From: kiramt <k.mourao@dundee.ac.uk>
Date: Thu, 16 Nov 2017 11:57:15 +0000 (+0000)
Subject: JAL-2831 Removed unwanted hidden sequences checks
X-Git-Tag: Release_2_10_3b1~28^2
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=195b605509007fa22622c277eb106ae6e994bfb0;ds=sidebyside

JAL-2831 Removed unwanted hidden sequences checks
---

diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java
index 36ae682..d5c4a56 100755
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -1266,12 +1266,10 @@ public class SeqCanvas extends JComponent implements ViewportListenerI
           int endSeq)
   {
     // convert the cursorY into a position on the visible alignment
-    int cursor_ypos = av.getAlignment().getHiddenSequences()
-            .findIndexWithoutHiddenSeqs(cursorY);
+    int cursor_ypos = cursorY;
 
     // don't do work unless we have to
-    if (!av.getAlignment().getHiddenSequences().isHidden(cursorY)
-            && cursor_ypos >= startSeq && cursor_ypos <= endSeq)
+    if (cursor_ypos >= startSeq && cursor_ypos <= endSeq)
     {
       int yoffset = 0;
       int xoffset = 0;
diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 2958f9d..e11af48 100644
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -428,9 +428,7 @@ public class SeqPanel extends JPanel
       }
     }
 
-    if (!av.getAlignment().getHiddenSequences().isHidden(seqCanvas.cursorY)
-            && av.getAlignment().getHiddenColumns()
-                    .isVisible(seqCanvas.cursorX))
+    if (av.getAlignment().getHiddenColumns().isVisible(seqCanvas.cursorX))
     {
       setStatusMessage(av.getAlignment().getSequenceAt(seqCanvas.cursorY),
             seqCanvas.cursorX, seqCanvas.cursorY);