From: Jim Procter Date: Wed, 8 Jun 2022 13:42:48 +0000 (+0100) Subject: JAL-4004 delete temporary file mistakenly checked in X-Git-Tag: Release_2_11_2_6~63 X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=a1b8a79115a0ecf10ba395ec2dc8cf12c7063924 JAL-4004 delete temporary file mistakenly checked in --- diff --git a/help/markdown/releases/temp b/help/markdown/releases/temp deleted file mode 100644 index 52487e0..0000000 --- a/help/markdown/releases/temp +++ /dev/null @@ -1,41 +0,0 @@ ---- -channel: release -version: 2.10.5 -date: 2018-09-10 ---- - -## New Features - - - - - Default memory for Jalview webstart and InstallAnywhere increased to 1G. - - Hidden sequence markers and representative sequence bolding included when exporting alignment as EPS, SVG, PNG or HTML. *Display is configured via the Format menu, or for command-line use via a Jalview properties file.* - - Ensembl client updated to Version 7 REST API and sequence data now imported as JSON. - - Change in recommended way of starting Jalview via a Java command line: add jars in lib directory to CLASSPATH, rather than via the deprecated java.ext.dirs property. - - -### Development - - Support added to execute test suite instrumented with [Open Clover](http://openclover.org/) - - -## Issues Resolved - - - - - Poorly scaled bar in quality annotation row shown in Feredoxin Structure alignment view of example alignment. - - Annotation obscures sequences if lots of annotation displayed. - - Group conservation/consensus not shown for newly created group when 'Apply to all groups' selected - - Corrupted display when switching to wrapped mode when sequence panel's vertical scrollbar is visible. - - Alignment is black in exported EPS file when sequences are selected in exported view. - - Groups with different coloured borders aren't rendered with correct colour. - - Jalview could hang when importing certain types of knotted RNA secondary structure. - - Sequence highlight and selection in trimmed VARNA 2D structure is incorrect for sequences that do not start at 1. - - '.' inserted into RNA secondary structure annotation when columns are inserted into an alignment, and when exporting as Stockholm flatfile. - - Jalview annotation rows containing upper and lower-case 'E' and 'H' do not automatically get treated as RNA secondary structure. - - .jvp should be used as default extension (not .jar) when saving a Jalview project file. - - Mac Users: closing a window correctly transfers focus to previous window on OSX - - -### Java 10 Issues Resolved - - OSX - Can't save new files via the File or export menus by typing in a name into the Save dialog box. - - Jalview now uses patched version of the [VAqua5](https://violetlib.org/vaqua/overview.html) 'look and feel' which has improved compatibility with the latest version of OSX.