From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Mon, 17 Jun 2013 14:14:40 +0000 (+0100)
Subject: JAL-1312 patch for regression noticed after patch to jalview.analysis.Dna cdna transl... 
X-Git-Tag: Jalview_2_9~240^2~4
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=9994d975a619f3718027a9002bb35d67c24e7ffb;ds=sidebyside

JAL-1312 patch for regression noticed after patch to jalview.analysis.Dna cdna translation
---

diff --git a/src/jalview/datamodel/AlignedCodonFrame.java b/src/jalview/datamodel/AlignedCodonFrame.java
index 48b3346..6215a93 100644
--- a/src/jalview/datamodel/AlignedCodonFrame.java
+++ b/src/jalview/datamodel/AlignedCodonFrame.java
@@ -120,7 +120,7 @@ public class AlignedCodonFrame
     if (aspos < aaWidth)
     {
       aaWidth++;
-      System.arraycopy(codons, aspos, codons, aspos + 1, aaWidth - aspos);
+      System.arraycopy(codons, aspos, codons, aspos + 1, codons.length - aspos - 1);
       codons[aspos] = null; // clear so new codon position can be marked.
     }
   }