From: kiramt <k.mourao@dundee.ac.uk>
Date: Mon, 15 Jan 2018 16:27:22 +0000 (+0000)
Subject: JAL-2759 More compact iterator usage; after review
X-Git-Tag: Release_2_10_4~55^2~1^2~36
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=8874aa9fd956f7bc248fe15a669a6d8d81d6891b

JAL-2759 More compact iterator usage; after review
---

diff --git a/src/jalview/datamodel/HiddenColumns.java b/src/jalview/datamodel/HiddenColumns.java
index 718f64e..6677151 100644
--- a/src/jalview/datamodel/HiddenColumns.java
+++ b/src/jalview/datamodel/HiddenColumns.java
@@ -325,10 +325,8 @@ public class HiddenColumns
     {
       LOCK.writeLock().lock();
 
-      Iterator<int[]> it = hiddenColumns.iterator();
-      while (it.hasNext())
+      for (int[] region : hiddenColumns)
       {
-        int[] region = it.next();
         for (int j = region[0]; j < region[1] + 1; j++)
         {
           sel.addElement(j);
@@ -460,17 +458,15 @@ public class HiddenColumns
       // insert gaps corresponding to each hidden region but where each hidden
       // column region is shifted backwards by the number of preceding visible
       // gaps update hidden columns at the same time
-      Iterator<int[]> regions = hiddenColumns.iterator();
       List<int[]> newhidden = new ArrayList<>();
 
       int numGapsBefore = 0;
       int gapPosition = 0;
-      while (regions.hasNext())
+      for (int[] region : hiddenColumns)
       {
         // get region coordinates accounting for gaps
         // we can rely on gaps not being *in* hidden regions because we already
         // removed those
-        int[] region = regions.next();
         while (gapPosition < region[0])
         {
           gapPosition++;
@@ -580,16 +576,19 @@ public class HiddenColumns
       LOCK.readLock().lock();
       StringBuilder regionBuilder = new StringBuilder();
 
-      Iterator<int[]> it = hiddenColumns.iterator();
-      while (it.hasNext())
+      boolean first = true;
+      for (int[] range : hiddenColumns)
       {
-        int[] range = it.next();
-        regionBuilder.append(delimiter).append(range[0]).append(between)
-                .append(range[1]);
-        if (!it.hasNext())
+        if (!first)
         {
-          regionBuilder.deleteCharAt(0);
+          regionBuilder.append(delimiter);
         }
+        else
+        {
+          first = false;
+        }
+        regionBuilder.append(range[0]).append(between).append(range[1]);
+
       }
 
       return regionBuilder.toString();
@@ -615,10 +614,8 @@ public class HiddenColumns
         // numColumns is out of date, so recalculate
         int size = 0;
 
-        Iterator<int[]> it = hiddenColumns.iterator();
-        while (it.hasNext())
+        for (int[] range : hiddenColumns)
         {
-          int[] range = it.next();
           size += range[1] - range[0] + 1;
         }
 
@@ -676,11 +673,9 @@ public class HiddenColumns
         return false;
       }
 
-      Iterator<int[]> it = hiddenColumns.iterator();
       Iterator<int[]> thatit = that.iterator();
-      while (it.hasNext())
+      for (int[] thisRange : hiddenColumns)
       {
-        int[] thisRange = it.next();
         int[] thatRange = thatit.next();
         if (thisRange[0] != thatRange[0] || thisRange[1] != thatRange[1])
         {
@@ -1223,10 +1218,8 @@ public class HiddenColumns
     {
       LOCK.readLock().lock();
       int hashCode = 1;
-      Iterator<int[]> it = hiddenColumns.iterator();
-      while (it.hasNext())
+      for (int[] hidden : hiddenColumns)
       {
-        int[] hidden = it.next();
         hashCode = HASH_MULTIPLIER * hashCode + hidden[0];
         hashCode = HASH_MULTIPLIER * hashCode + hidden[1];
       }
@@ -1274,10 +1267,8 @@ public class HiddenColumns
     {
       LOCK.readLock().lock();
 
-      Iterator<int[]> it = hiddenColumns.iterator();
-      while (it.hasNext())
+      for (int[] range : hiddenColumns)
       {
-        int[] range = it.next();
         inserts.set(range[0], range[1] + 1);
       }
     } finally
@@ -1310,10 +1301,8 @@ public class HiddenColumns
         return new int[] { startPos, endPos };
       }
 
-      Iterator<int[]> it = hiddenColumns.iterator();
-      while (it.hasNext())
+      for (int[] range : hiddenColumns)
       {
-        int[] range = it.next();
         lowestRange = (range[0] <= startPos) ? range : lowestRange;
         higestRange = (range[1] >= endPos) ? range : higestRange;
       }