From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 31 Aug 2020 15:00:22 +0000 (+0100)
Subject: JAL-1191 use Cache.log for logging
X-Git-Tag: Develop-2_11_2_0-d20201215~24^2~15^2~3
X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff_plain;h=d69439b11486bf6cf09e479b78f9ab94af127671

JAL-1191 use Cache.log for logging
---

diff --git a/src/jalview/ext/so/SequenceOntology.java b/src/jalview/ext/so/SequenceOntology.java
index 89b2415..138aa58 100644
--- a/src/jalview/ext/so/SequenceOntology.java
+++ b/src/jalview/ext/so/SequenceOntology.java
@@ -115,7 +115,7 @@ public class SequenceOntology implements SequenceOntologyI
         }
       }
       long elapsed = System.currentTimeMillis() - now;
-      System.out.println("Loaded Sequence Ontology from " + zipFile + " ("
+      Cache.log.info("Loaded Sequence Ontology from " + zipFile + " ("
               + elapsed + "ms)");
     } catch (Exception e)
     {
@@ -337,7 +337,7 @@ public class SequenceOntology implements SequenceOntologyI
     {
       if (!termsNotFound.contains(term))
       {
-        System.err.println("SO term " + term + " invalid");
+        Cache.log.error("SO term " + term + " invalid");
         termsNotFound.add(term);
       }
     }