From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 27 Oct 2015 12:17:25 +0000 (+0000)
Subject: JAL-666 patch JAL-1947 in applet where overview is under sampled when lost of sequenc... 
X-Git-Tag: Release_2_10_0~138^2~1
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=9919492cbc1ac36f773b826f38df46a8fe888f46

JAL-666 patch JAL-1947 in applet where overview is under sampled when lost of sequences are hidden in the viewport (hangover from applet not supporting hidden rows)
---

diff --git a/src/jalview/appletgui/OverviewPanel.java b/src/jalview/appletgui/OverviewPanel.java
index bc64728..5a1243a 100755
--- a/src/jalview/appletgui/OverviewPanel.java
+++ b/src/jalview/appletgui/OverviewPanel.java
@@ -265,7 +265,8 @@ public class OverviewPanel extends Panel implements Runnable,
   {
     miniMe = null;
     int alwidth = av.getAlignment().getWidth();
-    int alheight = av.getAlignment().getHeight();
+    int alheight = av.getAlignment().getHeight()
+            + av.getAlignment().getHiddenSequences().getSize();
 
     if (av.isShowSequenceFeatures())
     {