From: Jim Procter Date: Tue, 16 May 2017 12:46:14 +0000 (+0100) Subject: JAL-2418 release 2.10.2 release notes template X-Git-Tag: Release_2_10_2~3^2~83^2~6 X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=09b25d3dc80f74c0fae97e27fd394417917f3906 JAL-2418 release 2.10.2 release notes template --- diff --git a/help/help.jhm b/help/help.jhm index ac8fc3f..53b86d2 100755 --- a/help/help.jhm +++ b/help/help.jhm @@ -22,7 +22,7 @@ - + diff --git a/help/html/releases.html b/help/html/releases.html index aa589e9..ecdcb84 100755 --- a/help/html/releases.html +++ b/help/html/releases.html @@ -70,6 +70,45 @@ li:before {
+ 2.10.2
+ 30/5/2017 +
+ +
+ General +
    +
  • +
+ Application +
    +
  • +
+ Applet +
    +
  • +
+
+ General +
    +
  • +
+ Application +
    +
  • +
+ Applet +
    +
  • +
+ New Known Issues +
    +
  • +
+ +
+ + +
2.10.1
29/11/2016
diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index d1d141d..c5859ea 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -24,55 +24,13 @@

- What's new in Jalview 2.10.1 ? + What's new in Jalview 2.10.2 ?

- Jalview 2.10.1 was released on 29th November 2016. Full details are - in the Jalview 2.10.1 - Release Notes, but the highlights are below. This is also the - first release to include contributions from Kira Mourão, who - joined Jalview's core development team in October 2016. -

+ Full details about Jalview 2.10.2 are in the + Release Notes, but the highlights are below.

    -
  • More memory efficient
    We've slimmed - down the consensus analysis data structures used by Jalview so - even wider alignments can be worked with.
    • -
  • Select highlighted region
    Press 'B' - or use the new menu option in the alignment window's Select menu - to mark columns containing highlighted regions generated from - structure selections, mouse-overs, or resulting from a Find - operation.
    • -
  • New custom link mechanism for opening URLs - for database cross references.
    If you have customised URL - links in your Jalview preferences, then you may already have seen - the warning dialog (see below).
    • -
  • New command line export option for BioJS - MSAviewer
    A number of small bugs with the HTML export - functions from the Jalview desktop were also fixed.
    • -
  • Small but significant changes to the - physicochemical properties and consensus calculations
    Threonine - is no longer considered a non-hydrophobic residue in the protein - conservation calculation, and minor bugs addressed in PID and - consensus colouring.
    • -
  • Correct display of disulphide bond - features
    In linked structure views, Jalview would - highlight all residues between in addition to the two linked - cysteines. The 'select columns by feature' function in the feature - settings would also select all intermediate columns.
-

- Warning dialog about updating - your configured URL links
In the desktop prior to Jalview - 2.10.1, the only way to configure custom links for a particular - database cross-reference for a sequence was to give it a name that exactly - matched the database source, and a regular expression for filtering - out any spurious matches generated when the custom linked was tested - against the Sequence's ID string. Since the introduction of the - $DB_ACCESSION$ token, however, $SEQUENCE_ID$ will not be used for - database cross-reference accession strings, and if you have custom - links configured, Jalview will raise a warning message so let you - know that you may need to update your links to use $DB_ACCESSION$. -