From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 24 Mar 2006 16:29:00 +0000 (+0000)
Subject: Feature settings
X-Git-Tag: Root_VamJalview_2_07b+
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=c5ae36527ac4366160ba09b88e5e74568f71b836

Feature settings
---

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 8c6c7d2..bef5e1a 100755
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -151,6 +151,11 @@ public class AlignViewport
     showSequenceFeatures = b;
   }
 
+  public boolean getShowSequenceFeatures()
+  {
+    return showSequenceFeatures;
+  }
+
 
   public void updateConservation()
   {
diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java
index c71a3cc..83a8340 100755
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -60,8 +60,17 @@ public class FeatureRenderer
     }
 
 
+    public void transferSettings(FeatureRenderer fr)
+    {
+      renderOrder = fr.renderOrder;
+      featureGroups = fr.featureGroups;
+      featureColours = fr.featureColours;
+    }
+
+
     public Color findFeatureColour(Color initialCol, SequenceI seq, int i)
     {
+      overview = true;
       if(!av.showSequenceFeatures)
         return initialCol;
 
diff --git a/src/jalview/appletgui/OverviewPanel.java b/src/jalview/appletgui/OverviewPanel.java
index e8f9f9f..a4b7f06 100755
--- a/src/jalview/appletgui/OverviewPanel.java
+++ b/src/jalview/appletgui/OverviewPanel.java
@@ -188,7 +188,6 @@ public class OverviewPanel
    {
      fr.featureGroups = ap.seqPanel.seqCanvas.getFeatureRenderer().featureGroups;
      fr.featureColours = ap.seqPanel.seqCanvas.getFeatureRenderer().featureColours;
-     fr.sequenceFeatures = ap.seqPanel.seqCanvas.getFeatureRenderer().sequenceFeatures;
    }
 
     resizing = true;