From: hansonr <hansonr@STO24954W.ad.stolaf.edu>
Date: Tue, 27 Aug 2019 03:13:27 +0000 (-0500)
Subject: developer note pnly
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=a94a9652cff4b0dddcf2c0128ed79cc3e2d40324

developer note pnly

   *
   * BH Note: It is critical that any call to
   * AlignViewportI.setGlobalColourScheme is followed closely, if not
   * immediately, by a call to AlignPanel.repaint(true, true) so that
the
   * overview is updated. When that happens, the sequence overview color
caches
   * are cleared.
   *
---

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index dcd3258..cec61f4 100644
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -200,6 +200,12 @@ public interface AlignViewportI extends ViewStyleI
    * sub-groups, which may have their own colour schemes). A null value is used
    * for no residue colour (white).
    * 
+   * BH Note: It is critical that any call to
+   * AlignViewportI.setGlobalColourScheme is followed closely, if not
+   * immediately, by a call to AlignPanel.repaint(true, true) so that the
+   * overview is updated. When that happens, the sequence overview color caches
+   * are cleared.
+   * 
    * @param cs
    */
   void setGlobalColourScheme(ColourSchemeI cs);