From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Wed, 16 Sep 2015 09:26:54 +0000 (+0100)
Subject: JAL-1859 revert to resolving full path to PDB file
X-Git-Tag: Release_2_10_0~409
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=15335b83310784537f6c1b9c20d2c1ea2f57bcfc

JAL-1859 revert to resolving full path to PDB file
---

diff --git a/src/jalview/javascript/MouseOverStructureListener.java b/src/jalview/javascript/MouseOverStructureListener.java
index 7f833e7..176c881 100644
--- a/src/jalview/javascript/MouseOverStructureListener.java
+++ b/src/jalview/javascript/MouseOverStructureListener.java
@@ -90,14 +90,13 @@ public class MouseOverStructureListener extends JSFunctionExec implements
     {
       for (int i = 0; i < modelSet.length; i++)
       {
-        // ? leave file names 'as is' to match StructureMapping.pdbfile
-        // modelSet[i] = resolveModelFile(modelSet[i]);
+        modelSet[i] = resolveModelFile(modelSet[i]);
       }
     }
   }
 
   /**
-   * Returns the first out of file, file prefixed by document base, or file
+   * Returns the first out of: file, file prefixed by document base, or file
    * prefixed by codebase which can be resolved to a valid URL. If none can,
    * returns the input parameter value.
    * 
@@ -105,6 +104,7 @@ public class MouseOverStructureListener extends JSFunctionExec implements
    */
   public String resolveModelFile(String file)
   {
+    // TODO reuse JalviewLite.LoadingThread.addProtocol instead
     if (isValidUrl(file))
     {
       return file;