From: Jim Procter <j.procter@dundee.ac.uk>
Date: Fri, 7 Oct 2022 14:19:54 +0000 (+0100)
Subject: Merge branch 'develop' into releases/Release_2_11_2_Branch
X-Git-Tag: Release_2_11_2_5~6
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=53c0221021c8328cac903a3f8dce7a806cbc4095;hp=a6eb3a3acc83c1670700dd2da39a815dfecab7e3

Merge branch 'develop' into releases/Release_2_11_2_Branch
---

diff --git a/src/jalview/ws/dbsources/Pfam.java b/src/jalview/ws/dbsources/Pfam.java
index 93001a4..26c907c 100644
--- a/src/jalview/ws/dbsources/Pfam.java
+++ b/src/jalview/ws/dbsources/Pfam.java
@@ -39,7 +39,7 @@ import jalview.util.Platform;
 abstract public class Pfam extends Xfam
 {
   public static final String FULL = "full", RP35 = "rp35", RP15 = "rp15",
-          RP75 = "rp75", RP55 = "rp55", SEED = "seed";
+          RP75 = "rp75", RP55 = "rp55", SEED = "seed", UNIPROT = "uniprot";
 
   public String getPfamDownloadURL(String id, String alType)
   {
@@ -53,7 +53,10 @@ abstract public class Pfam extends Xfam
 
   protected String alignmentType;
 
-  private static final String DEFAULT_PFAM_BASEURL = "https://www.ebi.ac.uk/interpro/wwwapi/entry/pfam/$PFAMID$/?annotation=alignment:$ALTYPE$&download";
+  /**
+   * docs are http://www.ebi.ac.uk/interpro/api/
+   */
+  private static final String DEFAULT_PFAM_BASEURL = "www.ebi.ac.uk/interpro/api/entry/pfam/$PFAMID$/?annotation=alignment:$ALTYPE";
 
   static
   {