From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 25 Nov 2005 17:57:01 +0000 (+0000)
Subject: -1 adjust
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=9e522ae1ef33cc744fe359f76f3c62056c8daf6f

-1 adjust
---

diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index 3f3bab1..0e6f1bd 100755
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -433,12 +433,12 @@ public class AlignSeq
             }
         }
 
-       /* for(int i=0; i<mapping.length; i++)
+      /*  for(int i=0; i<mapping.length; i++)
         {
           if(mapping[i]!=-1)
             System.out.println(i+" "+s2.getCharAt(i) + " " + mapping[i] + " " +
                                s1.findIndex(mapping[i])+" "+
-                               s1.getCharAt(s1.findIndex(mapping[i])-1));
+                               s1.getCharAt(s1.findIndex(mapping[i])));
           else
             System.out.println(i+" "+"XX"+s2.getCharAt(i));
         }*/