From: Jim Procter <j.procter@dundee.ac.uk>
Date: Mon, 8 Nov 2021 18:18:28 +0000 (+0000)
Subject: JAL-3855 try harder to ignore DNA/RNA only structures when deciding whether to downlo... 
X-Git-Tag: Release_2_11_2_0~22^2~2
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=4cb019313997567611211b0885faa3f01c7e5ecc

JAL-3855 try harder to ignore DNA/RNA only structures when deciding whether to download from SIFTS
---

diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java
index 1fcbbf5..ad57831 100644
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -413,7 +413,14 @@ public class StructureSelectionManager
       // TODO: JAL-3868 need to know if structure is actually from 
       // PDB (has valid PDB ID and has provenance suggesting it 
       // actually came from PDB)
-      isMapUsingSIFTs = isMapUsingSIFTs && pdb.isPPDBIdAvailable() && !pdb.getId().startsWith("AF-");
+      boolean isProtein = false;
+      for (SequenceI s:sequenceArray) {
+        if (s.isProtein()) {
+          isProtein = true;
+          break;
+        }
+      }
+      isMapUsingSIFTs = isMapUsingSIFTs && pdb.isPPDBIdAvailable() && !pdb.getId().startsWith("AF-") && isProtein;
 
     } catch (Exception ex)
     {