Merge branch 'patch/Release_2_11_1_Branch_patch_JAL-3490' into releases/Release_2_11_...

diff --cc resources/lang/Messages.properties
index ec1ef88,43bc19d..496fad0
--- 1/resources/lang/Messages.properties
--- 2/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@@ -1412,7 -1412,6 +1412,9 @@@ label.include_linked_features = Includ
  label.include_linked_tooltip = Include visible {0} features<br>converted to local sequence coordinates
  label.features_not_shown = {0} feature(s) not shown
  label.no_features_to_sort_by = No features to sort by
 +label.log_level = Log level
 +label.log_level_tooltip = Temporarily set the log level for this console. The log level will revert to {0} when this Java console is closed.
 +label.copy_to_clipboard = Copy to clipboard
 +label.copy_to_clipboard_tooltip = Copy all of the log text in this console to the system clipboard
+ label.ignore_hidden = Ignore hidden columns
+ label.ignore_hidden_tooltip = Ignore any characters in hidden columns when matching
 -

diff --cc resources/lang/Messages_es.properties
index 6bb9a21,f0989e1..6364f5e
--- 1/resources/lang/Messages_es.properties
--- 2/resources/lang/Messages_es.properties
+++ b/resources/lang/Messages_es.properties
@@@ -1413,7 -1407,5 +1413,9 @@@ label.include_linked_features = Inclui
  label.include_linked_tooltip = Incluir características de {0}<br>convertidas a coordenadas de secuencia local
  label.features_not_shown = {0} característica(s) no mostradas
  label.no_features_to_sort_by = No hay características para ordenar
 +label.log_level = Nivel del registro
 +label.log_level_tooltip = Establezca temporalmente el nivel de registro para esta consola. El nivel de registro volverá a {0} cuando se cierre esta consola de Java.
 +label.copy_to_clipboard = Copiar en el portapapeles
 +label.copy_to_clipboard_tooltip = Copie todo el texto de registro en esta consola al portapapeles del sistema
+ label.ignore_hidden = Ignorar columnas ocultas
+ label.ignore_hidden_tooltip = Ignorar caracteres en columnas ocultas

diff --cc src/jalview/gui/AlignFrame.java
Simple merge

diff --cc src/jalview/gui/AnnotationColumnChooser.java
Simple merge

diff --cc src/jalview/gui/SeqPanel.java
Simple merge

diff --cc src/jalview/viewmodel/AlignmentViewport.java
Simple merge