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JAL-3365 expand range of allowed DSSP secondary structure symbols in Stockholm files
[jalview.git] / test /
2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structu... tree | commitdiff
2022-04-05 Jim ProcterJAL-3981 patch tests and remove errant imports tree | commitdiff
2022-04-05 Jim ProcterJAL-3990 gradle spotlessApply tree | commitdiff
2022-03-31 Jim ProcterJAL-3085 update tests and mock responses, new P0dtd1... tree | commitdiff
2022-03-30 Jim ProcterJAL-3976 fix mock PDBFTS query & responses patch/JAL-3976_3dbeaconsnull tree | commitdiff
2022-03-23 Jim ProcterJAL-3976 update tests tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 apply copyright to tests spike/try_spotless_JAL-3438 tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-03-08 Jim ProcterJAL-3108 updated Ensembl client and model species names tree | commitdiff
2022-02-17 Jim ProcterJAL-3551 patch superpose test for additional undo dis... tree | commitdiff
2022-02-15 Jim ProcterJAL-1761 backbone type parameter for configuring which... tree | commitdiff
2022-02-15 Jim ProcterJAL-1761 need to pass molecule type when generating... tree | commitdiff
2022-02-15 Jim ProcterJAL-3551 patch test for altloc handling atom spec in... tree | commitdiff
2022-02-14 Jim ProcterJAL-3956 - PDBEntry objects constructed from 3D-Beacons... tree | commitdiff
2022-02-12 Jim ProcterMerge branch 'update/JAL-3949_jalview_bin_Console_to_cu... tree | commitdiff
2022-02-12 Ben SoaresJAL-3949 fix testProps path and make line count more... update/JAL-3949_jalview_bin_Console_to_cure_sanity_even_more tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 increase command line ops test timeout tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 ensure Jalview command line ops setup actually... tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 fixed failing commandlinetests due to more... tree | commitdiff
2022-02-11 Ben SoaresMerge branch 'develop' into update/JAL-3949_abstracted_... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... tree | commitdiff
2022-02-04 Jim ProcterMerge branch 'bug/JAL-3806_mappingCoversSequence_for211... bug/JAL-3806_without_shared_DS_for_2_11_2 tree | commitdiff
2022-02-04 Jim ProcterJAL-3806 JAL-3725 update tests since CDS mappings now... tree | commitdiff
2022-02-03 Jim ProcterJAL-2305 comments re testFindXrefSequences_withFetch... tree | commitdiff
2022-01-28 Jim ProcterJAL-3137 tests are for linux only tree | commitdiff
2022-01-28 Jim ProcterMerge branch 'merge/develop_JAL-3725' into develop tree | commitdiff
2022-01-26 Jim ProcterJAL-3763 (for whatever reason) need to increase timeout... tree | commitdiff
2022-01-26 Jim ProcterJAL-3763 (for whatever reason) need to increase timeout... merge/develop_task/JAL-3763_newDatasetForCds tree | commitdiff
2022-01-26 Jim ProcterMerge branch 'task/JAL-3763_newDatasetForCds' into... tree | commitdiff
2022-01-26 Jim ProcterJAL-3806 JAL-3725 propagate relaxed criteria for stop... tree | commitdiff
2022-01-26 gmungocJAL-3725 restrict mapped virtual feature location to... tree | commitdiff
2022-01-26 gmungocJAL-3725 helper methods for computing mapped feature... tree | commitdiff
2022-01-26 gmungocJAL-3725 exclude stop codon from CDS-to-protein mapping tree | commitdiff
2022-01-17 Jim ProcterJAL-3703 patch Windows save file test for 2.11.1 codebase patch/r2_11_1_branch_JAL-3703_closing_files tree | commitdiff
2022-01-17 Ben SoaresJAL-3703 Test that fails in Windows only, and only... tree | commitdiff
2022-01-12 Ben SoaresJAL-3703 Test that fails in Windows only, and only... tree | commitdiff
2021-11-08 Jim ProcterJAL-3855 verify pdb suffix is preserved when locally... tree | commitdiff
2021-11-05 Jim ProcterJAL-3829 remove duplicate IDs in 3DBeacons generated... tree | commitdiff
2021-11-05 Jim ProcterJAL-3919 use model format field to ensure we get the... tree | commitdiff
2021-11-02 Jim ProcterJAL-3875 test case and patch to verify the query 3d... tree | commitdiff
2021-10-18 Jim ProcterJAL-3904 failing test tree | commitdiff
2021-10-01 gmungocJAL-3725 restrict mapped virtual feature location to... tree | commitdiff
2021-10-01 gmungocJAL-3725 helper methods for computing mapped feature... tree | commitdiff
2021-10-01 gmungocJAL-3725 exclude stop codon from CDS-to-protein mapping tree | commitdiff
2021-09-24 Jim ProcterJAL-3821 data file for failing test tree | commitdiff
2021-09-23 Jim ProcterJAL-3821 less ambiguous base class name for EMBL and... tree | commitdiff
2021-09-23 Jim ProcterJAL-3821 failing test tree | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2021-09-21 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'... tree | commitdiff
2021-09-21 Jim ProcterJAL-3829 ignore the fake ID generated when a PDB format... tree | commitdiff
2021-09-20 Jim ProcterJAL-3829 updated response for P01308 tree | commitdiff
2021-09-20 Jim ProcterJAL-3829 tests need to wait for dialog to be closed... tree | commitdiff
2021-09-20 Jim ProcterJAL-3829 TDBeacons fetcher needs a sequence with at... tree | commitdiff
2021-09-20 Jim ProcterJAL-3829 allow PDBEntry with file and ID with mismatchi... tree | commitdiff
2021-09-17 gmungocJAL-1260 unit test for FileFormats updated for GenBank/ENA tree | commitdiff
2021-09-17 gmungocJAL-1260 file formats and IdentifyFile updates for... tree | commitdiff
2021-09-17 gmungocJAL-1260 refactored GenBank (and EMBL) flat file parser tree | commitdiff
2021-09-17 Jim ProcterJAL-2226 new method to search for annotation matching... tree | commitdiff
2021-09-16 gmungocJAL-3779 apply properties to all groups with given... tree | commitdiff
2021-09-16 Jim ProcterJAL-3794 new test for recognition of protein or DNA... tree | commitdiff
2021-09-16 Ben SoaresJAL-3761 listToArray became rangeListToArray tree | commitdiff
2021-09-16 gmungocJAL-3761 locateInFrom/To revised with tests; unused... tree | commitdiff
2021-09-16 gmungocJAL-3761 debugged and working (but not tidied) locateIn... tree | commitdiff
2021-09-16 gmungocJAL-3761 locateInFrom2 work in progress commit tree | commitdiff
2021-09-15 gmungocJAL-3761 unit test for MapList.countPos() tree | commitdiff
2021-09-15 gmungocJAL-3761 failing test, formatting, method renamed tree | commitdiff
2021-09-15 gmungocJAL-3761 failing tests for locateInFrom/To with overlap... tree | commitdiff
2021-09-15 gmungocJAL-3751 only merge strictly contiguous ranges of mappings tree | commitdiff
2021-09-15 Ben SoaresMerge branch 'develop' into merge/develop_ben2 tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 parallel not welcome here tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 test flakiness and human flakiness tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 more info on test fail - seems to be flaky tree | commitdiff
2021-09-14 Jim ProcterJAL-3855 detect an alphafold model and import its tempe... tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 move mock query and responses to files tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 allow multiple URL mocks and include P01308... tree | commitdiff
2021-09-13 Jim ProcterJAL-3829 ensure unmock the FTS PDB and TDB clients... tree | commitdiff
2021-09-13 Jim ProcterJAL-3829 minimal test of additional TDB filters - not... tree | commitdiff
2021-09-11 Jim ProcterJAL-3829 ensure tests use mocked service - proper excep... tree | commitdiff
2021-09-11 Jim ProcterJAL-3829 patch failing tests and todo for future tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 insert title for structures from PDBe tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 update for v1.0 3d-beacons api spec tree | commitdiff
2021-09-08 Jim ProcterJAL-3829 allow client-side selection of structures... tree | commitdiff
2021-09-08 Jim ProcterJAL-3829 formatting tree | commitdiff
2021-09-08 Jim ProcterJAL-3829 integration test verifying mock response is... tree | commitdiff
2021-09-06 Jim ProcterJAL-3829 work in progress - look up additional metadata... tree | commitdiff
2021-09-06 Jim ProcterJAL-3829 mocking for PDBFTS for related query to Unipro... tree | commitdiff
2021-09-06 Jim ProcterJAL-3829 pull out structure chooser query source tests... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 JAL-3865 test structure chooser queries to... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 use sequence dependent constructor for structu... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 mocking for testing 3D-Beacons FTS endpoint tree | commitdiff
2021-09-03 Jim ProcterJAL-3863 promote non-canonical version of dbref to... tree | commitdiff
2021-09-03 Jim ProcterJAL-3863 passing test to verify a uniprot accession... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the Struct... tree | commitdiff
2021-09-02 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... tree | commitdiff
2021-09-02 gmungocJAL-1842 unit test updated for EnsemblGene feature... tree | commitdiff
2021-08-30 Jim ProcterJAL-3863 fix test and note about fragility tree | commitdiff
2021-08-30 Jim ProcterJAL-3863 mark first accession retrieved from Uniprot... tree | commitdiff
2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet... tree | commitdiff
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