From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 26 Jun 2019 17:07:41 +0000 (+0100)
Subject: JAL-3111 release notes for JAL-3334 JAL-3330 and rejig others
X-Git-Tag: Release_2_11_0~4^2
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=0b12a422e934483b9f9639405f8818292af6947f;hp=b452ce8cbe93ca6d4c2a7c489cac9105eee637d8

JAL-3111 release notes for JAL-3334 JAL-3330 and rejig others
---

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index b9b1b67..9b71968 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,7 +57,7 @@ li:before {
     </tr>
     <tr>
       <td width="60" align="center" nowrap>
-          <strong><a name="Jalview.2.11">2.11</a><br />
+          <strong><a name="Jalview.2.11.0">2.11.0</a><br />
             <em>27/06/2019</em></strong>
       </td>
       <td align="left" valign="top">
@@ -98,7 +98,7 @@ li:before {
 						<ul>
 						          <li>
             <!-- JAL-3140 JAL-2446 -->IntervalStoreJ (NCList
-            implementation that alows updates) used for Sequence Feature collections</li>
+            implementation that allows updates) used for Sequence Feature collections</li>
           <li>
 							<li>
 								<!-- JAL-2808,JAL-2069 -->Sequence features can be filtered and
@@ -107,6 +107,10 @@ li:before {
 								column 9 of GFF file)
 							</li>
 							<li>
+								<!-- JAL-3334 -->Use full Sequence Ontology (via BioJava) to
+								recognise variant features
+							</li>
+							<li>
 								<!-- JAL-2897 -->Show synonymous codon variants on peptide
 								sequences
 							</li>
@@ -325,6 +329,15 @@ li:before {
 						score from view
 					</li>
 					<li>
+						<!-- JAL-3330 -->Sequence Variants retrieved from Ensembl during
+						show cross references or Fetch Database References are shown in
+						red in original view
+					</li>
+          <li>
+            <!-- JAL-2898 -->stop_gained variants not shown correctly on
+            peptide sequence
+          </li>
+					<li>
 						<!-- JAL-2060 -->'Graduated colour' option not offered for
 						manually created features (where if feature score is Float.NaN)
 					</li>
@@ -409,10 +422,6 @@ li:before {
 						shown in complementary view
 					</li>
 					<li>
-						<!-- JAL-2898 -->stop_gained variants not shown correctly on
-						peptide sequence
-					</li>
-					<li>
 						<!-- JAL-3313 -->Codon consensus incorrectly scaled when shown
 						without normalisation
 					</li>