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Merge branch 'develop' into issues/JAL-3553+JAL-3978+JAL-3989+JAL-4014_merged_with_de...
[jalview.git] / utils /
2022-05-09 Ben SoaresJAL-4004 Temporary mechanism to add JalviewJS link... tree | commitdiff
2022-05-09 Ben SoaresJAL-3989 Code tidying, added JVL_HEADER for older versi... tree | commitdiff
2022-05-05 Ben SoaresJAL-4004 Now generating hugo files from help/markdown/... tree | commitdiff
2022-05-03 Ben SoaresJAL-3989 improved parsing and formatting now using... tree | commitdiff
2022-04-27 Ben SoaresJAL-3989 Populate template files for hugo build: archiv... tree | commitdiff
2022-04-25 Ben SoaresJAL-3989 moved getdown build dirs to build/website... tree | commitdiff
2022-03-31 Ben SoaresMerge branch 'task/JAL-3553_improved_install4j_output_t... tree | commitdiff
2022-03-18 Ben SoaresJAL-3978 New tasks to build archive 'old' dir with... tree | commitdiff
2022-03-16 Ben SoaresJAL-3978 task stub and getdown splash screens tree | commitdiff
2022-03-10 Jalview Developmen... JAL-3796 include entitlements when codesigning for... tree | commitdiff
2022-03-02 Ben SoaresJAL-3962 Added jre/bin and dist folders to the native... tree | commitdiff
2022-03-02 Ben SoaresJAL-3130 updated download_jres.sh tree | commitdiff
2022-02-23 Jalview Developmen... JAL-3796 additional steps for notarization tree | commitdiff
2022-01-29 Ben SoaresJAL-3830 JAL-3420 added new jvl_file to install4j9... tree | commitdiff
2022-01-29 Ben SoaresMerge branch 'develop' into improvement/JAL-3830_instal... tree | commitdiff
2022-01-28 Ben Soaresnew jvl_file svg, png, ico and icns files, and changed... tree | commitdiff
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal... tree | commitdiff
2021-12-07 Ben SoaresJAL-3930 Added a customizedId="JALVIEW" to launcher... tree | commitdiff
2021-12-07 Ben SoaresJAL-3930 Added a customizedId="JALVIEW" to launcher... tree | commitdiff
2021-11-29 Ben SoaresJAL-3594 correct Jalview Develop logo SVG added in... tree | commitdiff
2021-11-19 Ben SoaresJAL-3553 now creating a json file for use on website... tree | commitdiff
2021-11-16 Ben SoaresJAL-3553 added customized labels for install4j output.txt tree | commitdiff
2021-11-16 Ben SoaresJAL-3553 improve the labels in install4j's output.txt... tree | commitdiff
2021-11-01 Ben SoaresJAL-3907 added creation of symbolic links to workaround... tree | commitdiff
2021-10-28 Ben SoaresJAL-3830 forgot to uncheck this tree | commitdiff
2021-10-28 Ben SoaresJAL-3830 polished setup app for macos tree | commitdiff
2021-10-27 Ben SoaresJAL-3830 quick fix to installer text tree | commitdiff
2021-10-27 Ben SoaresJAL-3830 install4j9 tries to parse and can't cope with... tree | commitdiff
2021-10-26 Ben SoaresJAL-3830 Added steps for install4j9 to create macOS... tree | commitdiff
2021-10-26 Ben SoaresJAL-3907 adjusted download_jdks.sh and download_jres... tree | commitdiff
2021-10-01 Ben SoaresMerge branch 'develop' into improvement/JAL-3594_logos_... improvement/JAL-3594_logos_for_jalview_test tree | commitdiff
2021-10-01 Ben SoaresJAL-3594 New Jalview Test logos and .icns/.ico creation... tree | commitdiff
2021-09-30 Ben SoaresJAL-3594 Changed logo for Jalview Test tree | commitdiff
2021-09-30 Ben SoaresJAL-1260 Added .gbk to GenBank extensions. Added GenBa... tree | commitdiff
2021-09-27 Jim ProcterJAL-3746 update the example corefile for jalviewjs tree | commitdiff
2021-09-21 Ben SoaresJAL-3521 'Debian-safe' version of minimal build.gradle... tree | commitdiff
2021-09-20 Ben SoaresJAL-3521 Created a patch file to transform build.gradle... tree | commitdiff
2021-09-20 Ben SoaresJAL-3521 working minimal build.gradle for debian and... merge/develop_JAL-3521_minimal_build.gradle_file tree | commitdiff
2021-09-20 Ben SoaresJAL-3521 not quite working minimal build.gradle for... tree | commitdiff
2021-09-14 Jim ProcterJAL-3815 default /etc/jalview_properties under utils... tree | commitdiff
2021-09-14 Ben SoaresJAL-3521 Adjusted wrapper shell script and .desktop... tree | commitdiff
2021-09-14 Ben SoaresJAL-3521 High quality file icons for jalview associated... tree | commitdiff
2021-09-12 Jim ProcterJAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to... tree | commitdiff
2021-06-18 Ben SoaresJAL-3594 Updated the Jalview Develop getdown splashscre... tree | commitdiff
2021-04-13 Ben SoaresJAL-3830 Improved jalview.bat to find either pwsh.exe... tree | commitdiff
2021-03-31 Ben SoaresJAL-3830 BAT file wrapper around powershell, so jalview... tree | commitdiff
2021-03-30 Ben SoaresJAL-3830 Follow all SymbolicLinks in Windows powershell... tree | commitdiff
2021-03-26 Ben SoaresJAL-3830 delete channel.props and channel.propsv when... tree | commitdiff
2021-03-24 Ben SoaresJAL-3830 Moved wrappers to bin/jalview.* and make a... tree | commitdiff
2021-03-19 Ben SoaresJAL-3594 Making default .jalview_properties file separa... tree | commitdiff
2021-03-17 Ben SoaresJAL-3830 Allow paths to start with '~'. Make path check... tree | commitdiff
2021-03-17 Ben SoaresJAL-3830 Now using a single universal bash script ... tree | commitdiff
2021-03-17 Ben SoaresJAL-3830 add the windows bash script to getdown files... tree | commitdiff
2021-03-17 Ben SoaresJAL-3830 bash script that works in both cygwin and... tree | commitdiff
2021-03-15 Ben SoaresJAL-3830 Delete wrapper scripts and getdown *v files... tree | commitdiff
2021-03-15 Ben SoaresJAL-3830 powershell wrapper tested on linux, macos... tree | commitdiff
2021-03-14 Ben SoaresJAL-3830 minor fix in powershell wrapper tree | commitdiff
2021-03-14 Ben SoaresJAL-3830 powershell follows symlinks as they do exist... tree | commitdiff
2021-03-14 Ben SoaresJAL-3830 Powershell wrapper now works cross-platform... tree | commitdiff
2021-03-14 Ben SoaresJAL-3830 Make wrapper scripts executable tree | commitdiff
2021-03-12 Ben SoaresJAL-3830 powershell wrapper tested and fixed tree | commitdiff
2021-03-12 Ben SoaresJAL-3830 improved bash scripts. Added powershell script... tree | commitdiff
2021-03-12 Ben SoaresJAL-3830 unix and macos wrappers. Symbolic link to... tree | commitdiff
2021-03-11 Ben SoaresJAL-3830 Improved for .app dir name with spaces, e... tree | commitdiff
2021-03-10 Ben SoaresJAL-3830 install4j adds script to Jalview.app/Contents... tree | commitdiff
2021-03-10 Ben SoaresJAL-3830 first draft of wrapper script to go in macOS... tree | commitdiff
2021-03-05 Jalview Developmen... Merge branch 'develop' into task/JAL-3796_notarization tree | commitdiff
2021-03-05 Jalview Developmen... JAL-3796 minimal steps for notarization and the entitle... tree | commitdiff
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences... tree | commitdiff
2021-02-12 Ben SoaresJAL-3521 High quality file icons for jalview associated... releases/Release_2_11_1_4_debianpatches tree | commitdiff
2021-02-08 Ben SoaresJAL-3521 Adjusted wrapper shell script and .desktop... tree | commitdiff
2021-02-07 Jim ProcterJAL-3815 default /etc/jalview_properties under utils... tree | commitdiff
2021-02-06 Ben SoaresJAL-3251 debian build using maven, simplified build... tree | commitdiff
2021-02-06 Ben SoaresJAL-3521 Moved the debian build.gradle to utils/debian... tree | commitdiff
2021-01-28 Jalview Developmen... Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalvie... tree | commitdiff
2021-01-28 Jalview Developmen... Merge branch 'develop' into task/JAL-3796_notarization_... tree | commitdiff
2021-01-28 Jalview Developmen... Merge branch 'develop' into task/JAL-3796_notarization tree | commitdiff
2021-01-26 Ben SoaresJAL-3521 Updating file opening marker to %u tree | commitdiff
2021-01-26 Ben SoaresJAL-3521 Updating file opening marker to %u tree | commitdiff
2021-01-26 Ben SoaresJAL-3521 Debian mime-type and desktop helper files... tree | commitdiff
2021-01-26 Ben SoaresJAL-3521 Debian mime-type and desktop helper files... tree | commitdiff
2021-01-22 Ben SoaresJAL-3805 Smaller DMG Finder windows for all DS_Store... task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch tree | commitdiff
2021-01-22 Ben SoaresJAL-3805 New DS_Store for smaller DMG Finder window tree | commitdiff
2021-01-22 Ben SoaresJAL-3805 Remove Uninstall Old Jalview.app in Release_2_... tree | commitdiff
2021-01-14 Jalview Developmen... JAL-3796 update signature for uninstaller on OSX tree | commitdiff
2021-01-14 Jalview Developmen... JAL-3796 update to Install4j 8.0.10 and add config... tree | commitdiff
2020-12-11 Ben SoaresJAL-3594 Adjustments to allow JalviewJS to use ChannelP... tree | commitdiff
2020-12-10 Ben SoaresJAL-3594 Better Jalview Develop banner tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 Improved About banners for develop and test... tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 Images for splash screen tree | commitdiff
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... tree | commitdiff
2020-12-08 Ben SoaresJAL-3594 Change main window title tree | commitdiff
2020-12-08 Ben SoaresJAL-3594 DMG fixes tree | commitdiff
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews... tree | commitdiff
2020-12-05 Ben SoaresJAL-3594 Default values for channel properties defined... tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 Added rotating logo png tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 Generating GIMP XCF files for getdown and... tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 Release images and channel properties tree | commitdiff
2020-12-03 Ben SoaresJAL-3594 New way for build.gradle to override propertie... tree | commitdiff
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