From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 25 Nov 2005 17:57:57 +0000 (+0000)
Subject: Must follow alignmentPosition
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=284bf925b630de7591d7ecdece5d71f8dc330497

Must follow alignmentPosition
---

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index e95ca02..460c6d1 100755
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -91,6 +91,8 @@ public class SequenceRenderer
 
       allGroups = av.alignment.findAllGroups(seq);
 
+      i = seq.findIndex(i);
+
       drawBoxes(seq, i,i, 0, 0, 1,1);
 
       return new Color(bi.getRGB(0, 0));