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JAL-4356 release notes
[jalview.git] / src / jalview /
2024-01-23 James ProcterMerge branch 'develop' into bug/JAL-4290_headless_align... tree | commitdiff
2024-01-23 Ben SoaresJAL-4367 Limit right and top adjustments tree | commitdiff
2024-01-23 Ben SoaresJAL-4290 Fix image comparison between gui and headless... tree | commitdiff
2024-01-23 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... tree | commitdiff
2024-01-23 James ProcterJAL-4369 invokeAndWait to avoid hang whilst calling... tree | commitdiff
2024-01-23 James ProcterJAL-4369 uniprotkb - try to avoid another redirect... tree | commitdiff
2024-01-23 James ProcterJAL-4369 use rest.uniprot.org as fetch domain tree | commitdiff
2024-01-23 James ProcterMerge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor... tree | commitdiff
2024-01-19 Ben SoaresJAL-4373 Setting the jvmmempc and jvmmemmax strings... bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch tree | commitdiff
2024-01-05 Ben SoaresJAL-4368 Only set a colour scheme if --colour is given... bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately tree | commitdiff
2023-12-19 Ben SoaresJAL-4290 Fixed one test tree | commitdiff
2023-12-18 Ben SoaresJAL-4290 incorrect usage of main() tree | commitdiff
2023-12-15 Ben SoaresJAL-4290 Add method to allow for specific settings... tree | commitdiff
2023-12-15 Ben SoaresJAL-4290 Set structureSelectionManager settings more... tree | commitdiff
2023-12-15 Ben SoaresJAL-4290 Move some annotation visibility settings to... tree | commitdiff
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... tree | commitdiff
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... tree | commitdiff
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling tree | commitdiff
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is... tree | commitdiff
2023-12-12 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... tree | commitdiff
2023-12-12 James ProcterMerge branch 'develop' into bug/JAL-4353_cannot_output_... tree | commitdiff
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to... tree | commitdiff
2023-12-12 Ben SoaresJAL-4353 helper method and test for primary/secondary... tree | commitdiff
2023-12-12 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... tree | commitdiff
2023-12-06 Ben SoaresJAL-4353 re-used random color code tree | commitdiff
2023-12-06 Ben SoaresJAL-4353 Preserve the user given 'linkedId' with ArgVal... tree | commitdiff
2023-12-06 James ProcterMerge branch 'patch/JAL-840_clustalx_docs_fix' into... tree | commitdiff
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... tree | commitdiff
2023-12-06 Ben SoaresJAL-4353 Add a 'random' colour to produce a random... tree | commitdiff
2023-12-05 Ben SoaresJAL-4353 Add secondary Types for Args, for STRUCTUREIMA... tree | commitdiff
2023-11-30 James ProcterJAL-4342 test and patch checking annotation csv export... patch/JAL-4342_emptyannotationsexport tree | commitdiff
2023-11-30 James ProcterPatch fixes JAL-4165 - added to release notes JAL-4351 tree | commitdiff
2023-11-30 Ben SoaresJAL-4344 careful application of -Djava.awt.headless... tree | commitdiff
2023-11-21 James ProcterJAL-4345 patch and release notes patch/JAL-4345_pae_epas1_doubleclick tree | commitdiff
2023-11-20 James ProcterJAL-4343 patch for JAL-4347 uniprot non-pos feature... tree | commitdiff
2023-11-15 James ProcterMerge branch 'bug/JAL-4334_unknownstartenduniprotfeatur... tree | commitdiff
2023-11-15 James ProcterMerge branch 'patch/JAL-4222_100s_timeout_on_imagexport... tree | commitdiff
2023-11-15 James ProcterJAL-4273 actually pass startSeq etc on to rendering... tree | commitdiff
2023-11-15 James ProcterJAL-4222 bail if we wait too long for Jmol to save... patch/JAL-4222_100s_timeout_on_imagexport tree | commitdiff
2023-11-15 James ProcterJAL-4090 blocker patch JAL-3772 tidy up groovy console... tree | commitdiff
2023-11-15 James ProcterJAL-4090 JAL-4334 position status when start, end or... bug/JAL-4334_unknownstartenduniprotfeatures tree | commitdiff
2023-11-13 James ProcterJAL-4090 JAL-1551 source license tree | commitdiff
2023-11-13 James ProcterJAL-4236 don’t look for headers in JalviewJS tree | commitdiff
2023-11-13 James ProcterJAL-4336 set preferred dimensions for JTextBox workarou... tree | commitdiff
2023-11-13 James ProcterJAL-4090 fix JAL-4236 - just put the name of the class... tree | commitdiff
2023-11-13 James ProcterJAL-4331 construct and pass on overview title before... tree | commitdiff
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply tree | commitdiff
2023-11-02 James ProcterJAL-4169 fix up urls to faq and documentation tree | commitdiff
2023-11-02 James ProcterMerge branch 'develop' into patch/JAL-3921_jmol_session... tree | commitdiff
2023-11-02 James ProcterJAL-4217 wrap progress bar creation in an invokeLater... tree | commitdiff
2023-11-02 James ProcterJAL-1551 formatting tree | commitdiff
2023-11-02 James ProcterMerge branch 'develop' into patch/JAL-3088_finalbraceno... tree | commitdiff
2023-11-02 James ProcterJAL-4289 JAL-4253 lower end of group boundary vertical... tree | commitdiff
2023-11-01 James ProcterMerge branch 'patch/JAL-4281_idwidthandannotHeight_in_p... tree | commitdiff
2023-11-01 James ProcterMerge branch 'feature/JAL-4315_fc_draganddrop' into... tree | commitdiff
2023-11-01 James ProcterMerge branch 'patch/JAL-4317_enablefeaturewhenadjusting... tree | commitdiff
2023-11-01 James ProcterMerge branch 'develop' into patch/JAL-4281_idwidthandan... tree | commitdiff
2023-11-01 James ProcterMerge branch 'patch/JAL-4260_fix_up_select_via_ruler_in... tree | commitdiff
2023-11-01 James ProcterJAL-4260 encapsulate logic for resolving nearest column... patch/JAL-4260_fix_up_select_via_ruler_in_wrapped tree | commitdiff
2023-11-01 James ProcterJAL-4260 reinstate annotation auto-id-width for wrapped... tree | commitdiff
2023-10-31 James ProcterJAL-4260 fix up click/drags on ruler area in wrapped... tree | commitdiff
2023-10-31 James ProcterJAL-4260 right align the annotation labels regardless... tree | commitdiff
2023-10-31 James ProcterJAL-244 noticed NPE exception was possible when visibil... tree | commitdiff
2023-10-31 James ProcterJAL-244 knock on - make sure alignPanel is laid out... tree | commitdiff
2023-10-30 James ProcterJAL-4317 enable display of feature when showing its... patch/JAL-4317_enablefeaturewhenadjustingstyle tree | commitdiff
2023-10-30 James ProcterHandle feature settings files loaded via drag and drop... feature/JAL-4315_fc_draganddrop tree | commitdiff
2023-10-30 James ProcterJAL-4315 allow feature settings to be loaded from a... tree | commitdiff
2023-10-30 James ProcterJAL-4315 identify feature settings file from its xml... tree | commitdiff
2023-10-26 James ProcterMerge branch 'bug/JAL-4313_cme_in_tests' into patch... tree | commitdiff
2023-10-25 Ben SoaresMerge branch 'develop' into bug/JAL-4289_group_boundary... bug/JAL-4289_group_boundary_not_drawn_properly_in_fastpaint_or_paint tree | commitdiff
2023-10-25 James ProcterJAL-4312 defend against ConcurrentModificationException bug/JAL-4313_cme_in_tests tree | commitdiff
2023-10-25 James ProcterJAL-4312 call AlignFrame.setAnnotationsVisibility on... tree | commitdiff
2023-10-23 James ProcterJAL-4311 fix ranking so models with like scores are... improvement/JAL-4124_dont_duplacate_PAE_data_acrossviews tree | commitdiff
2023-10-23 James ProcterJAL-4311 failing test case for 3d-beacons epas1_human... tree | commitdiff
2023-10-23 James ProcterJAL-4310 let the user know when model pages are not... tree | commitdiff
2023-10-23 James ProcterMerge branch 'develop' into improvement/JAL-4124_dont_d... tree | commitdiff
2023-10-23 James ProcterMerge branch 'feature/JAL-4307_hetatm_showhide' into... tree | commitdiff
2023-10-23 James ProcterJAL-4090 defensive check for featureSettings redraws... improvement/JAL-4308_smalleridtooltip tree | commitdiff
2023-10-23 James ProcterJAL-4308 reduce number of refs to 5, always have canoni... tree | commitdiff
2023-10-22 James ProcterJAL-1551 errant tab and import tree | commitdiff
2023-10-22 James ProcterMerge branch 'patch/JAL-4298_synchronize_consoledoc... tree | commitdiff
2023-10-21 James ProcterJAL-1332 JAL-4298 JAL-3772 rejig the quit handler so... jims/bug/JAL-4298_java_console_causing_hang_at_startup tree | commitdiff
2023-10-20 James ProcterMerge branch 'improvement/JAL-3783_upgrade_to_groovy... tree | commitdiff
2023-10-20 Ben SoaresJAL-4298 Remove a stray return in the processGroovyScri... tree | commitdiff
2023-10-20 James ProcterJAL-4298 reuse existing log level preference method tree | commitdiff
2023-10-20 James ProcterJAL-4307 also report molecule name in tooltip for show... feature/JAL-4307_hetatm_showhide tree | commitdiff
2023-10-20 Ben SoaresJAL-4298 another implicated line bug/JAL-4298_java_console_causing_hang_at_startup tree | commitdiff
2023-10-20 James ProcterMerge branch 'feature/JAL-4307_hetatm_showhide' into... tree | commitdiff
2023-10-20 James ProcterJAL-4307 some models return null for hetatm list tree | commitdiff
2023-10-20 James ProcterJAL-4298 try much harder to avoid modifying console... patch/JAL-4298_synchronize_consoledoc tree | commitdiff
2023-10-19 Ben SoaresMerge branch 'patch/JAL-4298_synchronize_consoledoc... tree | commitdiff
2023-10-19 Ben SoaresJAL-629 Fix --nodebug turning off debug mode from prope... tree | commitdiff
2023-10-19 Ben SoaresJAL-4298 comment markers tree | commitdiff
2023-10-19 Ben SoaresMerge branch 'improvement/JAL-3783_upgrade_to_groovy... tree | commitdiff
2023-10-19 James ProcterJAL-4298 avoid deadlock waiting to update doc when... tree | commitdiff
2023-10-19 Ben SoaresJAL-4305 Isolate and unify the Jalview object from... tree | commitdiff
2023-10-19 James ProcterJAL-4307 View->Ligands submenu, implementation for... tree | commitdiff
2023-10-19 Ben SoaresMerge branch 'improvement/JAL-3783_upgrade_to_groovy... tree | commitdiff
2023-10-18 Ben SoaresJAL-629 Run non-alignframe linked groovy scripts. ... tree | commitdiff
2023-10-18 Ben SoaresJAL-4262 Fix the nonblockingdialog so that Jalview... tree | commitdiff
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