From: James Procter Date: Thu, 2 Nov 2023 18:43:42 +0000 (+0000) Subject: JAL-4090 update release date to friday 3rd November X-Git-Tag: Release_2_11_3_0~3^2~12 X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=bc7ebbb58133e64e7a77cb83eef8e2df75faec03 JAL-4090 update release date to friday 3rd November Release notes for JAL-4252 JAL-3858 JAL-2292 JAL-4288 JAL-4151 --- diff --git a/help/markdown/releases/release-2_11_3_0.md b/help/markdown/releases/release-2_11_3_0.md index 190065a..e527792 100644 --- a/help/markdown/releases/release-2_11_3_0.md +++ b/help/markdown/releases/release-2_11_3_0.md @@ -1,6 +1,6 @@ --- version: 2.11.3.0 -date: 2023-10-25 +date: 2023-11-03 channel: "release" --- @@ -18,13 +18,14 @@ channel: "release" - sequence descriptions are updated from database reference sources if not already defined - Visible adjuster marks to grab and adjust annotation panel height and id width - Adjustable ID margin when alignment is wrapped -- Command line options and configurable bitmap export preferences for height, width and scale factor +- Command line options and configurable bitmap export (via preferences file) for height, width and scale factor - Show or hide ligands in a Jmol structure view via View Ligands submenu +- Jmol's display is antialiased by default (smoother, less pixellated) ### Improved support for working with structures and computationally determined models - Alphafold red/orange/yellow/green colourscheme for structures - Interactive picking of low pAE score regions -- contact matrix datatype in Jalview +- Predicted Alignment Error annotation tracks for structures from AlphaFold DB - Selections with visual feedback via contact matrix annotation - Discover and import alphafold2 models and metadata from https://alphafold.ebi.ac.uk/ - Visual indication of relationship with associated sequence to distinguish different sequence associated annotation rows @@ -69,6 +70,7 @@ channel: "release" - Create separate gradle test task for some tests - Prevent gradle test on macOS continuously grabbing focus - Allow gradle build to create suffixed DEVELOP-... builds with channel appbase +- Update .jvl generation in build.gradle for jalview branch builds - Jalview bio.tools description maintained under jalview's git repo and bundled with source release - Output stderr and stdout when running tests via gradle - New gradle task providing runtime acceptance test for JalviewJS based on Chromium for Tests (still work in progress) @@ -117,6 +119,6 @@ channel: "release" - Test coverage for ID width adjustment disabled pending fix for new annotation label geometry and width calculation - scripts adding new fileformats or colourschemes do not work when run via command line - Headless alignment export with structure annotations doesn't include secondary structure and temperature factor - +- Copy sequences from one alignment and Pasting as new window in another alignment doesn't propagate title from original alignment's window