From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Wed, 11 Mar 2015 08:45:01 +0000 (+0000)
Subject: JAL-845 handle no profile without NPE!
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=15f308b25f41681924975f6e4c7d564ebe31263e

JAL-845 handle no profile without NPE!
---

diff --git a/src/jalview/renderer/AnnotationRenderer.java b/src/jalview/renderer/AnnotationRenderer.java
index 2e40416..1d1010f 100644
--- a/src/jalview/renderer/AnnotationRenderer.java
+++ b/src/jalview/renderer/AnnotationRenderer.java
@@ -1335,12 +1335,11 @@ public class AnnotationRenderer
          */
         int profl[] = getProfileFor(_aa, column);
 
-        boolean isStructureProfile = profl[0] == AlignmentAnnotation.STRUCTURE_PROFILE;
-        boolean isCdnaProfile = profl[0] == AlignmentAnnotation.CDNA_PROFILE;
-
         // just try to draw the logo if profl is not null
         if (profl != null && profl[2] != 0)
         {
+          boolean isStructureProfile = profl[0] == AlignmentAnnotation.STRUCTURE_PROFILE;
+          boolean isCdnaProfile = profl[0] == AlignmentAnnotation.CDNA_PROFILE;
           float ht = normaliseProfile ? y - _aa.graphHeight : y1;
           double htn = normaliseProfile ? _aa.graphHeight : (y2 - y1);// aa.graphHeight;
           double hght;