From: kiramt <k.mourao@dundee.ac.uk>
Date: Fri, 2 Jun 2017 13:00:13 +0000 (+0100)
Subject: JAL-2577 Don't allow viewport ranges below 0. Unit tests updated.
X-Git-Tag: Release_2_10_2~3^2~42^2
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=736a572a7f2ef47988a37d01992ff03045bfdb24

JAL-2577 Don't allow viewport ranges below 0. Unit tests updated.
---

diff --git a/src/jalview/viewmodel/ViewportRanges.java b/src/jalview/viewmodel/ViewportRanges.java
index 743d212..4eb8c95 100644
--- a/src/jalview/viewmodel/ViewportRanges.java
+++ b/src/jalview/viewmodel/ViewportRanges.java
@@ -123,7 +123,7 @@ public class ViewportRanges extends ViewportProperties
     int oldstartres = this.startRes;
     if (start > getVisibleAlignmentWidth() - 1)
     {
-      startRes = getVisibleAlignmentWidth() - 1;
+      startRes = Math.max(getVisibleAlignmentWidth() - 1, 0);
     }
     else if (start < 0)
     {
@@ -141,7 +141,7 @@ public class ViewportRanges extends ViewportProperties
     }
     else if (end > getVisibleAlignmentWidth() - 1)
     {
-      endRes = getVisibleAlignmentWidth() - 1;
+      endRes = Math.max(getVisibleAlignmentWidth() - 1, 0);
     }
     else
     {
@@ -208,7 +208,7 @@ public class ViewportRanges extends ViewportProperties
     int oldstartseq = this.startSeq;
     if (start > getVisibleAlignmentHeight() - 1)
     {
-      startSeq = getVisibleAlignmentHeight() - 1;
+      startSeq = Math.max(getVisibleAlignmentHeight() - 1, 0);
     }
     else if (start < 0)
     {
@@ -222,7 +222,7 @@ public class ViewportRanges extends ViewportProperties
     int oldendseq = this.endSeq;
     if (end >= getVisibleAlignmentHeight())
     {
-      endSeq = getVisibleAlignmentHeight() - 1;
+      endSeq = Math.max(getVisibleAlignmentHeight() - 1, 0);
     }
     else if (end < 0)
     {
diff --git a/test/jalview/viewmodel/ViewportRangesTest.java b/test/jalview/viewmodel/ViewportRangesTest.java
index 80bd4db..3ed02d7 100644
--- a/test/jalview/viewmodel/ViewportRangesTest.java
+++ b/test/jalview/viewmodel/ViewportRangesTest.java
@@ -31,6 +31,8 @@ public class ViewportRangesTest {
     ColumnSelection sel = new ColumnSelection();
     al.getHiddenColumns().revealAllHiddenColumns(sel);
     al.getHiddenSequences().showAll(null);
+    smallAl.getHiddenColumns().revealAllHiddenColumns(sel);
+    smallAl.getHiddenSequences().showAll(null);
   }
 
   @Test(groups = { "Functional" })
@@ -133,6 +135,12 @@ public class ViewportRangesTest {
     ViewportRanges vrsmall = new ViewportRanges(smallAl);
     vrsmall.setStartEndRes(al.getWidth(), al.getWidth());
     assertEquals(vrsmall.getEndRes(), 6);
+
+    // make visible alignment width = 0
+    smallAl.getHiddenColumns().hideColumns(0, 6);
+    vrsmall.setStartEndRes(0, 4);
+    assertEquals(vrsmall.getStartRes(), 0);
+    assertEquals(vrsmall.getEndRes(), 0);
   }
 
   @Test(groups = { "Functional" })
@@ -149,6 +157,14 @@ public class ViewportRangesTest {
 
     vr.setStartEndSeq(al.getHeight(), al.getHeight());
     assertEquals(vr.getEndSeq(), al.getHeight() - 1);
+
+    // make visible alignment height = 0
+    smallAl.getHiddenSequences().hideSequence(smallAl.getSequenceAt(0));
+    smallAl.getHiddenSequences().hideSequence(smallAl.getSequenceAt(0));
+    ViewportRanges vrsmall = new ViewportRanges(smallAl);
+    vrsmall.setStartEndSeq(0, 3);
+    assertEquals(vrsmall.getStartSeq(), 0);
+    assertEquals(vrsmall.getEndSeq(), 0);
   }
 
   @Test(groups = { "Functional" })