
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/src/ext/vamsas/IRegistry.java b/src/ext/vamsas/IRegistry.java

index 51e3117..56781cc 100755 (executable)
--- a/src/ext/vamsas/IRegistry.java
+++ b/src/ext/vamsas/IRegistry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/IRegistryService.java b/src/ext/vamsas/IRegistryService.java

index 6aae76a..922cb91 100755 (executable)
--- a/src/ext/vamsas/IRegistryService.java
+++ b/src/ext/vamsas/IRegistryService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/IRegistryServiceLocator.java b/src/ext/vamsas/IRegistryServiceLocator.java

index 3473d4c..dee68a9 100755 (executable)
--- a/src/ext/vamsas/IRegistryServiceLocator.java
+++ b/src/ext/vamsas/IRegistryServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/Jpred.java b/src/ext/vamsas/Jpred.java

index a273332..20ae990 100755 (executable)
--- a/src/ext/vamsas/Jpred.java
+++ b/src/ext/vamsas/Jpred.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/JpredService.java b/src/ext/vamsas/JpredService.java

index 9f894a8..4b10059 100755 (executable)
--- a/src/ext/vamsas/JpredService.java
+++ b/src/ext/vamsas/JpredService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/JpredServiceLocator.java b/src/ext/vamsas/JpredServiceLocator.java

index 79e9636..aa651c3 100755 (executable)
--- a/src/ext/vamsas/JpredServiceLocator.java
+++ b/src/ext/vamsas/JpredServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/JpredSoapBindingStub.java b/src/ext/vamsas/JpredSoapBindingStub.java

index b84eef9..fb96317 100755 (executable)
--- a/src/ext/vamsas/JpredSoapBindingStub.java
+++ b/src/ext/vamsas/JpredSoapBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/MuscleWS.java b/src/ext/vamsas/MuscleWS.java

index 2426ae2..2ec376f 100755 (executable)
--- a/src/ext/vamsas/MuscleWS.java
+++ b/src/ext/vamsas/MuscleWS.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/MuscleWSService.java b/src/ext/vamsas/MuscleWSService.java

index 3fa8103..5876ac9 100755 (executable)
--- a/src/ext/vamsas/MuscleWSService.java
+++ b/src/ext/vamsas/MuscleWSService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/MuscleWSServiceLocator.java b/src/ext/vamsas/MuscleWSServiceLocator.java

index 9a580f8..5b7719d 100755 (executable)
--- a/src/ext/vamsas/MuscleWSServiceLocator.java
+++ b/src/ext/vamsas/MuscleWSServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/MuscleWSSoapBindingStub.java b/src/ext/vamsas/MuscleWSSoapBindingStub.java

index d5484af..b6591c3 100755 (executable)
--- a/src/ext/vamsas/MuscleWSSoapBindingStub.java
+++ b/src/ext/vamsas/MuscleWSSoapBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/RegistryServiceSoapBindingStub.java b/src/ext/vamsas/RegistryServiceSoapBindingStub.java

index 810ce40..e7ccbc0 100755 (executable)
--- a/src/ext/vamsas/RegistryServiceSoapBindingStub.java
+++ b/src/ext/vamsas/RegistryServiceSoapBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/SeqSearchI.java b/src/ext/vamsas/SeqSearchI.java

index 1e54f13..fe6abcf 100644 (file)
--- a/src/ext/vamsas/SeqSearchI.java
+++ b/src/ext/vamsas/SeqSearchI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/SeqSearchServiceLocator.java b/src/ext/vamsas/SeqSearchServiceLocator.java

index 75f46a3..cc48e78 100644 (file)
--- a/src/ext/vamsas/SeqSearchServiceLocator.java
+++ b/src/ext/vamsas/SeqSearchServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/SeqSearchServiceService.java b/src/ext/vamsas/SeqSearchServiceService.java

index d7b603b..cdf8f15 100644 (file)
--- a/src/ext/vamsas/SeqSearchServiceService.java
+++ b/src/ext/vamsas/SeqSearchServiceService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java

index c507a94..9b453bb 100644 (file)
--- a/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
+++ b/src/ext/vamsas/SeqSearchServiceSoapBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/ServiceHandle.java b/src/ext/vamsas/ServiceHandle.java

index b4b6c39..a9c46b8 100755 (executable)
--- a/src/ext/vamsas/ServiceHandle.java
+++ b/src/ext/vamsas/ServiceHandle.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/ext/vamsas/ServiceHandles.java b/src/ext/vamsas/ServiceHandles.java

index a0156c1..ab69a8b 100755 (executable)
--- a/src/ext/vamsas/ServiceHandles.java
+++ b/src/ext/vamsas/ServiceHandles.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/AAFrequency.java b/src/jalview/analysis/AAFrequency.java

index 69d32cb..8025882 100755 (executable)
--- a/src/jalview/analysis/AAFrequency.java
+++ b/src/jalview/analysis/AAFrequency.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java

index ba7e520..eacceb0 100755 (executable)
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java

index b7cfbbd..125ca15 100755 (executable)
--- a/src/jalview/analysis/AlignmentSorter.java
+++ b/src/jalview/analysis/AlignmentSorter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/AlignmentUtils.java b/src/jalview/analysis/AlignmentUtils.java

index 6385fa7..64d5cd0 100644 (file)
--- a/src/jalview/analysis/AlignmentUtils.java
+++ b/src/jalview/analysis/AlignmentUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/Conservation.java b/src/jalview/analysis/Conservation.java

index 4d64685..0625a9a 100755 (executable)
--- a/src/jalview/analysis/Conservation.java
+++ b/src/jalview/analysis/Conservation.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java

index fa0fe2f..b3e9f34 100644 (file)
--- a/src/jalview/analysis/CrossRef.java
+++ b/src/jalview/analysis/CrossRef.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/Dna.java b/src/jalview/analysis/Dna.java

index 2e56e67..79dcab4 100644 (file)
--- a/src/jalview/analysis/Dna.java
+++ b/src/jalview/analysis/Dna.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/Finder.java b/src/jalview/analysis/Finder.java

index 96151d7..edf9deb 100644 (file)
--- a/src/jalview/analysis/Finder.java
+++ b/src/jalview/analysis/Finder.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/Grouping.java b/src/jalview/analysis/Grouping.java

index e4c9cea..8ed3a7b 100644 (file)
--- a/src/jalview/analysis/Grouping.java
+++ b/src/jalview/analysis/Grouping.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/NJTree.java b/src/jalview/analysis/NJTree.java

index a8ca3f7..7852e4d 100644 (file)
--- a/src/jalview/analysis/NJTree.java
+++ b/src/jalview/analysis/NJTree.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/PCA.java b/src/jalview/analysis/PCA.java

index f34fe83..39ed194 100755 (executable)
--- a/src/jalview/analysis/PCA.java
+++ b/src/jalview/analysis/PCA.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/ParseProperties.java b/src/jalview/analysis/ParseProperties.java

index 69c5c07..8a1df43 100644 (file)
--- a/src/jalview/analysis/ParseProperties.java
+++ b/src/jalview/analysis/ParseProperties.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/Rna.java b/src/jalview/analysis/Rna.java

index 227bf09..05573d7 100644 (file)
--- a/src/jalview/analysis/Rna.java
+++ b/src/jalview/analysis/Rna.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/SecStrConsensus.java b/src/jalview/analysis/SecStrConsensus.java

index 1400a64..ae41e4d 100644 (file)
--- a/src/jalview/analysis/SecStrConsensus.java
+++ b/src/jalview/analysis/SecStrConsensus.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java

index 5c6b99b..d2b5b72 100755 (executable)
--- a/src/jalview/analysis/SeqsetUtils.java
+++ b/src/jalview/analysis/SeqsetUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java

index aec7faf..f14afb2 100755 (executable)
--- a/src/jalview/analysis/SequenceIdMatcher.java
+++ b/src/jalview/analysis/SequenceIdMatcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/StructureFrequency.java b/src/jalview/analysis/StructureFrequency.java

index dc0212e..001a034 100644 (file)
--- a/src/jalview/analysis/StructureFrequency.java
+++ b/src/jalview/analysis/StructureFrequency.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/WUSSParseException.java b/src/jalview/analysis/WUSSParseException.java

index 56698c6..215b994 100644 (file)
--- a/src/jalview/analysis/WUSSParseException.java
+++ b/src/jalview/analysis/WUSSParseException.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/scoremodels/PIDScoreModel.java b/src/jalview/analysis/scoremodels/PIDScoreModel.java

index f107731..0628ddd 100644 (file)
--- a/src/jalview/analysis/scoremodels/PIDScoreModel.java
+++ b/src/jalview/analysis/scoremodels/PIDScoreModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java b/src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java

index 70e886a..c518b21 100644 (file)
--- a/src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java
+++ b/src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/analysis/scoremodels/SWScoreModel.java b/src/jalview/analysis/scoremodels/SWScoreModel.java

index 93bb56d..f23897c 100644 (file)
--- a/src/jalview/analysis/scoremodels/SWScoreModel.java
+++ b/src/jalview/analysis/scoremodels/SWScoreModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/AlignCalcManagerI.java b/src/jalview/api/AlignCalcManagerI.java

index 199aa7d..7d73b12 100644 (file)
--- a/src/jalview/api/AlignCalcManagerI.java
+++ b/src/jalview/api/AlignCalcManagerI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/AlignCalcWorkerI.java b/src/jalview/api/AlignCalcWorkerI.java

index 48fa750..87a1ee8 100644 (file)
--- a/src/jalview/api/AlignCalcWorkerI.java
+++ b/src/jalview/api/AlignCalcWorkerI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/AlignViewControllerGuiI.java b/src/jalview/api/AlignViewControllerGuiI.java

index b9638e5..37bbf74 100644 (file)
--- a/src/jalview/api/AlignViewControllerGuiI.java
+++ b/src/jalview/api/AlignViewControllerGuiI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/AlignViewControllerI.java b/src/jalview/api/AlignViewControllerI.java

index 35f084f..8a4465b 100644 (file)
--- a/src/jalview/api/AlignViewControllerI.java
+++ b/src/jalview/api/AlignViewControllerI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java

index d8ba30d..f6036de 100644 (file)
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java

index 0955cb4..ef894cd 100644 (file)
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/FeatureRenderer.java b/src/jalview/api/FeatureRenderer.java

index 679cded..8b86a58 100644 (file)
--- a/src/jalview/api/FeatureRenderer.java
+++ b/src/jalview/api/FeatureRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/OOMHandlerI.java b/src/jalview/api/OOMHandlerI.java

index 5c7200c..862aae9 100644 (file)
--- a/src/jalview/api/OOMHandlerI.java
+++ b/src/jalview/api/OOMHandlerI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/RotatableCanvasI.java b/src/jalview/api/RotatableCanvasI.java

index 14b9cc9..f6d6ef9 100644 (file)
--- a/src/jalview/api/RotatableCanvasI.java
+++ b/src/jalview/api/RotatableCanvasI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/SequenceRenderer.java b/src/jalview/api/SequenceRenderer.java

index fbd5e4a..0ec0345 100644 (file)
--- a/src/jalview/api/SequenceRenderer.java
+++ b/src/jalview/api/SequenceRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/SequenceStructureBinding.java b/src/jalview/api/SequenceStructureBinding.java

index 32c5bca..ec80172 100644 (file)
--- a/src/jalview/api/SequenceStructureBinding.java
+++ b/src/jalview/api/SequenceStructureBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/StructureSelectionManagerProvider.java b/src/jalview/api/StructureSelectionManagerProvider.java

index dc37933..9f3268f 100644 (file)
--- a/src/jalview/api/StructureSelectionManagerProvider.java
+++ b/src/jalview/api/StructureSelectionManagerProvider.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/analysis/ScoreModelI.java b/src/jalview/api/analysis/ScoreModelI.java

index ad28faf..7999d61 100644 (file)
--- a/src/jalview/api/analysis/ScoreModelI.java
+++ b/src/jalview/api/analysis/ScoreModelI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/api/structures/JalviewStructureDisplayI.java b/src/jalview/api/structures/JalviewStructureDisplayI.java

index efb60dd..12723e9 100644 (file)
--- a/src/jalview/api/structures/JalviewStructureDisplayI.java
+++ b/src/jalview/api/structures/JalviewStructureDisplayI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/APopupMenu.java b/src/jalview/appletgui/APopupMenu.java

index 98a4a1c..57e2674 100644 (file)
--- a/src/jalview/appletgui/APopupMenu.java
+++ b/src/jalview/appletgui/APopupMenu.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java

index ed64215..4473877 100644 (file)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java

index 7400122..a235a2a 100644 (file)
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AlignmentPanel.java b/src/jalview/appletgui/AlignmentPanel.java

index a90425f..f2fca58 100644 (file)
--- a/src/jalview/appletgui/AlignmentPanel.java
+++ b/src/jalview/appletgui/AlignmentPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AnnotationColourChooser.java b/src/jalview/appletgui/AnnotationColourChooser.java

index c7b7c6c..c1363d7 100644 (file)
--- a/src/jalview/appletgui/AnnotationColourChooser.java
+++ b/src/jalview/appletgui/AnnotationColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AnnotationLabels.java b/src/jalview/appletgui/AnnotationLabels.java

index 3e81664..85a2fbe 100755 (executable)
--- a/src/jalview/appletgui/AnnotationLabels.java
+++ b/src/jalview/appletgui/AnnotationLabels.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java

index 22996f7..e17ce20 100755 (executable)
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AppletJmol.java b/src/jalview/appletgui/AppletJmol.java

index 42fbd70..4b014d1 100644 (file)
--- a/src/jalview/appletgui/AppletJmol.java
+++ b/src/jalview/appletgui/AppletJmol.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/AppletJmolBinding.java b/src/jalview/appletgui/AppletJmolBinding.java

index 650693d..713a348 100644 (file)
--- a/src/jalview/appletgui/AppletJmolBinding.java
+++ b/src/jalview/appletgui/AppletJmolBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/CutAndPasteTransfer.java b/src/jalview/appletgui/CutAndPasteTransfer.java

index 636dd7f..b0e1ad7 100644 (file)
--- a/src/jalview/appletgui/CutAndPasteTransfer.java
+++ b/src/jalview/appletgui/CutAndPasteTransfer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/EditNameDialog.java b/src/jalview/appletgui/EditNameDialog.java

index 4f1ce84..44fe9ee 100644 (file)
--- a/src/jalview/appletgui/EditNameDialog.java
+++ b/src/jalview/appletgui/EditNameDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/EmbmenuFrame.java b/src/jalview/appletgui/EmbmenuFrame.java

index c527308..359f5d8 100644 (file)
--- a/src/jalview/appletgui/EmbmenuFrame.java
+++ b/src/jalview/appletgui/EmbmenuFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/ExtJmol.java b/src/jalview/appletgui/ExtJmol.java

index 6389250..4746932 100644 (file)
--- a/src/jalview/appletgui/ExtJmol.java
+++ b/src/jalview/appletgui/ExtJmol.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/FeatureColourChooser.java b/src/jalview/appletgui/FeatureColourChooser.java

index 32ffdbf..e57a0e9 100644 (file)
--- a/src/jalview/appletgui/FeatureColourChooser.java
+++ b/src/jalview/appletgui/FeatureColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java

index 29c3ac5..6024872 100644 (file)
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java

index cd11a35..39c984d 100755 (executable)
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/Finder.java b/src/jalview/appletgui/Finder.java

index 6ca6ddf..fd73869 100644 (file)
--- a/src/jalview/appletgui/Finder.java
+++ b/src/jalview/appletgui/Finder.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/FontChooser.java b/src/jalview/appletgui/FontChooser.java

index 6bc67b5..9f18e3e 100644 (file)
--- a/src/jalview/appletgui/FontChooser.java
+++ b/src/jalview/appletgui/FontChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/IdCanvas.java b/src/jalview/appletgui/IdCanvas.java

index 25aa315..7ce4778 100755 (executable)
--- a/src/jalview/appletgui/IdCanvas.java
+++ b/src/jalview/appletgui/IdCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/IdPanel.java b/src/jalview/appletgui/IdPanel.java

index 7981634..a13c834 100755 (executable)
--- a/src/jalview/appletgui/IdPanel.java
+++ b/src/jalview/appletgui/IdPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/IdwidthAdjuster.java b/src/jalview/appletgui/IdwidthAdjuster.java

index 87a2a0e..877dc7a 100755 (executable)
--- a/src/jalview/appletgui/IdwidthAdjuster.java
+++ b/src/jalview/appletgui/IdwidthAdjuster.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/JVDialog.java b/src/jalview/appletgui/JVDialog.java

index 4125f1b..4db609f 100644 (file)
--- a/src/jalview/appletgui/JVDialog.java
+++ b/src/jalview/appletgui/JVDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/OverviewPanel.java b/src/jalview/appletgui/OverviewPanel.java

index 2c2c41a..3d5bd1b 100755 (executable)
--- a/src/jalview/appletgui/OverviewPanel.java
+++ b/src/jalview/appletgui/OverviewPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/PCAPanel.java b/src/jalview/appletgui/PCAPanel.java

index 32f02fe..7d8940a 100644 (file)
--- a/src/jalview/appletgui/PCAPanel.java
+++ b/src/jalview/appletgui/PCAPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/PaintRefresher.java b/src/jalview/appletgui/PaintRefresher.java

index 3613247..7620cb9 100755 (executable)
--- a/src/jalview/appletgui/PaintRefresher.java
+++ b/src/jalview/appletgui/PaintRefresher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/PairwiseAlignPanel.java b/src/jalview/appletgui/PairwiseAlignPanel.java

index 5a3b56c..173919e 100644 (file)
--- a/src/jalview/appletgui/PairwiseAlignPanel.java
+++ b/src/jalview/appletgui/PairwiseAlignPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/RedundancyPanel.java b/src/jalview/appletgui/RedundancyPanel.java

index 8e364f0..6182532 100644 (file)
--- a/src/jalview/appletgui/RedundancyPanel.java
+++ b/src/jalview/appletgui/RedundancyPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/RotatableCanvas.java b/src/jalview/appletgui/RotatableCanvas.java

index 5426321..f6a5505 100755 (executable)
--- a/src/jalview/appletgui/RotatableCanvas.java
+++ b/src/jalview/appletgui/RotatableCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/ScalePanel.java b/src/jalview/appletgui/ScalePanel.java

index 60d89aa..6123065 100755 (executable)
--- a/src/jalview/appletgui/ScalePanel.java
+++ b/src/jalview/appletgui/ScalePanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java

index 33caf53..0e2773d 100755 (executable)
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java

index 592fd4f..ba8c6ab 100644 (file)
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/SequenceRenderer.java b/src/jalview/appletgui/SequenceRenderer.java

index 697c0d1..31e2b9f 100755 (executable)
--- a/src/jalview/appletgui/SequenceRenderer.java
+++ b/src/jalview/appletgui/SequenceRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/SliderPanel.java b/src/jalview/appletgui/SliderPanel.java

index 220a7fb..d8f3ec0 100644 (file)
--- a/src/jalview/appletgui/SliderPanel.java
+++ b/src/jalview/appletgui/SliderPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/Tooltip.java b/src/jalview/appletgui/Tooltip.java

index a5f50d9..45a5ef9 100755 (executable)
--- a/src/jalview/appletgui/Tooltip.java
+++ b/src/jalview/appletgui/Tooltip.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/TreeCanvas.java b/src/jalview/appletgui/TreeCanvas.java

index 745520b..7d457d4 100755 (executable)
--- a/src/jalview/appletgui/TreeCanvas.java
+++ b/src/jalview/appletgui/TreeCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/TreePanel.java b/src/jalview/appletgui/TreePanel.java

index b7c766a..90f4bd0 100644 (file)
--- a/src/jalview/appletgui/TreePanel.java
+++ b/src/jalview/appletgui/TreePanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/appletgui/UserDefinedColours.java b/src/jalview/appletgui/UserDefinedColours.java

index afa6419..9ffe169 100644 (file)
--- a/src/jalview/appletgui/UserDefinedColours.java
+++ b/src/jalview/appletgui/UserDefinedColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/bin/Cache.java b/src/jalview/bin/Cache.java

index 3dea84e..3bb2247 100755 (executable)
--- a/src/jalview/bin/Cache.java
+++ b/src/jalview/bin/Cache.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java

index ff1b180..ff5df66 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java

index ae8bc98..dcd3261 100644 (file)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/bin/JalviewLiteURLRetrieve.java b/src/jalview/bin/JalviewLiteURLRetrieve.java

index 65ec11a..a8bb153 100644 (file)
--- a/src/jalview/bin/JalviewLiteURLRetrieve.java
+++ b/src/jalview/bin/JalviewLiteURLRetrieve.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Alignment.java b/src/jalview/binding/Alignment.java

index 354419c..9627b20 100644 (file)
--- a/src/jalview/binding/Alignment.java
+++ b/src/jalview/binding/Alignment.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Annotation.java b/src/jalview/binding/Annotation.java

index 463312f..982a780 100644 (file)
--- a/src/jalview/binding/Annotation.java
+++ b/src/jalview/binding/Annotation.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/AnnotationElement.java b/src/jalview/binding/AnnotationElement.java

index b63f750..4b3000c 100644 (file)
--- a/src/jalview/binding/AnnotationElement.java
+++ b/src/jalview/binding/AnnotationElement.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Colour.java b/src/jalview/binding/Colour.java

index 09e13ae..3888cea 100644 (file)
--- a/src/jalview/binding/Colour.java
+++ b/src/jalview/binding/Colour.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Feature.java b/src/jalview/binding/Feature.java

index 7ee1fb1..6f51336 100644 (file)
--- a/src/jalview/binding/Feature.java
+++ b/src/jalview/binding/Feature.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/FeatureSettings.java b/src/jalview/binding/FeatureSettings.java

index 5cf43eb..93d94e2 100644 (file)
--- a/src/jalview/binding/FeatureSettings.java
+++ b/src/jalview/binding/FeatureSettings.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Features.java b/src/jalview/binding/Features.java

index 3c12a62..9d59223 100644 (file)
--- a/src/jalview/binding/Features.java
+++ b/src/jalview/binding/Features.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/JGroup.java b/src/jalview/binding/JGroup.java

index d2db3e8..241459d 100644 (file)
--- a/src/jalview/binding/JGroup.java
+++ b/src/jalview/binding/JGroup.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/JSeq.java b/src/jalview/binding/JSeq.java

index 7e2b7b1..ecf1eb0 100644 (file)
--- a/src/jalview/binding/JSeq.java
+++ b/src/jalview/binding/JSeq.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/JalviewModel.java b/src/jalview/binding/JalviewModel.java

index e5def42..65f135d 100644 (file)
--- a/src/jalview/binding/JalviewModel.java
+++ b/src/jalview/binding/JalviewModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/JalviewModelSequence.java b/src/jalview/binding/JalviewModelSequence.java

index 97d68de..c5abe72 100644 (file)
--- a/src/jalview/binding/JalviewModelSequence.java
+++ b/src/jalview/binding/JalviewModelSequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/JalviewUserColours.java b/src/jalview/binding/JalviewUserColours.java

index 8b70bcf..68e45e4 100644 (file)
--- a/src/jalview/binding/JalviewUserColours.java
+++ b/src/jalview/binding/JalviewUserColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Pdbentry.java b/src/jalview/binding/Pdbentry.java

index 9b7c1cf..27e1952 100644 (file)
--- a/src/jalview/binding/Pdbentry.java
+++ b/src/jalview/binding/Pdbentry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/PdbentryItem.java b/src/jalview/binding/PdbentryItem.java

index f24d281..5eb9c69 100644 (file)
--- a/src/jalview/binding/PdbentryItem.java
+++ b/src/jalview/binding/PdbentryItem.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Pdbids.java b/src/jalview/binding/Pdbids.java

index 50605f7..9952228 100644 (file)
--- a/src/jalview/binding/Pdbids.java
+++ b/src/jalview/binding/Pdbids.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Property.java b/src/jalview/binding/Property.java

index dada983..c0907e0 100644 (file)
--- a/src/jalview/binding/Property.java
+++ b/src/jalview/binding/Property.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Sequence.java b/src/jalview/binding/Sequence.java

index 46f5a98..d2ad057 100644 (file)
--- a/src/jalview/binding/Sequence.java
+++ b/src/jalview/binding/Sequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/SequenceSet.java b/src/jalview/binding/SequenceSet.java

index 59151c8..eef0b9b 100644 (file)
--- a/src/jalview/binding/SequenceSet.java
+++ b/src/jalview/binding/SequenceSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/SequenceType.java b/src/jalview/binding/SequenceType.java

index 2525782..361dbc1 100644 (file)
--- a/src/jalview/binding/SequenceType.java
+++ b/src/jalview/binding/SequenceType.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Setting.java b/src/jalview/binding/Setting.java

index 16f2ee4..f9063a0 100644 (file)
--- a/src/jalview/binding/Setting.java
+++ b/src/jalview/binding/Setting.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Tree.java b/src/jalview/binding/Tree.java

index ef55876..19d8ae1 100644 (file)
--- a/src/jalview/binding/Tree.java
+++ b/src/jalview/binding/Tree.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/UserColourScheme.java b/src/jalview/binding/UserColourScheme.java

index 0b55c63..9694971 100644 (file)
--- a/src/jalview/binding/UserColourScheme.java
+++ b/src/jalview/binding/UserColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/UserColours.java b/src/jalview/binding/UserColours.java

index 7581cae..e901abf 100644 (file)
--- a/src/jalview/binding/UserColours.java
+++ b/src/jalview/binding/UserColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/VAMSAS.java b/src/jalview/binding/VAMSAS.java

index bd4ea40..0bb696a 100644 (file)
--- a/src/jalview/binding/VAMSAS.java
+++ b/src/jalview/binding/VAMSAS.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/VamsasModel.java b/src/jalview/binding/VamsasModel.java

index 43a8134..dc06b6c 100644 (file)
--- a/src/jalview/binding/VamsasModel.java
+++ b/src/jalview/binding/VamsasModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/binding/Viewport.java b/src/jalview/binding/Viewport.java

index e30a7ec..3a297bb 100644 (file)
--- a/src/jalview/binding/Viewport.java
+++ b/src/jalview/binding/Viewport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/ChangeCaseCommand.java b/src/jalview/commands/ChangeCaseCommand.java

index 47b4d9d..1114ce9 100644 (file)
--- a/src/jalview/commands/ChangeCaseCommand.java
+++ b/src/jalview/commands/ChangeCaseCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/CommandI.java b/src/jalview/commands/CommandI.java

index 8359390..954d51f 100644 (file)
--- a/src/jalview/commands/CommandI.java
+++ b/src/jalview/commands/CommandI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/EditCommand.java b/src/jalview/commands/EditCommand.java

index 82de3b2..aff8595 100644 (file)
--- a/src/jalview/commands/EditCommand.java
+++ b/src/jalview/commands/EditCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/OrderCommand.java b/src/jalview/commands/OrderCommand.java

index b610a54..fbf4a4e 100644 (file)
--- a/src/jalview/commands/OrderCommand.java
+++ b/src/jalview/commands/OrderCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/RemoveGapColCommand.java b/src/jalview/commands/RemoveGapColCommand.java

index ac93d4e..28d419e 100644 (file)
--- a/src/jalview/commands/RemoveGapColCommand.java
+++ b/src/jalview/commands/RemoveGapColCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/RemoveGapsCommand.java b/src/jalview/commands/RemoveGapsCommand.java

index 60d09f7..e49d42b 100644 (file)
--- a/src/jalview/commands/RemoveGapsCommand.java
+++ b/src/jalview/commands/RemoveGapsCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/SlideSequencesCommand.java b/src/jalview/commands/SlideSequencesCommand.java

index 382085c..937e112 100644 (file)
--- a/src/jalview/commands/SlideSequencesCommand.java
+++ b/src/jalview/commands/SlideSequencesCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/commands/TrimRegionCommand.java b/src/jalview/commands/TrimRegionCommand.java

index ebbe827..f3ac9df 100644 (file)
--- a/src/jalview/commands/TrimRegionCommand.java
+++ b/src/jalview/commands/TrimRegionCommand.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/controller/AlignViewController.java b/src/jalview/controller/AlignViewController.java

index dbc3524..0ad4841 100644 (file)
--- a/src/jalview/controller/AlignViewController.java
+++ b/src/jalview/controller/AlignViewController.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/AlignedCodonFrame.java b/src/jalview/datamodel/AlignedCodonFrame.java

index 3fc08d1..fa0f312 100644 (file)
--- a/src/jalview/datamodel/AlignedCodonFrame.java
+++ b/src/jalview/datamodel/AlignedCodonFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java

index 9c5914f..7c4b3c7 100755 (executable)
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java

index e137225..9550e83 100755 (executable)
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java

index c7e30a4..5bfd878 100755 (executable)
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/AlignmentOrder.java b/src/jalview/datamodel/AlignmentOrder.java

index c0f9ab4..7012c76 100755 (executable)
--- a/src/jalview/datamodel/AlignmentOrder.java
+++ b/src/jalview/datamodel/AlignmentOrder.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java

index efb7c4a..9458d62 100644 (file)
--- a/src/jalview/datamodel/AlignmentView.java
+++ b/src/jalview/datamodel/AlignmentView.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/AnnotatedCollectionI.java b/src/jalview/datamodel/AnnotatedCollectionI.java

index 6814b7e..0377d8b 100644 (file)
--- a/src/jalview/datamodel/AnnotatedCollectionI.java
+++ b/src/jalview/datamodel/AnnotatedCollectionI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/Annotation.java b/src/jalview/datamodel/Annotation.java

index 26dc0fa..8e5c490 100755 (executable)
--- a/src/jalview/datamodel/Annotation.java
+++ b/src/jalview/datamodel/Annotation.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/BinaryNode.java b/src/jalview/datamodel/BinaryNode.java

index 18707ef..7012d3b 100755 (executable)
--- a/src/jalview/datamodel/BinaryNode.java
+++ b/src/jalview/datamodel/BinaryNode.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/BinarySequence.java b/src/jalview/datamodel/BinarySequence.java

index 4bf81ea..fc28147 100755 (executable)
--- a/src/jalview/datamodel/BinarySequence.java
+++ b/src/jalview/datamodel/BinarySequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/CigarArray.java b/src/jalview/datamodel/CigarArray.java

index 529891f..1a3d35d 100644 (file)
--- a/src/jalview/datamodel/CigarArray.java
+++ b/src/jalview/datamodel/CigarArray.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/CigarBase.java b/src/jalview/datamodel/CigarBase.java

index d0ead87..7d89244 100644 (file)
--- a/src/jalview/datamodel/CigarBase.java
+++ b/src/jalview/datamodel/CigarBase.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/CigarCigar.java b/src/jalview/datamodel/CigarCigar.java

index 96f3f6f..b6e297e 100644 (file)
--- a/src/jalview/datamodel/CigarCigar.java
+++ b/src/jalview/datamodel/CigarCigar.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/CigarSimple.java b/src/jalview/datamodel/CigarSimple.java

index c961f33..77ddec0 100644 (file)
--- a/src/jalview/datamodel/CigarSimple.java
+++ b/src/jalview/datamodel/CigarSimple.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/ColumnSelection.java b/src/jalview/datamodel/ColumnSelection.java

index f414d13..8f3550d 100644 (file)
--- a/src/jalview/datamodel/ColumnSelection.java
+++ b/src/jalview/datamodel/ColumnSelection.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/DBRefEntry.java b/src/jalview/datamodel/DBRefEntry.java

index 4d4bb05..2151fc4 100755 (executable)
--- a/src/jalview/datamodel/DBRefEntry.java
+++ b/src/jalview/datamodel/DBRefEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/DBRefSource.java b/src/jalview/datamodel/DBRefSource.java

index 1af18b6..4d3d680 100755 (executable)
--- a/src/jalview/datamodel/DBRefSource.java
+++ b/src/jalview/datamodel/DBRefSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/FeatureProperties.java b/src/jalview/datamodel/FeatureProperties.java

index 5c43bc4..72635c6 100644 (file)
--- a/src/jalview/datamodel/FeatureProperties.java
+++ b/src/jalview/datamodel/FeatureProperties.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/GraphLine.java b/src/jalview/datamodel/GraphLine.java

index aab55a1..c2dbcb6 100755 (executable)
--- a/src/jalview/datamodel/GraphLine.java
+++ b/src/jalview/datamodel/GraphLine.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/HiddenSequences.java b/src/jalview/datamodel/HiddenSequences.java

index bfeafd6..1dcf655 100755 (executable)
--- a/src/jalview/datamodel/HiddenSequences.java
+++ b/src/jalview/datamodel/HiddenSequences.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/Mapping.java b/src/jalview/datamodel/Mapping.java

index cb87719..411e4f9 100644 (file)
--- a/src/jalview/datamodel/Mapping.java
+++ b/src/jalview/datamodel/Mapping.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/NodeTransformI.java b/src/jalview/datamodel/NodeTransformI.java

index 6ca1736..ee4f340 100644 (file)
--- a/src/jalview/datamodel/NodeTransformI.java
+++ b/src/jalview/datamodel/NodeTransformI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/PDBEntry.java b/src/jalview/datamodel/PDBEntry.java

index ee2b549..7b30813 100755 (executable)
--- a/src/jalview/datamodel/PDBEntry.java
+++ b/src/jalview/datamodel/PDBEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/Provenance.java b/src/jalview/datamodel/Provenance.java

index a585baf..54c3876 100755 (executable)
--- a/src/jalview/datamodel/Provenance.java
+++ b/src/jalview/datamodel/Provenance.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/ProvenanceEntry.java b/src/jalview/datamodel/ProvenanceEntry.java

index 64e01f6..9da35d9 100755 (executable)
--- a/src/jalview/datamodel/ProvenanceEntry.java
+++ b/src/jalview/datamodel/ProvenanceEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SearchResults.java b/src/jalview/datamodel/SearchResults.java

index 8434e81..8b690e5 100755 (executable)
--- a/src/jalview/datamodel/SearchResults.java
+++ b/src/jalview/datamodel/SearchResults.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SecondaryStructureAnnotation.java b/src/jalview/datamodel/SecondaryStructureAnnotation.java

index 13f31d8..1edc175 100644 (file)
--- a/src/jalview/datamodel/SecondaryStructureAnnotation.java
+++ b/src/jalview/datamodel/SecondaryStructureAnnotation.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SeqCigar.java b/src/jalview/datamodel/SeqCigar.java

index 8441609..77e9111 100644 (file)
--- a/src/jalview/datamodel/SeqCigar.java
+++ b/src/jalview/datamodel/SeqCigar.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java

index 0652fb5..338aa62 100755 (executable)
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequenceCollectionI.java b/src/jalview/datamodel/SequenceCollectionI.java

index 3af441b..9917471 100644 (file)
--- a/src/jalview/datamodel/SequenceCollectionI.java
+++ b/src/jalview/datamodel/SequenceCollectionI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequenceFeature.java b/src/jalview/datamodel/SequenceFeature.java

index 9e1399a..2610ed6 100755 (executable)
--- a/src/jalview/datamodel/SequenceFeature.java
+++ b/src/jalview/datamodel/SequenceFeature.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java

index 752c6d4..0944c34 100755 (executable)
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java

index fc67efd..64a57ba 100755 (executable)
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequenceNode.java b/src/jalview/datamodel/SequenceNode.java

index 2f9563b..edcf9b0 100755 (executable)
--- a/src/jalview/datamodel/SequenceNode.java
+++ b/src/jalview/datamodel/SequenceNode.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/SequencePoint.java b/src/jalview/datamodel/SequencePoint.java

index 5d18727..e25910d 100755 (executable)
--- a/src/jalview/datamodel/SequencePoint.java
+++ b/src/jalview/datamodel/SequencePoint.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/UniprotEntry.java b/src/jalview/datamodel/UniprotEntry.java

index 8fb42f6..da29e42 100755 (executable)
--- a/src/jalview/datamodel/UniprotEntry.java
+++ b/src/jalview/datamodel/UniprotEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/UniprotFile.java b/src/jalview/datamodel/UniprotFile.java

index 94c7f05..ff63dc1 100755 (executable)
--- a/src/jalview/datamodel/UniprotFile.java
+++ b/src/jalview/datamodel/UniprotFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/UniprotProteinName.java b/src/jalview/datamodel/UniprotProteinName.java

index 95eae5c..b7f8cba 100755 (executable)
--- a/src/jalview/datamodel/UniprotProteinName.java
+++ b/src/jalview/datamodel/UniprotProteinName.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/UniprotSequence.java b/src/jalview/datamodel/UniprotSequence.java

index 12f26e1..233c1f6 100755 (executable)
--- a/src/jalview/datamodel/UniprotSequence.java
+++ b/src/jalview/datamodel/UniprotSequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/BasePosition.java b/src/jalview/datamodel/xdb/embl/BasePosition.java

index 01de0ba..a09f087 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/BasePosition.java
+++ b/src/jalview/datamodel/xdb/embl/BasePosition.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblEntry.java b/src/jalview/datamodel/xdb/embl/EmblEntry.java

index 3c88083..6ed8404 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblEntry.java
+++ b/src/jalview/datamodel/xdb/embl/EmblEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblError.java b/src/jalview/datamodel/xdb/embl/EmblError.java

index 30acc36..ac81c25 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblError.java
+++ b/src/jalview/datamodel/xdb/embl/EmblError.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblFeature.java b/src/jalview/datamodel/xdb/embl/EmblFeature.java

index 975471a..803f869 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblFeature.java
+++ b/src/jalview/datamodel/xdb/embl/EmblFeature.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java b/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java

index 41abda1..a3c4b20 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
+++ b/src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java b/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java

index 7df0698..f6708f6 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
+++ b/src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblFile.java b/src/jalview/datamodel/xdb/embl/EmblFile.java

index ec3d050..f69011c 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblFile.java
+++ b/src/jalview/datamodel/xdb/embl/EmblFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/EmblSequence.java b/src/jalview/datamodel/xdb/embl/EmblSequence.java

index 69cb77a..cccca2b 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblSequence.java
+++ b/src/jalview/datamodel/xdb/embl/EmblSequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/datamodel/xdb/embl/Qualifier.java b/src/jalview/datamodel/xdb/embl/Qualifier.java

index 948fb31..1a9aefd 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/Qualifier.java
+++ b/src/jalview/datamodel/xdb/embl/Qualifier.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/jmol/JalviewJmolBinding.java b/src/jalview/ext/jmol/JalviewJmolBinding.java

index 9187912..65c27d9 100644 (file)
--- a/src/jalview/ext/jmol/JalviewJmolBinding.java
+++ b/src/jalview/ext/jmol/JalviewJmolBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/jmol/JmolCommands.java b/src/jalview/ext/jmol/JmolCommands.java

index 5c31a3a..03bfb6d 100644 (file)
--- a/src/jalview/ext/jmol/JmolCommands.java
+++ b/src/jalview/ext/jmol/JmolCommands.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/jmol/PDBFileWithJmol.java b/src/jalview/ext/jmol/PDBFileWithJmol.java

index 92dce36..7c14e32 100644 (file)
--- a/src/jalview/ext/jmol/PDBFileWithJmol.java
+++ b/src/jalview/ext/jmol/PDBFileWithJmol.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/paradise/Annotate3D.java b/src/jalview/ext/paradise/Annotate3D.java

index 3930fc0..66a3564 100644 (file)
--- a/src/jalview/ext/paradise/Annotate3D.java
+++ b/src/jalview/ext/paradise/Annotate3D.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/rbvi/chimera/ChimeraCommands.java b/src/jalview/ext/rbvi/chimera/ChimeraCommands.java

index d3c8c09..b9957a6 100644 (file)
--- a/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
+++ b/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java b/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java

index 82f5e5c..9b9c239 100644 (file)
--- a/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
+++ b/src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/varna/JalviewVarnaBinding.java b/src/jalview/ext/varna/JalviewVarnaBinding.java

index 6a32f30..9edc385 100644 (file)
--- a/src/jalview/ext/varna/JalviewVarnaBinding.java
+++ b/src/jalview/ext/varna/JalviewVarnaBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ext/varna/VarnaCommands.java b/src/jalview/ext/varna/VarnaCommands.java

index 4b5b15b..9d81947 100644 (file)
--- a/src/jalview/ext/varna/VarnaCommands.java
+++ b/src/jalview/ext/varna/VarnaCommands.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java

index 50043e6..216db0e 100644 (file)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java

index d24f6c4..60430ed 100644 (file)
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java

index 2398bda..e1b5abb 100644 (file)
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AnnotationColourChooser.java b/src/jalview/gui/AnnotationColourChooser.java

index b8996b6..1f86d87 100644 (file)
--- a/src/jalview/gui/AnnotationColourChooser.java
+++ b/src/jalview/gui/AnnotationColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AnnotationExporter.java b/src/jalview/gui/AnnotationExporter.java

index 315c3e2..17f43d9 100644 (file)
--- a/src/jalview/gui/AnnotationExporter.java
+++ b/src/jalview/gui/AnnotationExporter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java

index 6e8417f..9c1db3d 100755 (executable)
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java

index 9f56206..e020701 100755 (executable)
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java

index fcb31eb..41a4bf7 100644 (file)
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AppJmolBinding.java b/src/jalview/gui/AppJmolBinding.java

index 7fa300e..2104399 100644 (file)
--- a/src/jalview/gui/AppJmolBinding.java
+++ b/src/jalview/gui/AppJmolBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AppVarna.java b/src/jalview/gui/AppVarna.java

index 4fe9ac2..014e6eb 100644 (file)
--- a/src/jalview/gui/AppVarna.java
+++ b/src/jalview/gui/AppVarna.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AppVarnaBinding.java b/src/jalview/gui/AppVarnaBinding.java

index a738a2c..9ba1d3d 100644 (file)
--- a/src/jalview/gui/AppVarnaBinding.java
+++ b/src/jalview/gui/AppVarnaBinding.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/AssociatePdbFileWithSeq.java b/src/jalview/gui/AssociatePdbFileWithSeq.java

index a854bdf..f13bb35 100644 (file)
--- a/src/jalview/gui/AssociatePdbFileWithSeq.java
+++ b/src/jalview/gui/AssociatePdbFileWithSeq.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/BlogReader.java b/src/jalview/gui/BlogReader.java

index 7d4399d..8dde5d9 100644 (file)
--- a/src/jalview/gui/BlogReader.java
+++ b/src/jalview/gui/BlogReader.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/ChimeraViewFrame.java b/src/jalview/gui/ChimeraViewFrame.java

index 513659f..17b3ead 100644 (file)
--- a/src/jalview/gui/ChimeraViewFrame.java
+++ b/src/jalview/gui/ChimeraViewFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Console.java b/src/jalview/gui/Console.java

index ea7e539..f4fe876 100644 (file)
--- a/src/jalview/gui/Console.java
+++ b/src/jalview/gui/Console.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/CutAndPasteHtmlTransfer.java b/src/jalview/gui/CutAndPasteHtmlTransfer.java

index 7fd091f..d2eccea 100644 (file)
--- a/src/jalview/gui/CutAndPasteHtmlTransfer.java
+++ b/src/jalview/gui/CutAndPasteHtmlTransfer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/CutAndPasteTransfer.java b/src/jalview/gui/CutAndPasteTransfer.java

index 0c22b14..0ebb952 100644 (file)
--- a/src/jalview/gui/CutAndPasteTransfer.java
+++ b/src/jalview/gui/CutAndPasteTransfer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/DasSourceBrowser.java b/src/jalview/gui/DasSourceBrowser.java

index 779e82f..8d006b9 100644 (file)
--- a/src/jalview/gui/DasSourceBrowser.java
+++ b/src/jalview/gui/DasSourceBrowser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java

index b8f629a..7407cba 100644 (file)
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/EPSOptions.java b/src/jalview/gui/EPSOptions.java

index 8906569..d0dcf7c 100644 (file)
--- a/src/jalview/gui/EPSOptions.java
+++ b/src/jalview/gui/EPSOptions.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/EditNameDialog.java b/src/jalview/gui/EditNameDialog.java

index 8db5bb2..142fc24 100644 (file)
--- a/src/jalview/gui/EditNameDialog.java
+++ b/src/jalview/gui/EditNameDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/FeatureColourChooser.java b/src/jalview/gui/FeatureColourChooser.java

index 8ab7c85..1565445 100644 (file)
--- a/src/jalview/gui/FeatureColourChooser.java
+++ b/src/jalview/gui/FeatureColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/FeatureRenderer.java b/src/jalview/gui/FeatureRenderer.java

index d2d9c9c..5a96ff5 100644 (file)
--- a/src/jalview/gui/FeatureRenderer.java
+++ b/src/jalview/gui/FeatureRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java

index 2210148..413b88c 100644 (file)
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Finder.java b/src/jalview/gui/Finder.java

index 8eddc06..cc91ebf 100755 (executable)
--- a/src/jalview/gui/Finder.java
+++ b/src/jalview/gui/Finder.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/FontChooser.java b/src/jalview/gui/FontChooser.java

index b6116d9..f01078c 100755 (executable)
--- a/src/jalview/gui/FontChooser.java
+++ b/src/jalview/gui/FontChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/IProgressIndicator.java b/src/jalview/gui/IProgressIndicator.java

index 33f7cb1..a30d102 100644 (file)
--- a/src/jalview/gui/IProgressIndicator.java
+++ b/src/jalview/gui/IProgressIndicator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/IProgressIndicatorHandler.java b/src/jalview/gui/IProgressIndicatorHandler.java

index 297dc48..4cf9775 100644 (file)
--- a/src/jalview/gui/IProgressIndicatorHandler.java
+++ b/src/jalview/gui/IProgressIndicatorHandler.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/IdCanvas.java b/src/jalview/gui/IdCanvas.java

index 91b23e4..c4c12cb 100755 (executable)
--- a/src/jalview/gui/IdCanvas.java
+++ b/src/jalview/gui/IdCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java

index 6b1109a..deb1167 100755 (executable)
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/IdwidthAdjuster.java b/src/jalview/gui/IdwidthAdjuster.java

index 0c53c58..5d77555 100755 (executable)
--- a/src/jalview/gui/IdwidthAdjuster.java
+++ b/src/jalview/gui/IdwidthAdjuster.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/JDatabaseTree.java b/src/jalview/gui/JDatabaseTree.java

index 030e78a..0f240d6 100644 (file)
--- a/src/jalview/gui/JDatabaseTree.java
+++ b/src/jalview/gui/JDatabaseTree.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java

index cccf34d..f3854fe 100644 (file)
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Jalview2XML_V1.java b/src/jalview/gui/Jalview2XML_V1.java

index 9263cd9..9e4a8ec 100755 (executable)
--- a/src/jalview/gui/Jalview2XML_V1.java
+++ b/src/jalview/gui/Jalview2XML_V1.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/JalviewAppender.java b/src/jalview/gui/JalviewAppender.java

index 481fd34..1f03c4c 100644 (file)
--- a/src/jalview/gui/JalviewAppender.java
+++ b/src/jalview/gui/JalviewAppender.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/JalviewChangeSupport.java b/src/jalview/gui/JalviewChangeSupport.java

index f764277..f2a1f1b 100644 (file)
--- a/src/jalview/gui/JalviewChangeSupport.java
+++ b/src/jalview/gui/JalviewChangeSupport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/JalviewDialog.java b/src/jalview/gui/JalviewDialog.java

index 1aee71e..af31a7b 100644 (file)
--- a/src/jalview/gui/JalviewDialog.java
+++ b/src/jalview/gui/JalviewDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/JvSwingUtils.java b/src/jalview/gui/JvSwingUtils.java

index e433243..f38407b 100644 (file)
--- a/src/jalview/gui/JvSwingUtils.java
+++ b/src/jalview/gui/JvSwingUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/MenuChooser.java b/src/jalview/gui/MenuChooser.java

index d09c5a5..92d0940 100644 (file)
--- a/src/jalview/gui/MenuChooser.java
+++ b/src/jalview/gui/MenuChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/OOMWarning.java b/src/jalview/gui/OOMWarning.java

index a9347eb..2a94235 100644 (file)
--- a/src/jalview/gui/OOMWarning.java
+++ b/src/jalview/gui/OOMWarning.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/OptsAndParamsPage.java b/src/jalview/gui/OptsAndParamsPage.java

index d2f04a1..a9accaf 100644 (file)
--- a/src/jalview/gui/OptsAndParamsPage.java
+++ b/src/jalview/gui/OptsAndParamsPage.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/OptsParametersContainerI.java b/src/jalview/gui/OptsParametersContainerI.java

index ad50b5a..03c5625 100644 (file)
--- a/src/jalview/gui/OptsParametersContainerI.java
+++ b/src/jalview/gui/OptsParametersContainerI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/OverviewPanel.java b/src/jalview/gui/OverviewPanel.java

index e8555f7..997491e 100755 (executable)
--- a/src/jalview/gui/OverviewPanel.java
+++ b/src/jalview/gui/OverviewPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/PCAPanel.java b/src/jalview/gui/PCAPanel.java

index d2d6a98..b0d512e 100644 (file)
--- a/src/jalview/gui/PCAPanel.java
+++ b/src/jalview/gui/PCAPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/PaintRefresher.java b/src/jalview/gui/PaintRefresher.java

index 01dfa3b..623b800 100755 (executable)
--- a/src/jalview/gui/PaintRefresher.java
+++ b/src/jalview/gui/PaintRefresher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java

index bc2c27c..65e1744 100755 (executable)
--- a/src/jalview/gui/PairwiseAlignPanel.java
+++ b/src/jalview/gui/PairwiseAlignPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java

index c2bee83..957ca46 100644 (file)
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java

index bdc83e5..ee03164 100755 (executable)
--- a/src/jalview/gui/Preferences.java
+++ b/src/jalview/gui/Preferences.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/PromptUserConfig.java b/src/jalview/gui/PromptUserConfig.java

index 937d741..bff32fa 100644 (file)
--- a/src/jalview/gui/PromptUserConfig.java
+++ b/src/jalview/gui/PromptUserConfig.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/RedundancyPanel.java b/src/jalview/gui/RedundancyPanel.java

index ab0a0b8..44583ba 100755 (executable)
--- a/src/jalview/gui/RedundancyPanel.java
+++ b/src/jalview/gui/RedundancyPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/RestInputParamEditDialog.java b/src/jalview/gui/RestInputParamEditDialog.java

index 508c55c..6e3d9c1 100644 (file)
--- a/src/jalview/gui/RestInputParamEditDialog.java
+++ b/src/jalview/gui/RestInputParamEditDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/RestServiceEditorPane.java b/src/jalview/gui/RestServiceEditorPane.java

index 191e420..4dafc75 100644 (file)
--- a/src/jalview/gui/RestServiceEditorPane.java
+++ b/src/jalview/gui/RestServiceEditorPane.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/RotatableCanvas.java b/src/jalview/gui/RotatableCanvas.java

index 1ff78b4..573f59e 100755 (executable)
--- a/src/jalview/gui/RotatableCanvas.java
+++ b/src/jalview/gui/RotatableCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SVGOptions.java b/src/jalview/gui/SVGOptions.java

index b5e194b..4f34e3b 100644 (file)
--- a/src/jalview/gui/SVGOptions.java
+++ b/src/jalview/gui/SVGOptions.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/ScalePanel.java b/src/jalview/gui/ScalePanel.java

index f2c5154..97a9c62 100755 (executable)
--- a/src/jalview/gui/ScalePanel.java
+++ b/src/jalview/gui/ScalePanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/ScriptWindow.java b/src/jalview/gui/ScriptWindow.java

index d935eb7..f329b00 100644 (file)
--- a/src/jalview/gui/ScriptWindow.java
+++ b/src/jalview/gui/ScriptWindow.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java

index d73ee70..d5dd927 100755 (executable)
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java

index c10a4a9..14274e2 100644 (file)
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java

index 35bc29a..71348ef 100755 (executable)
--- a/src/jalview/gui/SequenceFetcher.java
+++ b/src/jalview/gui/SequenceFetcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java

index bcbebbd..7e39a8c 100755 (executable)
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SliderPanel.java b/src/jalview/gui/SliderPanel.java

index 81b3bd3..6a8c63b 100755 (executable)
--- a/src/jalview/gui/SliderPanel.java
+++ b/src/jalview/gui/SliderPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/SplashScreen.java b/src/jalview/gui/SplashScreen.java

index 14e1a0e..b24d6f8 100755 (executable)
--- a/src/jalview/gui/SplashScreen.java
+++ b/src/jalview/gui/SplashScreen.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/StructureViewer.java b/src/jalview/gui/StructureViewer.java

index 22f12ea..6b6fde4 100644 (file)
--- a/src/jalview/gui/StructureViewer.java
+++ b/src/jalview/gui/StructureViewer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/TextColourChooser.java b/src/jalview/gui/TextColourChooser.java

index 4315e0b..7cc5c63 100644 (file)
--- a/src/jalview/gui/TextColourChooser.java
+++ b/src/jalview/gui/TextColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java

index c5650f5..9660f82 100755 (executable)
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java

index ee0bfaf..e67365e 100755 (executable)
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java

index 37824fe..f33445b 100755 (executable)
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/UserQuestionnaireCheck.java b/src/jalview/gui/UserQuestionnaireCheck.java

index 315dd66..46f5b00 100644 (file)
--- a/src/jalview/gui/UserQuestionnaireCheck.java
+++ b/src/jalview/gui/UserQuestionnaireCheck.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/VamsasApplication.java b/src/jalview/gui/VamsasApplication.java

index 77a7693..6daaf68 100644 (file)
--- a/src/jalview/gui/VamsasApplication.java
+++ b/src/jalview/gui/VamsasApplication.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/ViewSelectionMenu.java b/src/jalview/gui/ViewSelectionMenu.java

index 164f975..bfef2be 100644 (file)
--- a/src/jalview/gui/ViewSelectionMenu.java
+++ b/src/jalview/gui/ViewSelectionMenu.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/WebserviceInfo.java b/src/jalview/gui/WebserviceInfo.java

index cd93277..79cc469 100644 (file)
--- a/src/jalview/gui/WebserviceInfo.java
+++ b/src/jalview/gui/WebserviceInfo.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/WsJobParameters.java b/src/jalview/gui/WsJobParameters.java

index 4a74c9c..fd33a53 100644 (file)
--- a/src/jalview/gui/WsJobParameters.java
+++ b/src/jalview/gui/WsJobParameters.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/WsParamSetManager.java b/src/jalview/gui/WsParamSetManager.java

index 2db19a2..8f7757d 100644 (file)
--- a/src/jalview/gui/WsParamSetManager.java
+++ b/src/jalview/gui/WsParamSetManager.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/gui/WsPreferences.java b/src/jalview/gui/WsPreferences.java

index 527750c..d92cddb 100644 (file)
--- a/src/jalview/gui/WsPreferences.java
+++ b/src/jalview/gui/WsPreferences.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/AMSAFile.java b/src/jalview/io/AMSAFile.java

index b51daa5..db1b7cb 100644 (file)
--- a/src/jalview/io/AMSAFile.java
+++ b/src/jalview/io/AMSAFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java

index af835ca..661ebae 100755 (executable)
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/AlignmentProperties.java b/src/jalview/io/AlignmentProperties.java

index 9f33fb4..88e3814 100644 (file)
--- a/src/jalview/io/AlignmentProperties.java
+++ b/src/jalview/io/AlignmentProperties.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java

index 7736332..f66b3da 100755 (executable)
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java

index d3b19fa..81783fc 100755 (executable)
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   *
   * This file is part of Jalview.
diff --git a/src/jalview/io/BLCFile.java b/src/jalview/io/BLCFile.java

index 66f9d8e..6138057 100755 (executable)
--- a/src/jalview/io/BLCFile.java
+++ b/src/jalview/io/BLCFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/ClansFile.java b/src/jalview/io/ClansFile.java

index 7c8fb9b..e6f7cf0 100644 (file)
--- a/src/jalview/io/ClansFile.java
+++ b/src/jalview/io/ClansFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/ClustalFile.java b/src/jalview/io/ClustalFile.java

index 34f25dd..3102f9c 100755 (executable)
--- a/src/jalview/io/ClustalFile.java
+++ b/src/jalview/io/ClustalFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/DBRefFile.java b/src/jalview/io/DBRefFile.java

index 39c3143..7619e96 100644 (file)
--- a/src/jalview/io/DBRefFile.java
+++ b/src/jalview/io/DBRefFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/FastaFile.java b/src/jalview/io/FastaFile.java

index 6e5de81..9f3793c 100755 (executable)
--- a/src/jalview/io/FastaFile.java
+++ b/src/jalview/io/FastaFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java

index 87b829f..11135b7 100755 (executable)
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java

index 82b94c3..f22d93a 100755 (executable)
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/FileParse.java b/src/jalview/io/FileParse.java

index 8e9a49c..b6f94fd 100755 (executable)
--- a/src/jalview/io/FileParse.java
+++ b/src/jalview/io/FileParse.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java

index 8ca0c35..ccabbb3 100755 (executable)
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/HTMLOutput.java b/src/jalview/io/HTMLOutput.java

index 50b07e4..237b6a9 100755 (executable)
--- a/src/jalview/io/HTMLOutput.java
+++ b/src/jalview/io/HTMLOutput.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java

index 9c7478b..beb1385 100755 (executable)
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   *
   * This file is part of Jalview.
diff --git a/src/jalview/io/InputStreamParser.java b/src/jalview/io/InputStreamParser.java

index b5b5671..c609e78 100644 (file)
--- a/src/jalview/io/InputStreamParser.java
+++ b/src/jalview/io/InputStreamParser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/JPredFile.java b/src/jalview/io/JPredFile.java

index ca74f2c..abd44c0 100755 (executable)
--- a/src/jalview/io/JPredFile.java
+++ b/src/jalview/io/JPredFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/JalviewFileChooser.java b/src/jalview/io/JalviewFileChooser.java

index df8decf..d14fa50 100755 (executable)
--- a/src/jalview/io/JalviewFileChooser.java
+++ b/src/jalview/io/JalviewFileChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   *
   * This file is part of Jalview.
diff --git a/src/jalview/io/JalviewFileFilter.java b/src/jalview/io/JalviewFileFilter.java

index 2a8f078..0d2d4bf 100755 (executable)
--- a/src/jalview/io/JalviewFileFilter.java
+++ b/src/jalview/io/JalviewFileFilter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/JalviewFileView.java b/src/jalview/io/JalviewFileView.java

index 65581c3..93fc04a 100755 (executable)
--- a/src/jalview/io/JalviewFileView.java
+++ b/src/jalview/io/JalviewFileView.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/JnetAnnotationMaker.java b/src/jalview/io/JnetAnnotationMaker.java

index 5c95a3f..c2e3b4a 100755 (executable)
--- a/src/jalview/io/JnetAnnotationMaker.java
+++ b/src/jalview/io/JnetAnnotationMaker.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/MSFfile.java b/src/jalview/io/MSFfile.java

index 05765e3..febf6ff 100755 (executable)
--- a/src/jalview/io/MSFfile.java
+++ b/src/jalview/io/MSFfile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/MatrixFile.java b/src/jalview/io/MatrixFile.java

index 09077d2..f028d6a 100644 (file)
--- a/src/jalview/io/MatrixFile.java
+++ b/src/jalview/io/MatrixFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/ModellerDescription.java b/src/jalview/io/ModellerDescription.java

index b0371f9..cc9b966 100755 (executable)
--- a/src/jalview/io/ModellerDescription.java
+++ b/src/jalview/io/ModellerDescription.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/NewickFile.java b/src/jalview/io/NewickFile.java

index f2a29ea..ab76ab9 100755 (executable)
--- a/src/jalview/io/NewickFile.java
+++ b/src/jalview/io/NewickFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/PIRFile.java b/src/jalview/io/PIRFile.java

index 28f553a..dfa612e 100755 (executable)
--- a/src/jalview/io/PIRFile.java
+++ b/src/jalview/io/PIRFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/PfamFile.java b/src/jalview/io/PfamFile.java

index 7d4baa2..85588a6 100755 (executable)
--- a/src/jalview/io/PfamFile.java
+++ b/src/jalview/io/PfamFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/PileUpfile.java b/src/jalview/io/PileUpfile.java

index 2a902b4..64905f0 100755 (executable)
--- a/src/jalview/io/PileUpfile.java
+++ b/src/jalview/io/PileUpfile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/RnamlFile.java b/src/jalview/io/RnamlFile.java

index c075fda..d743c7d 100644 (file)
--- a/src/jalview/io/RnamlFile.java
+++ b/src/jalview/io/RnamlFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/SequenceAnnotationReport.java b/src/jalview/io/SequenceAnnotationReport.java

index 6fba9c6..62a793e 100644 (file)
--- a/src/jalview/io/SequenceAnnotationReport.java
+++ b/src/jalview/io/SequenceAnnotationReport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/SimpleBlastFile.java b/src/jalview/io/SimpleBlastFile.java

index d0bf651..35a498c 100644 (file)
--- a/src/jalview/io/SimpleBlastFile.java
+++ b/src/jalview/io/SimpleBlastFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java

index 3b9fb00..76b83ba 100644 (file)
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/TCoffeeScoreFile.java b/src/jalview/io/TCoffeeScoreFile.java

index d437bd8..fce7fc5 100644 (file)
--- a/src/jalview/io/TCoffeeScoreFile.java
+++ b/src/jalview/io/TCoffeeScoreFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/VamsasAppDatastore.java b/src/jalview/io/VamsasAppDatastore.java

index 6293a1b..2ec7fde 100644 (file)
--- a/src/jalview/io/VamsasAppDatastore.java
+++ b/src/jalview/io/VamsasAppDatastore.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/WSWUBlastClient.java b/src/jalview/io/WSWUBlastClient.java

index 4f0d802..41b8f94 100755 (executable)
--- a/src/jalview/io/WSWUBlastClient.java
+++ b/src/jalview/io/WSWUBlastClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/packed/DataProvider.java b/src/jalview/io/packed/DataProvider.java

index 95b434f..306fbc1 100644 (file)
--- a/src/jalview/io/packed/DataProvider.java
+++ b/src/jalview/io/packed/DataProvider.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/packed/JalviewDataset.java b/src/jalview/io/packed/JalviewDataset.java

index 69cefce..676777b 100644 (file)
--- a/src/jalview/io/packed/JalviewDataset.java
+++ b/src/jalview/io/packed/JalviewDataset.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/packed/ParsePackedSet.java b/src/jalview/io/packed/ParsePackedSet.java

index df1acf1..ef221ba 100644 (file)
--- a/src/jalview/io/packed/ParsePackedSet.java
+++ b/src/jalview/io/packed/ParsePackedSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/packed/SimpleDataProvider.java b/src/jalview/io/packed/SimpleDataProvider.java

index 1a1a24f..584ffb9 100644 (file)
--- a/src/jalview/io/packed/SimpleDataProvider.java
+++ b/src/jalview/io/packed/SimpleDataProvider.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Datasetsequence.java b/src/jalview/io/vamsas/Datasetsequence.java

index 6b449ee..4c061fa 100644 (file)
--- a/src/jalview/io/vamsas/Datasetsequence.java
+++ b/src/jalview/io/vamsas/Datasetsequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/DatastoreItem.java b/src/jalview/io/vamsas/DatastoreItem.java

index 2a070e8..f595ff4 100644 (file)
--- a/src/jalview/io/vamsas/DatastoreItem.java
+++ b/src/jalview/io/vamsas/DatastoreItem.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/DatastoreRegistry.java b/src/jalview/io/vamsas/DatastoreRegistry.java

index 732af96..436a811 100644 (file)
--- a/src/jalview/io/vamsas/DatastoreRegistry.java
+++ b/src/jalview/io/vamsas/DatastoreRegistry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Dbref.java b/src/jalview/io/vamsas/Dbref.java

index 66560b1..0754964 100644 (file)
--- a/src/jalview/io/vamsas/Dbref.java
+++ b/src/jalview/io/vamsas/Dbref.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/LocalDocSyncObject.java b/src/jalview/io/vamsas/LocalDocSyncObject.java

index 030793d..69d162f 100644 (file)
--- a/src/jalview/io/vamsas/LocalDocSyncObject.java
+++ b/src/jalview/io/vamsas/LocalDocSyncObject.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Rangetype.java b/src/jalview/io/vamsas/Rangetype.java

index 3cc977f..a83a34f 100644 (file)
--- a/src/jalview/io/vamsas/Rangetype.java
+++ b/src/jalview/io/vamsas/Rangetype.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Sequencefeature.java b/src/jalview/io/vamsas/Sequencefeature.java

index 4eef152..8c3ab99 100644 (file)
--- a/src/jalview/io/vamsas/Sequencefeature.java
+++ b/src/jalview/io/vamsas/Sequencefeature.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Sequencemapping.java b/src/jalview/io/vamsas/Sequencemapping.java

index 3878a0a..550d0ff 100644 (file)
--- a/src/jalview/io/vamsas/Sequencemapping.java
+++ b/src/jalview/io/vamsas/Sequencemapping.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/io/vamsas/Tree.java b/src/jalview/io/vamsas/Tree.java

index dbfaf37..e56fa3f 100644 (file)
--- a/src/jalview/io/vamsas/Tree.java
+++ b/src/jalview/io/vamsas/Tree.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/JSFunctionExec.java b/src/jalview/javascript/JSFunctionExec.java

index 788b28f..5081176 100644 (file)
--- a/src/jalview/javascript/JSFunctionExec.java
+++ b/src/jalview/javascript/JSFunctionExec.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/JalviewLiteJsApi.java b/src/jalview/javascript/JalviewLiteJsApi.java

index e200280..af1b975 100644 (file)
--- a/src/jalview/javascript/JalviewLiteJsApi.java
+++ b/src/jalview/javascript/JalviewLiteJsApi.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/JsCallBack.java b/src/jalview/javascript/JsCallBack.java

index 16c01a6..3f1c446 100644 (file)
--- a/src/jalview/javascript/JsCallBack.java
+++ b/src/jalview/javascript/JsCallBack.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/JsSelectionSender.java b/src/jalview/javascript/JsSelectionSender.java

index d9e1b98..6302ef2 100644 (file)
--- a/src/jalview/javascript/JsSelectionSender.java
+++ b/src/jalview/javascript/JsSelectionSender.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/MouseOverListener.java b/src/jalview/javascript/MouseOverListener.java

index 19f7b11..2f91816 100644 (file)
--- a/src/jalview/javascript/MouseOverListener.java
+++ b/src/jalview/javascript/MouseOverListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/javascript/MouseOverStructureListener.java b/src/jalview/javascript/MouseOverStructureListener.java

index 465a672..4164f20 100644 (file)
--- a/src/jalview/javascript/MouseOverStructureListener.java
+++ b/src/jalview/javascript/MouseOverStructureListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java

index 387bb7f..e546608 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GAlignmentPanel.java b/src/jalview/jbgui/GAlignmentPanel.java

index 370d016..c74ef68 100755 (executable)
--- a/src/jalview/jbgui/GAlignmentPanel.java
+++ b/src/jalview/jbgui/GAlignmentPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java b/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java

index bc05d8c..2068529 100644 (file)
--- a/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
+++ b/src/jalview/jbgui/GCutAndPasteHtmlTransfer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GCutAndPasteTransfer.java b/src/jalview/jbgui/GCutAndPasteTransfer.java

index 0a48d7e..0c2b05c 100755 (executable)
--- a/src/jalview/jbgui/GCutAndPasteTransfer.java
+++ b/src/jalview/jbgui/GCutAndPasteTransfer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GDasSourceBrowser.java b/src/jalview/jbgui/GDasSourceBrowser.java

index 185ce13..3fd42d4 100755 (executable)
--- a/src/jalview/jbgui/GDasSourceBrowser.java
+++ b/src/jalview/jbgui/GDasSourceBrowser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GDesktop.java b/src/jalview/jbgui/GDesktop.java

index 97ec9fe..74c0a2e 100755 (executable)
--- a/src/jalview/jbgui/GDesktop.java
+++ b/src/jalview/jbgui/GDesktop.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GFinder.java b/src/jalview/jbgui/GFinder.java

index 7705259..c529728 100755 (executable)
--- a/src/jalview/jbgui/GFinder.java
+++ b/src/jalview/jbgui/GFinder.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GFontChooser.java b/src/jalview/jbgui/GFontChooser.java

index 17ed4ad..dd7d7e2 100755 (executable)
--- a/src/jalview/jbgui/GFontChooser.java
+++ b/src/jalview/jbgui/GFontChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GPCAPanel.java b/src/jalview/jbgui/GPCAPanel.java

index ed2dc7d..d63fd54 100755 (executable)
--- a/src/jalview/jbgui/GPCAPanel.java
+++ b/src/jalview/jbgui/GPCAPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GPairwiseAlignPanel.java b/src/jalview/jbgui/GPairwiseAlignPanel.java

index aa88a92..04aeb5d 100755 (executable)
--- a/src/jalview/jbgui/GPairwiseAlignPanel.java
+++ b/src/jalview/jbgui/GPairwiseAlignPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java

index 610f32e..26bd0cc 100755 (executable)
--- a/src/jalview/jbgui/GPreferences.java
+++ b/src/jalview/jbgui/GPreferences.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GRestInputParamEditDialog.java b/src/jalview/jbgui/GRestInputParamEditDialog.java

index f91d8b2..89be170 100644 (file)
--- a/src/jalview/jbgui/GRestInputParamEditDialog.java
+++ b/src/jalview/jbgui/GRestInputParamEditDialog.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GRestServiceEditorPane.java b/src/jalview/jbgui/GRestServiceEditorPane.java

index 7a04248..ba8032a 100644 (file)
--- a/src/jalview/jbgui/GRestServiceEditorPane.java
+++ b/src/jalview/jbgui/GRestServiceEditorPane.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GRnaStructureViewer.java b/src/jalview/jbgui/GRnaStructureViewer.java

index 90fd530..44a2998 100644 (file)
--- a/src/jalview/jbgui/GRnaStructureViewer.java
+++ b/src/jalview/jbgui/GRnaStructureViewer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GSequenceLink.java b/src/jalview/jbgui/GSequenceLink.java

index 3e6f91a..0616c79 100755 (executable)
--- a/src/jalview/jbgui/GSequenceLink.java
+++ b/src/jalview/jbgui/GSequenceLink.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GSliderPanel.java b/src/jalview/jbgui/GSliderPanel.java

index b11fb7f..e829f43 100755 (executable)
--- a/src/jalview/jbgui/GSliderPanel.java
+++ b/src/jalview/jbgui/GSliderPanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GStructureViewer.java b/src/jalview/jbgui/GStructureViewer.java

index 58b2eb1..904d75c 100644 (file)
--- a/src/jalview/jbgui/GStructureViewer.java
+++ b/src/jalview/jbgui/GStructureViewer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GTreePanel.java b/src/jalview/jbgui/GTreePanel.java

index b492c21..482060a 100755 (executable)
--- a/src/jalview/jbgui/GTreePanel.java
+++ b/src/jalview/jbgui/GTreePanel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GUserDefinedColours.java b/src/jalview/jbgui/GUserDefinedColours.java

index 7a485fd..061b814 100755 (executable)
--- a/src/jalview/jbgui/GUserDefinedColours.java
+++ b/src/jalview/jbgui/GUserDefinedColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GWebserviceInfo.java b/src/jalview/jbgui/GWebserviceInfo.java

index 910768e..e012ca5 100755 (executable)
--- a/src/jalview/jbgui/GWebserviceInfo.java
+++ b/src/jalview/jbgui/GWebserviceInfo.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/jbgui/GWsPreferences.java b/src/jalview/jbgui/GWsPreferences.java

index ff171c9..30b4883 100644 (file)
--- a/src/jalview/jbgui/GWsPreferences.java
+++ b/src/jalview/jbgui/GWsPreferences.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/math/Matrix.java b/src/jalview/math/Matrix.java

index acd83a8..a549520 100755 (executable)
--- a/src/jalview/math/Matrix.java
+++ b/src/jalview/math/Matrix.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/math/RotatableMatrix.java b/src/jalview/math/RotatableMatrix.java

index 179c790..4aa9f66 100755 (executable)
--- a/src/jalview/math/RotatableMatrix.java
+++ b/src/jalview/math/RotatableMatrix.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/renderer/AnnotationRenderer.java b/src/jalview/renderer/AnnotationRenderer.java

index d5b2f49..b48d83f 100644 (file)
--- a/src/jalview/renderer/AnnotationRenderer.java
+++ b/src/jalview/renderer/AnnotationRenderer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/renderer/AwtRenderPanelI.java b/src/jalview/renderer/AwtRenderPanelI.java

index ab601da..99d670c 100644 (file)
--- a/src/jalview/renderer/AwtRenderPanelI.java
+++ b/src/jalview/renderer/AwtRenderPanelI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/AlcodMap.java b/src/jalview/schemabinding/version2/AlcodMap.java

index a28c76a..e16eef6 100644 (file)
--- a/src/jalview/schemabinding/version2/AlcodMap.java
+++ b/src/jalview/schemabinding/version2/AlcodMap.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Alcodon.java b/src/jalview/schemabinding/version2/Alcodon.java

index ea0d410..c953653 100644 (file)
--- a/src/jalview/schemabinding/version2/Alcodon.java
+++ b/src/jalview/schemabinding/version2/Alcodon.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/AlcodonFrame.java b/src/jalview/schemabinding/version2/AlcodonFrame.java

index c7d2f17..a931087 100644 (file)
--- a/src/jalview/schemabinding/version2/AlcodonFrame.java
+++ b/src/jalview/schemabinding/version2/AlcodonFrame.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/AnnotationColourScheme.java b/src/jalview/schemabinding/version2/AnnotationColourScheme.java

index 6167df8..6fec1bb 100644 (file)
--- a/src/jalview/schemabinding/version2/AnnotationColourScheme.java
+++ b/src/jalview/schemabinding/version2/AnnotationColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/AnnotationColours.java b/src/jalview/schemabinding/version2/AnnotationColours.java

index 586c695..455d96d 100644 (file)
--- a/src/jalview/schemabinding/version2/AnnotationColours.java
+++ b/src/jalview/schemabinding/version2/AnnotationColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/AnnotationElement.java b/src/jalview/schemabinding/version2/AnnotationElement.java

index 5d85349..4487094 100644 (file)
--- a/src/jalview/schemabinding/version2/AnnotationElement.java
+++ b/src/jalview/schemabinding/version2/AnnotationElement.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/CalcIdParam.java b/src/jalview/schemabinding/version2/CalcIdParam.java

index 079e83f..c88f117 100644 (file)
--- a/src/jalview/schemabinding/version2/CalcIdParam.java
+++ b/src/jalview/schemabinding/version2/CalcIdParam.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Colour.java b/src/jalview/schemabinding/version2/Colour.java

index a0d242b..0a461e8 100644 (file)
--- a/src/jalview/schemabinding/version2/Colour.java
+++ b/src/jalview/schemabinding/version2/Colour.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/DBRef.java b/src/jalview/schemabinding/version2/DBRef.java

index 4443606..24f0d13 100644 (file)
--- a/src/jalview/schemabinding/version2/DBRef.java
+++ b/src/jalview/schemabinding/version2/DBRef.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Feature.java b/src/jalview/schemabinding/version2/Feature.java

index bbc5f67..d5c8e84 100644 (file)
--- a/src/jalview/schemabinding/version2/Feature.java
+++ b/src/jalview/schemabinding/version2/Feature.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/FeatureSettings.java b/src/jalview/schemabinding/version2/FeatureSettings.java

index 14d9844..be6c20a 100644 (file)
--- a/src/jalview/schemabinding/version2/FeatureSettings.java
+++ b/src/jalview/schemabinding/version2/FeatureSettings.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Features.java b/src/jalview/schemabinding/version2/Features.java

index e482625..1fd03f1 100644 (file)
--- a/src/jalview/schemabinding/version2/Features.java
+++ b/src/jalview/schemabinding/version2/Features.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Group.java b/src/jalview/schemabinding/version2/Group.java

index 713acae..948fd2b 100644 (file)
--- a/src/jalview/schemabinding/version2/Group.java
+++ b/src/jalview/schemabinding/version2/Group.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/HiddenColumns.java b/src/jalview/schemabinding/version2/HiddenColumns.java

index 68ce92c..c93914c 100644 (file)
--- a/src/jalview/schemabinding/version2/HiddenColumns.java
+++ b/src/jalview/schemabinding/version2/HiddenColumns.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/JGroup.java b/src/jalview/schemabinding/version2/JGroup.java

index 3a8dab2..523115f 100644 (file)
--- a/src/jalview/schemabinding/version2/JGroup.java
+++ b/src/jalview/schemabinding/version2/JGroup.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/JSeq.java b/src/jalview/schemabinding/version2/JSeq.java

index 31a128e..cb2f51d 100644 (file)
--- a/src/jalview/schemabinding/version2/JSeq.java
+++ b/src/jalview/schemabinding/version2/JSeq.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/JalviewModel.java b/src/jalview/schemabinding/version2/JalviewModel.java

index b4c35c1..1e2c474 100644 (file)
--- a/src/jalview/schemabinding/version2/JalviewModel.java
+++ b/src/jalview/schemabinding/version2/JalviewModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/JalviewModelSequence.java b/src/jalview/schemabinding/version2/JalviewModelSequence.java

index 790a1ca..9328e15 100644 (file)
--- a/src/jalview/schemabinding/version2/JalviewModelSequence.java
+++ b/src/jalview/schemabinding/version2/JalviewModelSequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/JalviewUserColours.java b/src/jalview/schemabinding/version2/JalviewUserColours.java

index e6ced25..fd23c5b 100644 (file)
--- a/src/jalview/schemabinding/version2/JalviewUserColours.java
+++ b/src/jalview/schemabinding/version2/JalviewUserColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/MapListFrom.java b/src/jalview/schemabinding/version2/MapListFrom.java

index d9986c7..b0ee7a5 100644 (file)
--- a/src/jalview/schemabinding/version2/MapListFrom.java
+++ b/src/jalview/schemabinding/version2/MapListFrom.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/MapListTo.java b/src/jalview/schemabinding/version2/MapListTo.java

index a66d8d4..d1c5af8 100644 (file)
--- a/src/jalview/schemabinding/version2/MapListTo.java
+++ b/src/jalview/schemabinding/version2/MapListTo.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/MapListType.java b/src/jalview/schemabinding/version2/MapListType.java

index 32e8ce2..ea0e5c9 100644 (file)
--- a/src/jalview/schemabinding/version2/MapListType.java
+++ b/src/jalview/schemabinding/version2/MapListType.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Mapping.java b/src/jalview/schemabinding/version2/Mapping.java

index 255fc3e..02d9756 100644 (file)
--- a/src/jalview/schemabinding/version2/Mapping.java
+++ b/src/jalview/schemabinding/version2/Mapping.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/MappingChoice.java b/src/jalview/schemabinding/version2/MappingChoice.java

index ee7ae0f..a93a14a 100644 (file)
--- a/src/jalview/schemabinding/version2/MappingChoice.java
+++ b/src/jalview/schemabinding/version2/MappingChoice.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/OtherData.java b/src/jalview/schemabinding/version2/OtherData.java

index 24b6b11..1f8973d 100644 (file)
--- a/src/jalview/schemabinding/version2/OtherData.java
+++ b/src/jalview/schemabinding/version2/OtherData.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Pdbentry.java b/src/jalview/schemabinding/version2/Pdbentry.java

index a558e12..b76a8e6 100644 (file)
--- a/src/jalview/schemabinding/version2/Pdbentry.java
+++ b/src/jalview/schemabinding/version2/Pdbentry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/PdbentryItem.java b/src/jalview/schemabinding/version2/PdbentryItem.java

index b1bbf11..4b50a7e 100644 (file)
--- a/src/jalview/schemabinding/version2/PdbentryItem.java
+++ b/src/jalview/schemabinding/version2/PdbentryItem.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Pdbids.java b/src/jalview/schemabinding/version2/Pdbids.java

index bf700f9..d2fbb35 100644 (file)
--- a/src/jalview/schemabinding/version2/Pdbids.java
+++ b/src/jalview/schemabinding/version2/Pdbids.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Sequence.java b/src/jalview/schemabinding/version2/Sequence.java

index 54f2e30..faea008 100644 (file)
--- a/src/jalview/schemabinding/version2/Sequence.java
+++ b/src/jalview/schemabinding/version2/Sequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/SequenceSet.java b/src/jalview/schemabinding/version2/SequenceSet.java

index d058ad5..347df4a 100644 (file)
--- a/src/jalview/schemabinding/version2/SequenceSet.java
+++ b/src/jalview/schemabinding/version2/SequenceSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/SequenceSetProperties.java b/src/jalview/schemabinding/version2/SequenceSetProperties.java

index 4924a5c..3a957a0 100644 (file)
--- a/src/jalview/schemabinding/version2/SequenceSetProperties.java
+++ b/src/jalview/schemabinding/version2/SequenceSetProperties.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/SequenceType.java b/src/jalview/schemabinding/version2/SequenceType.java

index 209c03a..a7b6a93 100644 (file)
--- a/src/jalview/schemabinding/version2/SequenceType.java
+++ b/src/jalview/schemabinding/version2/SequenceType.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Setting.java b/src/jalview/schemabinding/version2/Setting.java

index d20ec15..bf942b9 100644 (file)
--- a/src/jalview/schemabinding/version2/Setting.java
+++ b/src/jalview/schemabinding/version2/Setting.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/StructureState.java b/src/jalview/schemabinding/version2/StructureState.java

index 92fb2f7..25e7fdf 100644 (file)
--- a/src/jalview/schemabinding/version2/StructureState.java
+++ b/src/jalview/schemabinding/version2/StructureState.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/ThresholdLine.java b/src/jalview/schemabinding/version2/ThresholdLine.java

index f5dab4d..16087c6 100644 (file)
--- a/src/jalview/schemabinding/version2/ThresholdLine.java
+++ b/src/jalview/schemabinding/version2/ThresholdLine.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Tree.java b/src/jalview/schemabinding/version2/Tree.java

index 175c852..aafef57 100644 (file)
--- a/src/jalview/schemabinding/version2/Tree.java
+++ b/src/jalview/schemabinding/version2/Tree.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/UserColourScheme.java b/src/jalview/schemabinding/version2/UserColourScheme.java

index 55c0024..e1c1118 100644 (file)
--- a/src/jalview/schemabinding/version2/UserColourScheme.java
+++ b/src/jalview/schemabinding/version2/UserColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/UserColours.java b/src/jalview/schemabinding/version2/UserColours.java

index 76f0ad9..a0e34f5 100644 (file)
--- a/src/jalview/schemabinding/version2/UserColours.java
+++ b/src/jalview/schemabinding/version2/UserColours.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/VAMSAS.java b/src/jalview/schemabinding/version2/VAMSAS.java

index 7f0c216..2f60489 100644 (file)
--- a/src/jalview/schemabinding/version2/VAMSAS.java
+++ b/src/jalview/schemabinding/version2/VAMSAS.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/VamsasModel.java b/src/jalview/schemabinding/version2/VamsasModel.java

index f0228a0..431e74b 100644 (file)
--- a/src/jalview/schemabinding/version2/VamsasModel.java
+++ b/src/jalview/schemabinding/version2/VamsasModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/Viewport.java b/src/jalview/schemabinding/version2/Viewport.java

index 1faf480..c9099f9 100644 (file)
--- a/src/jalview/schemabinding/version2/Viewport.java
+++ b/src/jalview/schemabinding/version2/Viewport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/WebServiceParameterSet.java b/src/jalview/schemabinding/version2/WebServiceParameterSet.java

index 822a175..fe613bd 100644 (file)
--- a/src/jalview/schemabinding/version2/WebServiceParameterSet.java
+++ b/src/jalview/schemabinding/version2/WebServiceParameterSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java

index 6601bfa..5d7446b 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AlcodMapDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java

index 79c9abe..c3c267f 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AlcodonDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java

index 2557a6a..47a3a19 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AlcodonFrameDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java

index ee5b714..953a82a 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AnnotationColourSchemeDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java

index d0ff7b8..f7ca431 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AnnotationColoursDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java

index e401d8e..723820e 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java b/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java

index 7c71cef..24ccbcf 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/AnnotationElementDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java b/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java

index c87e9de..53a985c 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/CalcIdParamDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java b/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java

index 4f384b1..ad1a0ee 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/ColourDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java b/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java

index 7399831..c99ad71 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/DBRefDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java b/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java

index ebad366..140589a 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/FeatureDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java b/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java

index 9ff05db..73e6f2b 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/FeatureSettingsDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java b/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java

index 316777b..68a2bcb 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/FeaturesDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java b/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java

index bad65ce..6502d90 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/GroupDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java b/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java

index 916a92c..57f5a79 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/HiddenColumnsDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java b/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java

index aa7cbe9..181c7a1 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/JGroupDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java b/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java

index 547597d..85d0786 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/JSeqDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java b/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java

index d310ae9..89be47b 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/JalviewModelDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java b/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java

index ff95611..da4c5d1 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java b/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java

index d28378a..bed111c 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/JalviewUserColoursDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java b/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java

index 1efb210..6c7c32e 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/MapListFromDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java b/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java

index 27ee1c7..efa1a5c 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/MapListToDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java b/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java

index 0c14ecf..7e2a7f8 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/MapListTypeDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java b/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java

index 60c5b1f..1a02167 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/MappingChoiceDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java b/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java

index 81c24ee..b199e91 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/MappingDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java b/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java

index 4595408..c6351f9 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/OtherDataDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java b/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java

index e3952dc..5ec79c9 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/PdbentryDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java b/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java

index a44445f..0b635c0 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/PdbentryItemDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java b/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java

index c7dc025..2fec649 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/PdbidsDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java b/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java

index 56f2742..7700ed3 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/PropertyDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java b/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java

index bee6cb2..bed150c 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/SequenceDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java b/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java

index 9a35b35..3fccdc9 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java b/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java

index dcdc8e4..2f0e09c 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/SequenceSetPropertiesDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java b/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java

index 8b2aa09..c9a9cc2 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/SequenceTypeDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java b/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java

index ea40444..d49e1dd 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/SettingDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java b/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java

index 80629f8..98bd90c 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/StructureStateDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java b/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java

index 87c6196..395cfb0 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/ThresholdLineDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java b/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java

index 69b4841..39089df 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/TreeDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java b/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java

index 474daad..8daae35 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/UserColourSchemeDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java b/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java

index e190888..c3306d6 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/UserColoursDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java b/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java

index 4cc6bfc..0b8fc7b 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/VAMSASDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java b/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java

index 00139d4..99f76ef 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/VamsasModelDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java b/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java

index 3e3ee2d..ead0e66 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/ViewportDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java b/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java

index e57d45b..99a48cf 100644 (file)
--- a/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
+++ b/src/jalview/schemabinding/version2/descriptors/WebServiceParameterSetDescriptor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/AnnotationColourGradient.java b/src/jalview/schemes/AnnotationColourGradient.java

index efad430..1422ce5 100755 (executable)
--- a/src/jalview/schemes/AnnotationColourGradient.java
+++ b/src/jalview/schemes/AnnotationColourGradient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java

index 41f7781..2b16cc9 100755 (executable)
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/BuriedColourScheme.java b/src/jalview/schemes/BuriedColourScheme.java

index e9220b2..30e9131 100755 (executable)
--- a/src/jalview/schemes/BuriedColourScheme.java
+++ b/src/jalview/schemes/BuriedColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ClustalxColourScheme.java b/src/jalview/schemes/ClustalxColourScheme.java

index 92d2dd7..6eb2ac1 100755 (executable)
--- a/src/jalview/schemes/ClustalxColourScheme.java
+++ b/src/jalview/schemes/ClustalxColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ColourSchemeI.java b/src/jalview/schemes/ColourSchemeI.java

index 67d23ea..dd1c5be 100755 (executable)
--- a/src/jalview/schemes/ColourSchemeI.java
+++ b/src/jalview/schemes/ColourSchemeI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ColourSchemeProperty.java b/src/jalview/schemes/ColourSchemeProperty.java

index 57a2dd9..bd40353 100755 (executable)
--- a/src/jalview/schemes/ColourSchemeProperty.java
+++ b/src/jalview/schemes/ColourSchemeProperty.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/Consensus.java b/src/jalview/schemes/Consensus.java

index 1016ccb..cccc995 100755 (executable)
--- a/src/jalview/schemes/Consensus.java
+++ b/src/jalview/schemes/Consensus.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/CovariationColourScheme.java b/src/jalview/schemes/CovariationColourScheme.java

index e0521f4..ca81f5f 100644 (file)
--- a/src/jalview/schemes/CovariationColourScheme.java
+++ b/src/jalview/schemes/CovariationColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/FollowerColourScheme.java b/src/jalview/schemes/FollowerColourScheme.java

index 54b0848..6996212 100644 (file)
--- a/src/jalview/schemes/FollowerColourScheme.java
+++ b/src/jalview/schemes/FollowerColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/GraduatedColor.java b/src/jalview/schemes/GraduatedColor.java

index e8bf483..8e125cf 100644 (file)
--- a/src/jalview/schemes/GraduatedColor.java
+++ b/src/jalview/schemes/GraduatedColor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/HelixColourScheme.java b/src/jalview/schemes/HelixColourScheme.java

index 466ff0b..325817c 100755 (executable)
--- a/src/jalview/schemes/HelixColourScheme.java
+++ b/src/jalview/schemes/HelixColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/HydrophobicColourScheme.java b/src/jalview/schemes/HydrophobicColourScheme.java

index 50e297a..f3b55a3 100755 (executable)
--- a/src/jalview/schemes/HydrophobicColourScheme.java
+++ b/src/jalview/schemes/HydrophobicColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/NucleotideColourScheme.java b/src/jalview/schemes/NucleotideColourScheme.java

index f32e291..4f6c2a6 100755 (executable)
--- a/src/jalview/schemes/NucleotideColourScheme.java
+++ b/src/jalview/schemes/NucleotideColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/PIDColourScheme.java b/src/jalview/schemes/PIDColourScheme.java

index bccf964..40653c6 100755 (executable)
--- a/src/jalview/schemes/PIDColourScheme.java
+++ b/src/jalview/schemes/PIDColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/PurinePyrimidineColourScheme.java b/src/jalview/schemes/PurinePyrimidineColourScheme.java

index 6bc28ac..7e4f568 100644 (file)
--- a/src/jalview/schemes/PurinePyrimidineColourScheme.java
+++ b/src/jalview/schemes/PurinePyrimidineColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/RNAHelicesColour.java b/src/jalview/schemes/RNAHelicesColour.java

index 152ad9a..583405b 100644 (file)
--- a/src/jalview/schemes/RNAHelicesColour.java
+++ b/src/jalview/schemes/RNAHelicesColour.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/RNAHelicesColourChooser.java b/src/jalview/schemes/RNAHelicesColourChooser.java

index a7bdd8e..d6b514e 100644 (file)
--- a/src/jalview/schemes/RNAHelicesColourChooser.java
+++ b/src/jalview/schemes/RNAHelicesColourChooser.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/RNAInteractionColourScheme.java b/src/jalview/schemes/RNAInteractionColourScheme.java

index 6ecc418..2be7486 100644 (file)
--- a/src/jalview/schemes/RNAInteractionColourScheme.java
+++ b/src/jalview/schemes/RNAInteractionColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ResidueColourScheme.java b/src/jalview/schemes/ResidueColourScheme.java

index 47b8fbd..1064c38 100755 (executable)
--- a/src/jalview/schemes/ResidueColourScheme.java
+++ b/src/jalview/schemes/ResidueColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java

index 8acf1f2..a531df5 100755 (executable)
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ScoreColourScheme.java b/src/jalview/schemes/ScoreColourScheme.java

index 2a377a2..442b90b 100755 (executable)
--- a/src/jalview/schemes/ScoreColourScheme.java
+++ b/src/jalview/schemes/ScoreColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ScoreMatrix.java b/src/jalview/schemes/ScoreMatrix.java

index ac02ee5..c75cd0d 100644 (file)
--- a/src/jalview/schemes/ScoreMatrix.java
+++ b/src/jalview/schemes/ScoreMatrix.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/StrandColourScheme.java b/src/jalview/schemes/StrandColourScheme.java

index e7f8ae8..52e3b62 100755 (executable)
--- a/src/jalview/schemes/StrandColourScheme.java
+++ b/src/jalview/schemes/StrandColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/TCoffeeColourScheme.java b/src/jalview/schemes/TCoffeeColourScheme.java

index b5c24ce..298c26f 100644 (file)
--- a/src/jalview/schemes/TCoffeeColourScheme.java
+++ b/src/jalview/schemes/TCoffeeColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/TaylorColourScheme.java b/src/jalview/schemes/TaylorColourScheme.java

index 59d696d..eb42c49 100755 (executable)
--- a/src/jalview/schemes/TaylorColourScheme.java
+++ b/src/jalview/schemes/TaylorColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/TurnColourScheme.java b/src/jalview/schemes/TurnColourScheme.java

index ce676b4..eb393c5 100755 (executable)
--- a/src/jalview/schemes/TurnColourScheme.java
+++ b/src/jalview/schemes/TurnColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/UserColourScheme.java b/src/jalview/schemes/UserColourScheme.java

index 8ca0b86..21f6b63 100755 (executable)
--- a/src/jalview/schemes/UserColourScheme.java
+++ b/src/jalview/schemes/UserColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/schemes/ZappoColourScheme.java b/src/jalview/schemes/ZappoColourScheme.java

index f4aef2a..46cfa5d 100755 (executable)
--- a/src/jalview/schemes/ZappoColourScheme.java
+++ b/src/jalview/schemes/ZappoColourScheme.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/AlignmentViewPanelListener.java b/src/jalview/structure/AlignmentViewPanelListener.java

index ebebc6a..6056ded 100644 (file)
--- a/src/jalview/structure/AlignmentViewPanelListener.java
+++ b/src/jalview/structure/AlignmentViewPanelListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/SecondaryStructureListener.java b/src/jalview/structure/SecondaryStructureListener.java

index 2402f87..3a6ebd5 100644 (file)
--- a/src/jalview/structure/SecondaryStructureListener.java
+++ b/src/jalview/structure/SecondaryStructureListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/SelectionListener.java b/src/jalview/structure/SelectionListener.java

index ec7aed1..0df9c77 100644 (file)
--- a/src/jalview/structure/SelectionListener.java
+++ b/src/jalview/structure/SelectionListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/SelectionSource.java b/src/jalview/structure/SelectionSource.java

index 0c54ebf..3f7f579 100644 (file)
--- a/src/jalview/structure/SelectionSource.java
+++ b/src/jalview/structure/SelectionSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/SequenceListener.java b/src/jalview/structure/SequenceListener.java

index 83a9fd0..f20fecb 100644 (file)
--- a/src/jalview/structure/SequenceListener.java
+++ b/src/jalview/structure/SequenceListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/StructureListener.java b/src/jalview/structure/StructureListener.java

index 8ac002b..2698d9d 100644 (file)
--- a/src/jalview/structure/StructureListener.java
+++ b/src/jalview/structure/StructureListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/StructureMapping.java b/src/jalview/structure/StructureMapping.java

index e0033e1..874f844 100644 (file)
--- a/src/jalview/structure/StructureMapping.java
+++ b/src/jalview/structure/StructureMapping.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/StructureMappingcommandSet.java b/src/jalview/structure/StructureMappingcommandSet.java

index 0901680..d83da5a 100644 (file)
--- a/src/jalview/structure/StructureMappingcommandSet.java
+++ b/src/jalview/structure/StructureMappingcommandSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java

index af00798..e9aa575 100644 (file)
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/VamsasListener.java b/src/jalview/structure/VamsasListener.java

index 26ebdc1..e900014 100644 (file)
--- a/src/jalview/structure/VamsasListener.java
+++ b/src/jalview/structure/VamsasListener.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structure/VamsasSource.java b/src/jalview/structure/VamsasSource.java

index 3c8ec56..1ed8d3e 100644 (file)
--- a/src/jalview/structure/VamsasSource.java
+++ b/src/jalview/structure/VamsasSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/structures/models/SequenceStructureBindingModel.java b/src/jalview/structures/models/SequenceStructureBindingModel.java

index 7d023a8..40fb8a9 100644 (file)
--- a/src/jalview/structures/models/SequenceStructureBindingModel.java
+++ b/src/jalview/structures/models/SequenceStructureBindingModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/AWTConsole.java b/src/jalview/util/AWTConsole.java

index 871b480..3c20c58 100644 (file)
--- a/src/jalview/util/AWTConsole.java
+++ b/src/jalview/util/AWTConsole.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/BrowserLauncher.java b/src/jalview/util/BrowserLauncher.java

index 60e2fed..43390db 100755 (executable)
--- a/src/jalview/util/BrowserLauncher.java
+++ b/src/jalview/util/BrowserLauncher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/ColorUtils.java b/src/jalview/util/ColorUtils.java

index fd76086..074bc35 100644 (file)
--- a/src/jalview/util/ColorUtils.java
+++ b/src/jalview/util/ColorUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/Comparison.java b/src/jalview/util/Comparison.java

index 8931b23..9b2edba 100644 (file)
--- a/src/jalview/util/Comparison.java
+++ b/src/jalview/util/Comparison.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/DBRefUtils.java b/src/jalview/util/DBRefUtils.java

index 4cc888d..b7d5559 100755 (executable)
--- a/src/jalview/util/DBRefUtils.java
+++ b/src/jalview/util/DBRefUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/Format.java b/src/jalview/util/Format.java

index a7b311b..d4e3729 100755 (executable)
--- a/src/jalview/util/Format.java
+++ b/src/jalview/util/Format.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/GroupUrlLink.java b/src/jalview/util/GroupUrlLink.java

index e8af4cd..2b5dc74 100644 (file)
--- a/src/jalview/util/GroupUrlLink.java
+++ b/src/jalview/util/GroupUrlLink.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/ImageMaker.java b/src/jalview/util/ImageMaker.java

index b410be6..252bae1 100755 (executable)
--- a/src/jalview/util/ImageMaker.java
+++ b/src/jalview/util/ImageMaker.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/MapList.java b/src/jalview/util/MapList.java

index eb414b9..79623df 100644 (file)
--- a/src/jalview/util/MapList.java
+++ b/src/jalview/util/MapList.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/MessageManager.java b/src/jalview/util/MessageManager.java

index cd885f0..db2cfec 100644 (file)
--- a/src/jalview/util/MessageManager.java
+++ b/src/jalview/util/MessageManager.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/ParseHtmlBodyAndLinks.java b/src/jalview/util/ParseHtmlBodyAndLinks.java

index 2330cca..a937b3b 100644 (file)
--- a/src/jalview/util/ParseHtmlBodyAndLinks.java
+++ b/src/jalview/util/ParseHtmlBodyAndLinks.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/Platform.java b/src/jalview/util/Platform.java

index 21decf3..c9907ef 100644 (file)
--- a/src/jalview/util/Platform.java
+++ b/src/jalview/util/Platform.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/QuickSort.java b/src/jalview/util/QuickSort.java

index e3bb514..95c6ded 100755 (executable)
--- a/src/jalview/util/QuickSort.java
+++ b/src/jalview/util/QuickSort.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/ShiftList.java b/src/jalview/util/ShiftList.java

index 2b3a8a4..37b2c2d 100644 (file)
--- a/src/jalview/util/ShiftList.java
+++ b/src/jalview/util/ShiftList.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/TableSorter.java b/src/jalview/util/TableSorter.java

index 496ce5a..ceaa29d 100755 (executable)
--- a/src/jalview/util/TableSorter.java
+++ b/src/jalview/util/TableSorter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/UrlLink.java b/src/jalview/util/UrlLink.java

index c716110..6d80338 100644 (file)
--- a/src/jalview/util/UrlLink.java
+++ b/src/jalview/util/UrlLink.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/util/jarInputStreamProvider.java b/src/jalview/util/jarInputStreamProvider.java

index 86bf0eb..f4b5930 100644 (file)
--- a/src/jalview/util/jarInputStreamProvider.java
+++ b/src/jalview/util/jarInputStreamProvider.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java

index 1b42faf..903b89c 100644 (file)
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/viewmodel/PCAModel.java b/src/jalview/viewmodel/PCAModel.java

index 2983851..f863ade 100644 (file)
--- a/src/jalview/viewmodel/PCAModel.java
+++ b/src/jalview/viewmodel/PCAModel.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/workers/AlignCalcManager.java b/src/jalview/workers/AlignCalcManager.java

index 24de71e..4f6538b 100644 (file)
--- a/src/jalview/workers/AlignCalcManager.java
+++ b/src/jalview/workers/AlignCalcManager.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/workers/AlignCalcWorker.java b/src/jalview/workers/AlignCalcWorker.java

index a54fb83..3ed06f1 100644 (file)
--- a/src/jalview/workers/AlignCalcWorker.java
+++ b/src/jalview/workers/AlignCalcWorker.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/workers/ConsensusThread.java b/src/jalview/workers/ConsensusThread.java

index c754ee3..a8c33ce 100644 (file)
--- a/src/jalview/workers/ConsensusThread.java
+++ b/src/jalview/workers/ConsensusThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/workers/ConservationThread.java b/src/jalview/workers/ConservationThread.java

index a7180a0..d98f42c 100644 (file)
--- a/src/jalview/workers/ConservationThread.java
+++ b/src/jalview/workers/ConservationThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/workers/StrucConsensusThread.java b/src/jalview/workers/StrucConsensusThread.java

index 3230a36..6449a2b 100644 (file)
--- a/src/jalview/workers/StrucConsensusThread.java
+++ b/src/jalview/workers/StrucConsensusThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/AWSThread.java b/src/jalview/ws/AWSThread.java

index edb56a9..42faa11 100644 (file)
--- a/src/jalview/ws/AWSThread.java
+++ b/src/jalview/ws/AWSThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/AWsJob.java b/src/jalview/ws/AWsJob.java

index 7362f22..d8767aa 100644 (file)
--- a/src/jalview/ws/AWsJob.java
+++ b/src/jalview/ws/AWsJob.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/DBRefFetcher.java b/src/jalview/ws/DBRefFetcher.java

index f5789ea..9f8fb82 100644 (file)
--- a/src/jalview/ws/DBRefFetcher.java
+++ b/src/jalview/ws/DBRefFetcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/DasSequenceFeatureFetcher.java b/src/jalview/ws/DasSequenceFeatureFetcher.java

index a778ab1..d8d2db4 100644 (file)
--- a/src/jalview/ws/DasSequenceFeatureFetcher.java
+++ b/src/jalview/ws/DasSequenceFeatureFetcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/EnfinEnvision2OneWay.java b/src/jalview/ws/EnfinEnvision2OneWay.java

index 693c888..058d9dd 100644 (file)
--- a/src/jalview/ws/EnfinEnvision2OneWay.java
+++ b/src/jalview/ws/EnfinEnvision2OneWay.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/HttpClientUtils.java b/src/jalview/ws/HttpClientUtils.java

index 229fa4e..ed7288f 100644 (file)
--- a/src/jalview/ws/HttpClientUtils.java
+++ b/src/jalview/ws/HttpClientUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/JobStateSummary.java b/src/jalview/ws/JobStateSummary.java

index d0f6d7d..cf625ad 100644 (file)
--- a/src/jalview/ws/JobStateSummary.java
+++ b/src/jalview/ws/JobStateSummary.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/SequenceFetcher.java b/src/jalview/ws/SequenceFetcher.java

index caf5b5e..c182dfa 100644 (file)
--- a/src/jalview/ws/SequenceFetcher.java
+++ b/src/jalview/ws/SequenceFetcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/WSClient.java b/src/jalview/ws/WSClient.java

index 34b3eb9..36f0afe 100755 (executable)
--- a/src/jalview/ws/WSClient.java
+++ b/src/jalview/ws/WSClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/WSClientI.java b/src/jalview/ws/WSClientI.java

index 051d306..4bc0295 100755 (executable)
--- a/src/jalview/ws/WSClientI.java
+++ b/src/jalview/ws/WSClientI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/WSMenuEntryProviderI.java b/src/jalview/ws/WSMenuEntryProviderI.java

index 49bc1e0..9ac4b4e 100644 (file)
--- a/src/jalview/ws/WSMenuEntryProviderI.java
+++ b/src/jalview/ws/WSMenuEntryProviderI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java

index 1672381..cafef4a 100644 (file)
--- a/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
+++ b/src/jalview/ws/dbsources/EbiFileRetrievedProxy.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/EmblCdsSouce.java b/src/jalview/ws/dbsources/EmblCdsSouce.java

index a4423b3..1499245 100644 (file)
--- a/src/jalview/ws/dbsources/EmblCdsSouce.java
+++ b/src/jalview/ws/dbsources/EmblCdsSouce.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/EmblSource.java b/src/jalview/ws/dbsources/EmblSource.java

index e5f0c62..89a1196 100644 (file)
--- a/src/jalview/ws/dbsources/EmblSource.java
+++ b/src/jalview/ws/dbsources/EmblSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/EmblXmlSource.java b/src/jalview/ws/dbsources/EmblXmlSource.java

index ec5c62d..2c9aa56 100644 (file)
--- a/src/jalview/ws/dbsources/EmblXmlSource.java
+++ b/src/jalview/ws/dbsources/EmblXmlSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/GeneDbSource.java b/src/jalview/ws/dbsources/GeneDbSource.java

index 6fbc081..3523d77 100644 (file)
--- a/src/jalview/ws/dbsources/GeneDbSource.java
+++ b/src/jalview/ws/dbsources/GeneDbSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/Pdb.java b/src/jalview/ws/dbsources/Pdb.java

index f222aaa..8503167 100644 (file)
--- a/src/jalview/ws/dbsources/Pdb.java
+++ b/src/jalview/ws/dbsources/Pdb.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/Pfam.java b/src/jalview/ws/dbsources/Pfam.java

index 489db1f..b2d3dc9 100644 (file)
--- a/src/jalview/ws/dbsources/Pfam.java
+++ b/src/jalview/ws/dbsources/Pfam.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/PfamFull.java b/src/jalview/ws/dbsources/PfamFull.java

index 9b4587e..9a92886 100644 (file)
--- a/src/jalview/ws/dbsources/PfamFull.java
+++ b/src/jalview/ws/dbsources/PfamFull.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/PfamSeed.java b/src/jalview/ws/dbsources/PfamSeed.java

index bc12360..db34782 100644 (file)
--- a/src/jalview/ws/dbsources/PfamSeed.java
+++ b/src/jalview/ws/dbsources/PfamSeed.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/Rfam.java b/src/jalview/ws/dbsources/Rfam.java

index 3a115f1..122ff8d 100644 (file)
--- a/src/jalview/ws/dbsources/Rfam.java
+++ b/src/jalview/ws/dbsources/Rfam.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/RfamFull.java b/src/jalview/ws/dbsources/RfamFull.java

index 483114c..562d9d8 100644 (file)
--- a/src/jalview/ws/dbsources/RfamFull.java
+++ b/src/jalview/ws/dbsources/RfamFull.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/RfamSeed.java b/src/jalview/ws/dbsources/RfamSeed.java

index 1896eb4..ab30a85 100644 (file)
--- a/src/jalview/ws/dbsources/RfamSeed.java
+++ b/src/jalview/ws/dbsources/RfamSeed.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/Uniprot.java b/src/jalview/ws/dbsources/Uniprot.java

index 359f2b1..1cb8e14 100644 (file)
--- a/src/jalview/ws/dbsources/Uniprot.java
+++ b/src/jalview/ws/dbsources/Uniprot.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/UnprotName.java b/src/jalview/ws/dbsources/UnprotName.java

index 2f65b12..28d2a6c 100644 (file)
--- a/src/jalview/ws/dbsources/UnprotName.java
+++ b/src/jalview/ws/dbsources/UnprotName.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/Xfam.java b/src/jalview/ws/dbsources/Xfam.java

index d76bbb5..d06151b 100644 (file)
--- a/src/jalview/ws/dbsources/Xfam.java
+++ b/src/jalview/ws/dbsources/Xfam.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java b/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java

index 622bf06..bfc4f6f 100644 (file)
--- a/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
+++ b/src/jalview/ws/dbsources/das/api/DasSourceRegistryI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/das/api/jalviewSourceI.java b/src/jalview/ws/dbsources/das/api/jalviewSourceI.java

index 681faa4..7966d77 100644 (file)
--- a/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
+++ b/src/jalview/ws/dbsources/das/api/jalviewSourceI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java

index cb5705e..3ad3573 100644 (file)
--- a/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
+++ b/src/jalview/ws/dbsources/das/datamodel/DasSequenceSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java b/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java

index 08e14e8..88d9db1 100644 (file)
--- a/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
+++ b/src/jalview/ws/dbsources/das/datamodel/DasSourceRegistry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java b/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java

index c994fd5..f8efb49 100644 (file)
--- a/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
+++ b/src/jalview/ws/dbsources/das/datamodel/JalviewSource.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/ebi/EBIFetchClient.java b/src/jalview/ws/ebi/EBIFetchClient.java

index fe9e28f..9397c0e 100644 (file)
--- a/src/jalview/ws/ebi/EBIFetchClient.java
+++ b/src/jalview/ws/ebi/EBIFetchClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/io/mime/HttpContentHandler.java b/src/jalview/ws/io/mime/HttpContentHandler.java

index 4b53cf6..1e37fb6 100644 (file)
--- a/src/jalview/ws/io/mime/HttpContentHandler.java
+++ b/src/jalview/ws/io/mime/HttpContentHandler.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/io/mime/JalviewMimeContentHandler.java b/src/jalview/ws/io/mime/JalviewMimeContentHandler.java

index 3675a7f..8fef8da 100644 (file)
--- a/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
+++ b/src/jalview/ws/io/mime/JalviewMimeContentHandler.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/io/mime/MimeTypes.java b/src/jalview/ws/io/mime/MimeTypes.java

index 40248cf..872eec7 100644 (file)
--- a/src/jalview/ws/io/mime/MimeTypes.java
+++ b/src/jalview/ws/io/mime/MimeTypes.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/Annotate3D.java b/src/jalview/ws/jws1/Annotate3D.java

index 4502b39..509d4ae 100644 (file)
--- a/src/jalview/ws/jws1/Annotate3D.java
+++ b/src/jalview/ws/jws1/Annotate3D.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/Discoverer.java b/src/jalview/ws/jws1/Discoverer.java

index 629b3d6..7cb0481 100644 (file)
--- a/src/jalview/ws/jws1/Discoverer.java
+++ b/src/jalview/ws/jws1/Discoverer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/JPredClient.java b/src/jalview/ws/jws1/JPredClient.java

index df0e091..ff2432f 100644 (file)
--- a/src/jalview/ws/jws1/JPredClient.java
+++ b/src/jalview/ws/jws1/JPredClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/JPredThread.java b/src/jalview/ws/jws1/JPredThread.java

index 4e95b14..0fdc3ff 100644 (file)
--- a/src/jalview/ws/jws1/JPredThread.java
+++ b/src/jalview/ws/jws1/JPredThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/JWS1Thread.java b/src/jalview/ws/jws1/JWS1Thread.java

index 161a022..6810f4e 100644 (file)
--- a/src/jalview/ws/jws1/JWS1Thread.java
+++ b/src/jalview/ws/jws1/JWS1Thread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/MsaWSClient.java b/src/jalview/ws/jws1/MsaWSClient.java

index 5d84286..1a833ee 100644 (file)
--- a/src/jalview/ws/jws1/MsaWSClient.java
+++ b/src/jalview/ws/jws1/MsaWSClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/MsaWSThread.java b/src/jalview/ws/jws1/MsaWSThread.java

index a6ba751..44359cf 100644 (file)
--- a/src/jalview/ws/jws1/MsaWSThread.java
+++ b/src/jalview/ws/jws1/MsaWSThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/SeqSearchWSClient.java b/src/jalview/ws/jws1/SeqSearchWSClient.java

index c1935b4..5ffe36e 100644 (file)
--- a/src/jalview/ws/jws1/SeqSearchWSClient.java
+++ b/src/jalview/ws/jws1/SeqSearchWSClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/SeqSearchWSThread.java b/src/jalview/ws/jws1/SeqSearchWSThread.java

index 7c2ea49..d920e37 100644 (file)
--- a/src/jalview/ws/jws1/SeqSearchWSThread.java
+++ b/src/jalview/ws/jws1/SeqSearchWSThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/WS1Client.java b/src/jalview/ws/jws1/WS1Client.java

index 9001c61..747a7f7 100644 (file)
--- a/src/jalview/ws/jws1/WS1Client.java
+++ b/src/jalview/ws/jws1/WS1Client.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws1/WSJob.java b/src/jalview/ws/jws1/WSJob.java

index d687368..0cf7c45 100644 (file)
--- a/src/jalview/ws/jws1/WSJob.java
+++ b/src/jalview/ws/jws1/WSJob.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/AAConClient.java b/src/jalview/ws/jws2/AAConClient.java

index 66338b1..3f5fc60 100644 (file)
--- a/src/jalview/ws/jws2/AAConClient.java
+++ b/src/jalview/ws/jws2/AAConClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/AADisorderClient.java b/src/jalview/ws/jws2/AADisorderClient.java

index 6c438be..81bd638 100644 (file)
--- a/src/jalview/ws/jws2/AADisorderClient.java
+++ b/src/jalview/ws/jws2/AADisorderClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/AWS2Thread.java b/src/jalview/ws/jws2/AWS2Thread.java

index 16f943c..0307933 100644 (file)
--- a/src/jalview/ws/jws2/AWS2Thread.java
+++ b/src/jalview/ws/jws2/AWS2Thread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JPred301Client.java b/src/jalview/ws/jws2/JPred301Client.java

index 8328d45..7d7eb91 100644 (file)
--- a/src/jalview/ws/jws2/JPred301Client.java
+++ b/src/jalview/ws/jws2/JPred301Client.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JWs2Job.java b/src/jalview/ws/jws2/JWs2Job.java

index aeb2626..ea0382b 100644 (file)
--- a/src/jalview/ws/jws2/JWs2Job.java
+++ b/src/jalview/ws/jws2/JWs2Job.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JabaParamStore.java b/src/jalview/ws/jws2/JabaParamStore.java

index 7c0eabd..19af7b8 100644 (file)
--- a/src/jalview/ws/jws2/JabaParamStore.java
+++ b/src/jalview/ws/jws2/JabaParamStore.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JabaPreset.java b/src/jalview/ws/jws2/JabaPreset.java

index c47c63a..22965cf 100644 (file)
--- a/src/jalview/ws/jws2/JabaPreset.java
+++ b/src/jalview/ws/jws2/JabaPreset.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JabaWsServerQuery.java b/src/jalview/ws/jws2/JabaWsServerQuery.java

index b3aee55..70a3475 100644 (file)
--- a/src/jalview/ws/jws2/JabaWsServerQuery.java
+++ b/src/jalview/ws/jws2/JabaWsServerQuery.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JabawsCalcWorker.java b/src/jalview/ws/jws2/JabawsCalcWorker.java

index e01c648..b44f533 100644 (file)
--- a/src/jalview/ws/jws2/JabawsCalcWorker.java
+++ b/src/jalview/ws/jws2/JabawsCalcWorker.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java b/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java

index 3f0e47d..679ecf7 100644 (file)
--- a/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
+++ b/src/jalview/ws/jws2/JabawsMsaInterfaceAlignCalcWorker.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/Jws2Client.java b/src/jalview/ws/jws2/Jws2Client.java

index 751d330..fd116c2 100644 (file)
--- a/src/jalview/ws/jws2/Jws2Client.java
+++ b/src/jalview/ws/jws2/Jws2Client.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/Jws2Discoverer.java b/src/jalview/ws/jws2/Jws2Discoverer.java

index 7a8eee9..dbcecec 100644 (file)
--- a/src/jalview/ws/jws2/Jws2Discoverer.java
+++ b/src/jalview/ws/jws2/Jws2Discoverer.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/MsaWSClient.java b/src/jalview/ws/jws2/MsaWSClient.java

index e7301a6..49a3412 100644 (file)
--- a/src/jalview/ws/jws2/MsaWSClient.java
+++ b/src/jalview/ws/jws2/MsaWSClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/MsaWSThread.java b/src/jalview/ws/jws2/MsaWSThread.java

index 2bae428..d2bb897 100644 (file)
--- a/src/jalview/ws/jws2/MsaWSThread.java
+++ b/src/jalview/ws/jws2/MsaWSThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/ParameterUtils.java b/src/jalview/ws/jws2/ParameterUtils.java

index 8916be9..8437929 100644 (file)
--- a/src/jalview/ws/jws2/ParameterUtils.java
+++ b/src/jalview/ws/jws2/ParameterUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/RNAalifoldClient.java b/src/jalview/ws/jws2/RNAalifoldClient.java

index 253a797..b3000b3 100644 (file)
--- a/src/jalview/ws/jws2/RNAalifoldClient.java
+++ b/src/jalview/ws/jws2/RNAalifoldClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/SequenceAnnotationWSClient.java b/src/jalview/ws/jws2/SequenceAnnotationWSClient.java

index 3976678..206747a 100644 (file)
--- a/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
+++ b/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/dm/AAConSettings.java b/src/jalview/ws/jws2/dm/AAConSettings.java

index e78172e..1d30cc7 100644 (file)
--- a/src/jalview/ws/jws2/dm/AAConSettings.java
+++ b/src/jalview/ws/jws2/dm/AAConSettings.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/dm/JabaOption.java b/src/jalview/ws/jws2/dm/JabaOption.java

index 995af35..5af8a20 100644 (file)
--- a/src/jalview/ws/jws2/dm/JabaOption.java
+++ b/src/jalview/ws/jws2/dm/JabaOption.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/dm/JabaParameter.java b/src/jalview/ws/jws2/dm/JabaParameter.java

index dac8648..4c71896 100644 (file)
--- a/src/jalview/ws/jws2/dm/JabaParameter.java
+++ b/src/jalview/ws/jws2/dm/JabaParameter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/dm/JabaValueConstrain.java b/src/jalview/ws/jws2/dm/JabaValueConstrain.java

index 920b73e..14113b6 100644 (file)
--- a/src/jalview/ws/jws2/dm/JabaValueConstrain.java
+++ b/src/jalview/ws/jws2/dm/JabaValueConstrain.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/dm/JabaWsParamSet.java b/src/jalview/ws/jws2/dm/JabaWsParamSet.java

index d6d1d5c..80d9b47 100644 (file)
--- a/src/jalview/ws/jws2/dm/JabaWsParamSet.java
+++ b/src/jalview/ws/jws2/dm/JabaWsParamSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/jabaws2/Jws2Instance.java b/src/jalview/ws/jws2/jabaws2/Jws2Instance.java

index 120ce27..7715dff 100644 (file)
--- a/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
+++ b/src/jalview/ws/jws2/jabaws2/Jws2Instance.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java b/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java

index 696dba3..e30488c 100644 (file)
--- a/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
+++ b/src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/ArgumentI.java b/src/jalview/ws/params/ArgumentI.java

index b2a247f..0d84bde 100644 (file)
--- a/src/jalview/ws/params/ArgumentI.java
+++ b/src/jalview/ws/params/ArgumentI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/AutoCalcSetting.java b/src/jalview/ws/params/AutoCalcSetting.java

index fe7c4a0..5cd03d1 100644 (file)
--- a/src/jalview/ws/params/AutoCalcSetting.java
+++ b/src/jalview/ws/params/AutoCalcSetting.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/InvalidArgumentException.java b/src/jalview/ws/params/InvalidArgumentException.java

index f2adbd2..d01a253 100644 (file)
--- a/src/jalview/ws/params/InvalidArgumentException.java
+++ b/src/jalview/ws/params/InvalidArgumentException.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/OptionI.java b/src/jalview/ws/params/OptionI.java

index 17e2f01..b87d775 100644 (file)
--- a/src/jalview/ws/params/OptionI.java
+++ b/src/jalview/ws/params/OptionI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/ParamDatastoreI.java b/src/jalview/ws/params/ParamDatastoreI.java

index 0d653af..85c0713 100644 (file)
--- a/src/jalview/ws/params/ParamDatastoreI.java
+++ b/src/jalview/ws/params/ParamDatastoreI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/ParamManager.java b/src/jalview/ws/params/ParamManager.java

index 60bee66..4510ec2 100644 (file)
--- a/src/jalview/ws/params/ParamManager.java
+++ b/src/jalview/ws/params/ParamManager.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/ParameterI.java b/src/jalview/ws/params/ParameterI.java

index 0dd3b0c..8b9d760 100644 (file)
--- a/src/jalview/ws/params/ParameterI.java
+++ b/src/jalview/ws/params/ParameterI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/ValueConstrainI.java b/src/jalview/ws/params/ValueConstrainI.java

index eaba0a4..a67abcd 100644 (file)
--- a/src/jalview/ws/params/ValueConstrainI.java
+++ b/src/jalview/ws/params/ValueConstrainI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/WsParamSetI.java b/src/jalview/ws/params/WsParamSetI.java

index 2dc2c71..a4bf6c1 100644 (file)
--- a/src/jalview/ws/params/WsParamSetI.java
+++ b/src/jalview/ws/params/WsParamSetI.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/simple/BooleanOption.java b/src/jalview/ws/params/simple/BooleanOption.java

index d0ae16a..b69da25 100644 (file)
--- a/src/jalview/ws/params/simple/BooleanOption.java
+++ b/src/jalview/ws/params/simple/BooleanOption.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/simple/IntegerParameter.java b/src/jalview/ws/params/simple/IntegerParameter.java

index 7a13b41..3d50a6a 100644 (file)
--- a/src/jalview/ws/params/simple/IntegerParameter.java
+++ b/src/jalview/ws/params/simple/IntegerParameter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/simple/Option.java b/src/jalview/ws/params/simple/Option.java

index 5378dbd..22f4d2a 100644 (file)
--- a/src/jalview/ws/params/simple/Option.java
+++ b/src/jalview/ws/params/simple/Option.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/simple/Parameter.java b/src/jalview/ws/params/simple/Parameter.java

index 7bd64be..5a0cb1b 100644 (file)
--- a/src/jalview/ws/params/simple/Parameter.java
+++ b/src/jalview/ws/params/simple/Parameter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/params/simple/StringChoiceParameter.java b/src/jalview/ws/params/simple/StringChoiceParameter.java

index 399441f..918e408 100644 (file)
--- a/src/jalview/ws/params/simple/StringChoiceParameter.java
+++ b/src/jalview/ws/params/simple/StringChoiceParameter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/AlignmentProcessor.java b/src/jalview/ws/rest/AlignmentProcessor.java

index da583fd..52d5838 100644 (file)
--- a/src/jalview/ws/rest/AlignmentProcessor.java
+++ b/src/jalview/ws/rest/AlignmentProcessor.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/HttpResultSet.java b/src/jalview/ws/rest/HttpResultSet.java

index 5af6b32..24e9174 100644 (file)
--- a/src/jalview/ws/rest/HttpResultSet.java
+++ b/src/jalview/ws/rest/HttpResultSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/InputType.java b/src/jalview/ws/rest/InputType.java

index c3faf9d..dc4a30c 100644 (file)
--- a/src/jalview/ws/rest/InputType.java
+++ b/src/jalview/ws/rest/InputType.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/NoValidInputDataException.java b/src/jalview/ws/rest/NoValidInputDataException.java

index 69fe7f2..8236aab 100644 (file)
--- a/src/jalview/ws/rest/NoValidInputDataException.java
+++ b/src/jalview/ws/rest/NoValidInputDataException.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/RestClient.java b/src/jalview/ws/rest/RestClient.java

index 5ce1d5d..41713f1 100644 (file)
--- a/src/jalview/ws/rest/RestClient.java
+++ b/src/jalview/ws/rest/RestClient.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/RestJob.java b/src/jalview/ws/rest/RestJob.java

index c4afd0c..f080127 100644 (file)
--- a/src/jalview/ws/rest/RestJob.java
+++ b/src/jalview/ws/rest/RestJob.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/RestJobThread.java b/src/jalview/ws/rest/RestJobThread.java

index 738d5dd..951825a 100644 (file)
--- a/src/jalview/ws/rest/RestJobThread.java
+++ b/src/jalview/ws/rest/RestJobThread.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/RestServiceDescription.java b/src/jalview/ws/rest/RestServiceDescription.java

index 6f304a9..9c39b37 100644 (file)
--- a/src/jalview/ws/rest/RestServiceDescription.java
+++ b/src/jalview/ws/rest/RestServiceDescription.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/Alignment.java b/src/jalview/ws/rest/params/Alignment.java

index e6905ee..1340e34 100644 (file)
--- a/src/jalview/ws/rest/params/Alignment.java
+++ b/src/jalview/ws/rest/params/Alignment.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/AnnotationFile.java b/src/jalview/ws/rest/params/AnnotationFile.java

index 0268c35..1926791 100644 (file)
--- a/src/jalview/ws/rest/params/AnnotationFile.java
+++ b/src/jalview/ws/rest/params/AnnotationFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/JobConstant.java b/src/jalview/ws/rest/params/JobConstant.java

index 0bade86..7e8a141 100644 (file)
--- a/src/jalview/ws/rest/params/JobConstant.java
+++ b/src/jalview/ws/rest/params/JobConstant.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/SeqGroupIndexVector.java b/src/jalview/ws/rest/params/SeqGroupIndexVector.java

index 70686c5..2479e76 100644 (file)
--- a/src/jalview/ws/rest/params/SeqGroupIndexVector.java
+++ b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/SeqIdVector.java b/src/jalview/ws/rest/params/SeqIdVector.java

index cee0ce2..3dfa3c9 100644 (file)
--- a/src/jalview/ws/rest/params/SeqIdVector.java
+++ b/src/jalview/ws/rest/params/SeqIdVector.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/SeqVector.java b/src/jalview/ws/rest/params/SeqVector.java

index ff33bb5..d331de4 100644 (file)
--- a/src/jalview/ws/rest/params/SeqVector.java
+++ b/src/jalview/ws/rest/params/SeqVector.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/rest/params/Tree.java b/src/jalview/ws/rest/params/Tree.java

index 2c58ed8..5d281bd 100644 (file)
--- a/src/jalview/ws/rest/params/Tree.java
+++ b/src/jalview/ws/rest/params/Tree.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/seqfetcher/ASequenceFetcher.java b/src/jalview/ws/seqfetcher/ASequenceFetcher.java

index ba7e062..4d182cd 100644 (file)
--- a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/seqfetcher/DbSourceProxy.java b/src/jalview/ws/seqfetcher/DbSourceProxy.java

index c45a465..c6d9e94 100644 (file)
--- a/src/jalview/ws/seqfetcher/DbSourceProxy.java
+++ b/src/jalview/ws/seqfetcher/DbSourceProxy.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java b/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java

index 120f1b2..aa5f0da 100644 (file)
--- a/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
+++ b/src/jalview/ws/seqfetcher/DbSourceProxyImpl.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/jalview/ws/uimodel/AlignAnalysisUIText.java b/src/jalview/ws/uimodel/AlignAnalysisUIText.java

index d937f15..1a82396 100644 (file)
--- a/src/jalview/ws/uimodel/AlignAnalysisUIText.java
+++ b/src/jalview/ws/uimodel/AlignAnalysisUIText.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/org/jibble/epsgraphics/EpsDocument.java b/src/org/jibble/epsgraphics/EpsDocument.java

index 617542f..c739675 100755 (executable)
--- a/src/org/jibble/epsgraphics/EpsDocument.java
+++ b/src/org/jibble/epsgraphics/EpsDocument.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/org/jibble/epsgraphics/EpsException.java b/src/org/jibble/epsgraphics/EpsException.java

index 68147da..60cbd79 100755 (executable)
--- a/src/org/jibble/epsgraphics/EpsException.java
+++ b/src/org/jibble/epsgraphics/EpsException.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/org/jibble/epsgraphics/EpsGraphics2D.java b/src/org/jibble/epsgraphics/EpsGraphics2D.java

index ca1b304..e90cab1 100755 (executable)
--- a/src/org/jibble/epsgraphics/EpsGraphics2D.java
+++ b/src/org/jibble/epsgraphics/EpsGraphics2D.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/picr/model/CrossReference.java b/src/uk/ac/ebi/picr/model/CrossReference.java

index b181d55..c516ba6 100644 (file)
--- a/src/uk/ac/ebi/picr/model/CrossReference.java
+++ b/src/uk/ac/ebi/picr/model/CrossReference.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/picr/model/CrossReference_Helper.java b/src/uk/ac/ebi/picr/model/CrossReference_Helper.java

index f119d96..f58f964 100644 (file)
--- a/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
+++ b/src/uk/ac/ebi/picr/model/CrossReference_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/picr/model/UPEntry.java b/src/uk/ac/ebi/picr/model/UPEntry.java

index 6dd4a03..389d47e 100644 (file)
--- a/src/uk/ac/ebi/picr/model/UPEntry.java
+++ b/src/uk/ac/ebi/picr/model/UPEntry.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/picr/model/UPEntry_Helper.java b/src/uk/ac/ebi/picr/model/UPEntry_Helper.java

index a45d8ce..c9c2c2f 100644 (file)
--- a/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
+++ b/src/uk/ac/ebi/picr/model/UPEntry_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/Data.java b/src/uk/ac/ebi/www/Data.java

index 77e7438..2946dba 100755 (executable)
--- a/src/uk/ac/ebi/www/Data.java
+++ b/src/uk/ac/ebi/www/Data.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/InputParams.java b/src/uk/ac/ebi/www/InputParams.java

index c95ba3c..b5fa5b5 100755 (executable)
--- a/src/uk/ac/ebi/www/InputParams.java
+++ b/src/uk/ac/ebi/www/InputParams.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/WSFile.java b/src/uk/ac/ebi/www/WSFile.java

index 3a3b57e..8c56ecd 100755 (executable)
--- a/src/uk/ac/ebi/www/WSFile.java
+++ b/src/uk/ac/ebi/www/WSFile.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/WSWUBlast.java b/src/uk/ac/ebi/www/WSWUBlast.java

index 9bd24ef..6b6bf4c 100755 (executable)
--- a/src/uk/ac/ebi/www/WSWUBlast.java
+++ b/src/uk/ac/ebi/www/WSWUBlast.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/WSWUBlastService.java b/src/uk/ac/ebi/www/WSWUBlastService.java

index 1ca8782..40acf53 100755 (executable)
--- a/src/uk/ac/ebi/www/WSWUBlastService.java
+++ b/src/uk/ac/ebi/www/WSWUBlastService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java b/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java

index 2dcbe26..f27d6d8 100755 (executable)
--- a/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
+++ b/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java b/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java

index fe4e4c5..b7a0b2e 100755 (executable)
--- a/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
+++ b/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java

index 25d1fdd..4e3d516 100644 (file)
--- a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
+++ b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperBindingStub.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java

index 09cbf21..34b8de5 100644 (file)
--- a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
+++ b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperInterface.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java

index 03c3ea3..fc852e5 100644 (file)
--- a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
+++ b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java

index 855c1fe..62b0706 100644 (file)
--- a/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
+++ b/src/uk/ac/ebi/www/picr/AccessionMappingService/AccessionMapperServiceLocator.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/IMsaWS.java b/src/vamsas/IMsaWS.java

index 5012168..bcf40cf 100755 (executable)
--- a/src/vamsas/IMsaWS.java
+++ b/src/vamsas/IMsaWS.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Alignment.java b/src/vamsas/objects/simple/Alignment.java

index ad004b0..0478fa1 100755 (executable)
--- a/src/vamsas/objects/simple/Alignment.java
+++ b/src/vamsas/objects/simple/Alignment.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Alignment_Helper.java b/src/vamsas/objects/simple/Alignment_Helper.java

index a53d579..1233a50 100755 (executable)
--- a/src/vamsas/objects/simple/Alignment_Helper.java
+++ b/src/vamsas/objects/simple/Alignment_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/JpredResult.java b/src/vamsas/objects/simple/JpredResult.java

index e0d7021..9eed848 100755 (executable)
--- a/src/vamsas/objects/simple/JpredResult.java
+++ b/src/vamsas/objects/simple/JpredResult.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/JpredResult_Helper.java b/src/vamsas/objects/simple/JpredResult_Helper.java

index db902c7..41572c1 100755 (executable)
--- a/src/vamsas/objects/simple/JpredResult_Helper.java
+++ b/src/vamsas/objects/simple/JpredResult_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/MsaResult.java b/src/vamsas/objects/simple/MsaResult.java

index 99cab57..a142820 100755 (executable)
--- a/src/vamsas/objects/simple/MsaResult.java
+++ b/src/vamsas/objects/simple/MsaResult.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/MsaResult_Helper.java b/src/vamsas/objects/simple/MsaResult_Helper.java

index b607bfb..078bdc3 100755 (executable)
--- a/src/vamsas/objects/simple/MsaResult_Helper.java
+++ b/src/vamsas/objects/simple/MsaResult_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Msfalignment.java b/src/vamsas/objects/simple/Msfalignment.java

index 03cb186..1f3e152 100755 (executable)
--- a/src/vamsas/objects/simple/Msfalignment.java
+++ b/src/vamsas/objects/simple/Msfalignment.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Msfalignment_Helper.java b/src/vamsas/objects/simple/Msfalignment_Helper.java

index 547eb3d..1fdd5a6 100755 (executable)
--- a/src/vamsas/objects/simple/Msfalignment_Helper.java
+++ b/src/vamsas/objects/simple/Msfalignment_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Object.java b/src/vamsas/objects/simple/Object.java

index c66e7d3..d6fcc11 100755 (executable)
--- a/src/vamsas/objects/simple/Object.java
+++ b/src/vamsas/objects/simple/Object.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Object_Helper.java b/src/vamsas/objects/simple/Object_Helper.java

index 6c84b04..02b2484 100755 (executable)
--- a/src/vamsas/objects/simple/Object_Helper.java
+++ b/src/vamsas/objects/simple/Object_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Result.java b/src/vamsas/objects/simple/Result.java

index 7c09741..553f808 100755 (executable)
--- a/src/vamsas/objects/simple/Result.java
+++ b/src/vamsas/objects/simple/Result.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Result_Helper.java b/src/vamsas/objects/simple/Result_Helper.java

index a9a0a37..5da5537 100755 (executable)
--- a/src/vamsas/objects/simple/Result_Helper.java
+++ b/src/vamsas/objects/simple/Result_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Secstructpred.java b/src/vamsas/objects/simple/Secstructpred.java

index 9ec9294..a9bdeda 100755 (executable)
--- a/src/vamsas/objects/simple/Secstructpred.java
+++ b/src/vamsas/objects/simple/Secstructpred.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Secstructpred_Helper.java b/src/vamsas/objects/simple/Secstructpred_Helper.java

index 7980d9d..a0cbb3a 100755 (executable)
--- a/src/vamsas/objects/simple/Secstructpred_Helper.java
+++ b/src/vamsas/objects/simple/Secstructpred_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/SeqSearchResult.java b/src/vamsas/objects/simple/SeqSearchResult.java

index 6e878a3..0075416 100644 (file)
--- a/src/vamsas/objects/simple/SeqSearchResult.java
+++ b/src/vamsas/objects/simple/SeqSearchResult.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/SeqSearchResult_Helper.java b/src/vamsas/objects/simple/SeqSearchResult_Helper.java

index a4ae4b8..85ced17 100644 (file)
--- a/src/vamsas/objects/simple/SeqSearchResult_Helper.java
+++ b/src/vamsas/objects/simple/SeqSearchResult_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Sequence.java b/src/vamsas/objects/simple/Sequence.java

index 52770ad..0d7c8b9 100755 (executable)
--- a/src/vamsas/objects/simple/Sequence.java
+++ b/src/vamsas/objects/simple/Sequence.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/SequenceSet.java b/src/vamsas/objects/simple/SequenceSet.java

index d72419f..be8e36c 100755 (executable)
--- a/src/vamsas/objects/simple/SequenceSet.java
+++ b/src/vamsas/objects/simple/SequenceSet.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/SequenceSet_Helper.java b/src/vamsas/objects/simple/SequenceSet_Helper.java

index 6f6b042..a2a54ca 100755 (executable)
--- a/src/vamsas/objects/simple/SequenceSet_Helper.java
+++ b/src/vamsas/objects/simple/SequenceSet_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/Sequence_Helper.java b/src/vamsas/objects/simple/Sequence_Helper.java

index 116ae42..005c2c2 100755 (executable)
--- a/src/vamsas/objects/simple/Sequence_Helper.java
+++ b/src/vamsas/objects/simple/Sequence_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/WsJobId.java b/src/vamsas/objects/simple/WsJobId.java

index ba514f5..d032116 100755 (executable)
--- a/src/vamsas/objects/simple/WsJobId.java
+++ b/src/vamsas/objects/simple/WsJobId.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/src/vamsas/objects/simple/WsJobId_Helper.java b/src/vamsas/objects/simple/WsJobId_Helper.java

index 363189a..f30c85f 100755 (executable)
--- a/src/vamsas/objects/simple/WsJobId_Helper.java
+++ b/src/vamsas/objects/simple/WsJobId_Helper.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/analysis/AlignmentUtilsTests.java b/test/jalview/analysis/AlignmentUtilsTests.java

index 18b4252..f8b0e5b 100644 (file)
--- a/test/jalview/analysis/AlignmentUtilsTests.java
+++ b/test/jalview/analysis/AlignmentUtilsTests.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/analysis/DnaTranslation.java b/test/jalview/analysis/DnaTranslation.java

index 708ee21..682acf1 100644 (file)
--- a/test/jalview/analysis/DnaTranslation.java
+++ b/test/jalview/analysis/DnaTranslation.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/analysis/TestAlignSeq.java b/test/jalview/analysis/TestAlignSeq.java

index ca4f18d..c6a24b4 100644 (file)
--- a/test/jalview/analysis/TestAlignSeq.java
+++ b/test/jalview/analysis/TestAlignSeq.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/bin/CommandLineOperations.java b/test/jalview/bin/CommandLineOperations.java

index b86eebd..1c3714a 100644 (file)
--- a/test/jalview/bin/CommandLineOperations.java
+++ b/test/jalview/bin/CommandLineOperations.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/ext/jmol/PDBFileWithJmolTest.java b/test/jalview/ext/jmol/PDBFileWithJmolTest.java

index 7bcf902..c0643c5 100644 (file)
--- a/test/jalview/ext/jmol/PDBFileWithJmolTest.java
+++ b/test/jalview/ext/jmol/PDBFileWithJmolTest.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/ext/paradise/TestAnnotate3D.java b/test/jalview/ext/paradise/TestAnnotate3D.java

index a7c439f..9212f1a 100644 (file)
--- a/test/jalview/ext/paradise/TestAnnotate3D.java
+++ b/test/jalview/ext/paradise/TestAnnotate3D.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/gui/JAL1353bugdemo.java b/test/jalview/gui/JAL1353bugdemo.java

index 7acd843..55cf0f5 100644 (file)
--- a/test/jalview/gui/JAL1353bugdemo.java
+++ b/test/jalview/gui/JAL1353bugdemo.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/io/AnnotationFileIOTest.java b/test/jalview/io/AnnotationFileIOTest.java

index 18e008e..d09eb2a 100644 (file)
--- a/test/jalview/io/AnnotationFileIOTest.java
+++ b/test/jalview/io/AnnotationFileIOTest.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/io/FileIOTester.java b/test/jalview/io/FileIOTester.java

index 7f0e72f..926b908 100644 (file)
--- a/test/jalview/io/FileIOTester.java
+++ b/test/jalview/io/FileIOTester.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/io/Jalview2xmlTests.java b/test/jalview/io/Jalview2xmlTests.java

index 75626e9..7dcba1a 100644 (file)
--- a/test/jalview/io/Jalview2xmlTests.java
+++ b/test/jalview/io/Jalview2xmlTests.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/io/NewickFileTests.java b/test/jalview/io/NewickFileTests.java

index 07672c8..cef4180 100644 (file)
--- a/test/jalview/io/NewickFileTests.java
+++ b/test/jalview/io/NewickFileTests.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/io/RNAMLfileTest.java b/test/jalview/io/RNAMLfileTest.java

index f5b0258..45ba993 100644 (file)
--- a/test/jalview/io/RNAMLfileTest.java
+++ b/test/jalview/io/RNAMLfileTest.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java

index cf61e6e..00cbbb9 100644 (file)
--- a/test/jalview/io/StockholmFileTest.java
+++ b/test/jalview/io/StockholmFileTest.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/io/TCoffeeScoreFileTest.java b/test/jalview/io/TCoffeeScoreFileTest.java

index 2558989..09e9e8e 100644 (file)
--- a/test/jalview/io/TCoffeeScoreFileTest.java
+++ b/test/jalview/io/TCoffeeScoreFileTest.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/schemes/DnaCodonTests.java b/test/jalview/schemes/DnaCodonTests.java

index d8529f8..dc80fac 100644 (file)
--- a/test/jalview/schemes/DnaCodonTests.java
+++ b/test/jalview/schemes/DnaCodonTests.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/schemes/ScoreMatrixPrinter.java b/test/jalview/schemes/ScoreMatrixPrinter.java

index 88d234e..4265eae 100644 (file)
--- a/test/jalview/schemes/ScoreMatrixPrinter.java
+++ b/test/jalview/schemes/ScoreMatrixPrinter.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/ws/PDBSequenceFetcherTest.java b/test/jalview/ws/PDBSequenceFetcherTest.java

index 775adf7..ea5f27f 100644 (file)
--- a/test/jalview/ws/PDBSequenceFetcherTest.java
+++ b/test/jalview/ws/PDBSequenceFetcherTest.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/ws/gui/Jws2ParamView.java b/test/jalview/ws/gui/Jws2ParamView.java

index 1e72fae..125f86d 100644 (file)
--- a/test/jalview/ws/gui/Jws2ParamView.java
+++ b/test/jalview/ws/gui/Jws2ParamView.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/ws/jabaws/DisorderAnnotExportImport.java b/test/jalview/ws/jabaws/DisorderAnnotExportImport.java

index db7d505..d488b44 100644 (file)
--- a/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
+++ b/test/jalview/ws/jabaws/DisorderAnnotExportImport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java b/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java

index c206323..fb73c10 100644 (file)
--- a/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
+++ b/test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java

index f0b8f99..3c84212 100644 (file)
--- a/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
+++ b/test/jalview/ws/jabaws/JpredJabaStructExportImport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/ws/jabaws/RNAStructExportImport.java b/test/jalview/ws/jabaws/RNAStructExportImport.java

index 9a723ca..57cbd50 100644 (file)
--- a/test/jalview/ws/jabaws/RNAStructExportImport.java
+++ b/test/jalview/ws/jabaws/RNAStructExportImport.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/ws/rest/ShmmrRSBSService.java b/test/jalview/ws/rest/ShmmrRSBSService.java

index 6f111d0..7a56045 100644 (file)
--- a/test/jalview/ws/rest/ShmmrRSBSService.java
+++ b/test/jalview/ws/rest/ShmmrRSBSService.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java

index 785ca42..8a18494 100644 (file)
--- a/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
+++ b/test/jalview/ws/seqfetcher/DbRefFetcherTest.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/InstallAnywhere/jalview_buildinstaller.xml b/utils/InstallAnywhere/jalview_buildinstaller.xml

index de1e865..26ad796 100644 (file)
--- a/utils/InstallAnywhere/jalview_buildinstaller.xml
+++ b/utils/InstallAnywhere/jalview_buildinstaller.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/eclipse/JalviewCodeStyle.xml b/utils/eclipse/JalviewCodeStyle.xml

index fc961f7..cf492dd 100644 (file)
--- a/utils/eclipse/JalviewCodeStyle.xml
+++ b/utils/eclipse/JalviewCodeStyle.xml
@@ -1,6 +1,6 @@
  <?xml version="1.0" encoding="UTF-8" standalone="no"?>
  <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/getJavaVersion.java b/utils/getJavaVersion.java

index de27673..a525b3f 100644 (file)
--- a/utils/getJavaVersion.java
+++ b/utils/getJavaVersion.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/gff2annot.pl b/utils/gff2annot.pl

index 40fe25f..59ee580 100755 (executable)
--- a/utils/gff2annot.pl
+++ b/utils/gff2annot.pl
@@ -1,6 +1,6 @@
  #!/usr/bin/perl
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/utils/help2Website.java b/utils/help2Website.java

index ef174c4..d3d6692 100755 (executable)
--- a/utils/help2Website.java
+++ b/utils/help2Website.java
@@ -1,5 +1,5 @@
  /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
   * Copyright (C) 2014 The Jalview Authors
   * 
   * This file is part of Jalview.
diff --git a/utils/jarunsigner.pl b/utils/jarunsigner.pl

index 53e0413..1d37502 100755 (executable)
--- a/utils/jarunsigner.pl
+++ b/utils/jarunsigner.pl
@@ -1,6 +1,6 @@
  #!/usr/bin/perl
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/utils/patchGt.pl b/utils/patchGt.pl

index ef7b4db..a4e7439 100644 (file)
--- a/utils/patchGt.pl
+++ b/utils/patchGt.pl
@@ -1,6 +1,6 @@
  #!/bin/perl
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
diff --git a/utils/splitstockholm.pl b/utils/splitstockholm.pl

index 76ff05b..f78a55a 100644 (file)
--- a/utils/splitstockholm.pl
+++ b/utils/splitstockholm.pl
@@ -1,6 +1,6 @@
  #!/usr/bin/perl
  ##
-# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  # Copyright (C) 2014 The Jalview Authors
  # 
  # This file is part of Jalview.
author	Jim Procter <jprocter@dundee.ac.uk>
	Mon, 15 Dec 2014 06:34:15 +0000 (06:34 +0000)
committer	Jim Procter <jprocter@dundee.ac.uk>
	Mon, 15 Dec 2014 06:34:15 +0000 (06:34 +0000)