jalview.git
3 years agoMerge branch 'develop' into releases/Release_2_11_Branch releases/Release_2_11_Branch Release_2_11_0
Jim Procter [Thu, 4 Jul 2019 15:41:06 +0000 (16:41 +0100)]
Merge branch 'develop' into releases/Release_2_11_Branch

3 years agoJAL-3111 correct JVL appbase for 2.10.5 via getdown
Jim Procter [Thu, 4 Jul 2019 15:40:13 +0000 (16:40 +0100)]
JAL-3111 correct JVL appbase for 2.10.5 via getdown

3 years agoMerge branch 'develop' into releases/Release_2_11_Branch
Jim Procter [Thu, 4 Jul 2019 15:34:48 +0000 (16:34 +0100)]
Merge branch 'develop' into releases/Release_2_11_Branch

3 years agoMerge branch 'task/JAL-3337-rm-lib-update-sourceDist' into develop
Jim Procter [Thu, 4 Jul 2019 15:34:12 +0000 (16:34 +0100)]
Merge branch 'task/JAL-3337-rm-lib-update-sourceDist' into develop

3 years agoMerge branch 'develop' of http://source.jalview.org/git/jalview into develop
Jim Procter [Thu, 4 Jul 2019 15:33:48 +0000 (16:33 +0100)]
Merge branch 'develop' of source.jalview.org/git/jalview into develop

3 years agoJAL-3337 round-and-round the process source files again
Jim Procter [Thu, 4 Jul 2019 15:31:47 +0000 (16:31 +0100)]
JAL-3337 round-and-round the process source files again

3 years agoJAL-3337 more includes and excludes
Jim Procter [Thu, 4 Jul 2019 15:23:16 +0000 (16:23 +0100)]
JAL-3337 more includes and excludes

3 years agoJAL-3337 remove the old lib directory ! task/JAL-3337-rm-lib-update-sourceDist
Jim Procter [Thu, 4 Jul 2019 14:52:05 +0000 (15:52 +0100)]
JAL-3337 remove the old lib directory !

3 years agoJAL-3337 rejig the source distribution generation to process and replace tokens in...
Jim Procter [Thu, 4 Jul 2019 14:51:28 +0000 (15:51 +0100)]
JAL-3337 rejig the source distribution generation to process and replace tokens in source files

3 years agoJAL-3111 replace year in header for help pages and put processed help in build/distri...
Jim Procter [Thu, 4 Jul 2019 14:36:07 +0000 (15:36 +0100)]
JAL-3111 replace year in header for help pages and put processed help in build/distributions

3 years agoJAL-3225 try/catch for non-deprecated/deprecated property in sourceDist which is...
Ben Soares [Thu, 4 Jul 2019 13:43:47 +0000 (14:43 +0100)]
JAL-3225 try/catch for non-deprecated/deprecated property in sourceDist which is not available on older eclipses

3 years agoJAL-3353 Change to build.gradle to use the file:// enabled getdown-launcher-local...
Ben Soares [Thu, 4 Jul 2019 13:16:14 +0000 (14:16 +0100)]
JAL-3353 Change to build.gradle to use the file:// enabled getdown-launcher-local.jar for LOCAL and ARCHIVELOCAL builds only. Otherwise the getdown-launcher.jar (with no local file enabled) will be used

3 years agoMerge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
gmungoc [Thu, 4 Jul 2019 12:09:21 +0000 (13:09 +0100)]
Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop

3 years agoJAL-3111 help pages minor corrections
gmungoc [Thu, 4 Jul 2019 12:09:13 +0000 (13:09 +0100)]
JAL-3111 help pages minor corrections

3 years agoJAL-3348 fixed an internal href in help to allow building
Ben Soares [Thu, 4 Jul 2019 11:26:37 +0000 (12:26 +0100)]
JAL-3348 fixed an internal href in help to allow building

3 years agoJAL-3337 adjusted building doc as sourceDist uses gradle 5.2 or above properties
Ben Soares [Thu, 4 Jul 2019 11:25:43 +0000 (12:25 +0100)]
JAL-3337 adjusted building doc as sourceDist uses gradle 5.2 or above properties

3 years agoMerge branch 'task/JAL-3348_document_cli_memory_settings_when_launching_jalview'...
Jim Procter [Thu, 4 Jul 2019 08:08:21 +0000 (09:08 +0100)]
Merge branch 'task/JAL-3348_document_cli_memory_settings_when_launching_jalview' into develop

3 years agoJAL-3111 JAL-3348 JVL file documentation
Jim Procter [Thu, 4 Jul 2019 08:05:12 +0000 (09:05 +0100)]
JAL-3111 JAL-3348 JVL file documentation

3 years agoJAL-3348 revised bsoares memory settings documentation and updated docs for launching...
Jim Procter [Thu, 4 Jul 2019 07:36:42 +0000 (08:36 +0100)]
JAL-3348 revised bsoares memory settings documentation and updated docs for launching jalview from command line

3 years agoMerge branch 'develop' into task/JAL-3348_document_cli_memory_settings_when_launching...
Ben Soares [Thu, 4 Jul 2019 00:04:51 +0000 (01:04 +0100)]
Merge branch 'develop' into task/JAL-3348_document_cli_memory_settings_when_launching_jalview

merging in develop

3 years agoJAL-3348 memory.html documentation finished for 2.11.0
Ben Soares [Wed, 3 Jul 2019 23:59:39 +0000 (00:59 +0100)]
JAL-3348 memory.html documentation finished for 2.11.0

3 years agoJAL-3348 jvmmempc in jvl file now works in linux
Ben Soares [Wed, 3 Jul 2019 22:42:35 +0000 (23:42 +0100)]
JAL-3348 jvmmempc in jvl file now works in linux

3 years agoJAL-3348 jvmmempc multiple values shouldn't be merged
Ben Soares [Wed, 3 Jul 2019 22:14:41 +0000 (23:14 +0100)]
JAL-3348 jvmmempc multiple values shouldn't be merged

3 years agoJAL-3111 tidy up lists/indentation for release notes
Jim Procter [Wed, 3 Jul 2019 19:58:37 +0000 (20:58 +0100)]
JAL-3111 tidy up lists/indentation for release notes

3 years agoMerge branch 'develop' into releases/Release_2_11_Branch
Jim Procter [Wed, 3 Jul 2019 17:36:59 +0000 (18:36 +0100)]
Merge branch 'develop' into releases/Release_2_11_Branch

3 years agoJAL-3111 Java 11 only and 'onwards'
Jim Procter [Wed, 3 Jul 2019 17:36:25 +0000 (18:36 +0100)]
JAL-3111 Java 11 only and 'onwards'

3 years agoJAL-3111 more whatsNew tweaks
Jim Procter [Wed, 3 Jul 2019 17:35:15 +0000 (18:35 +0100)]
JAL-3111 more whatsNew tweaks

3 years agoMerge branch 'task/JAL-3337_gradle_tasks_sourceDist_and_help2Website' into develop
Jim Procter [Wed, 3 Jul 2019 17:06:46 +0000 (18:06 +0100)]
Merge branch 'task/JAL-3337_gradle_tasks_sourceDist_and_help2Website' into develop

3 years agoJAL-3111 more whats new
Jim Procter [Wed, 3 Jul 2019 17:05:14 +0000 (18:05 +0100)]
JAL-3111 more whats new

3 years agoJAL-3348 start of new memory setting text
Ben Soares [Wed, 3 Jul 2019 16:24:57 +0000 (17:24 +0100)]
JAL-3348 start of new memory setting text

3 years agoJAL-3348 jvmmempc allowed in jvl file
Ben Soares [Wed, 3 Jul 2019 16:06:55 +0000 (17:06 +0100)]
JAL-3348 jvmmempc allowed in jvl file

3 years agoMerge branch 'develop' into task/JAL-3348_document_cli_memory_settings_when_launching...
Ben Soares [Wed, 3 Jul 2019 15:24:54 +0000 (16:24 +0100)]
Merge branch 'develop' into task/JAL-3348_document_cli_memory_settings_when_launching_jalview

merging in develop

3 years agoMerge branch 'documentation/JAL-2843_featureFiltersFormat' into develop
Jim Procter [Wed, 3 Jul 2019 12:58:20 +0000 (13:58 +0100)]
Merge branch 'documentation/JAL-2843_featureFiltersFormat' into develop

3 years agoJAL-3348 prepping getdown to pass JVM command line args
Ben Soares [Wed, 3 Jul 2019 00:36:50 +0000 (01:36 +0100)]
JAL-3348 prepping getdown to pass JVM command line args

3 years agoJAL-3111 updated what’s new… still more to come !
Jim Procter [Tue, 2 Jul 2019 22:35:18 +0000 (23:35 +0100)]
JAL-3111 updated what’s new… still more to come !

3 years agoJAL-3111 updated privacy statement to remove mention of JNLP version checker JAL...
Jim Procter [Tue, 2 Jul 2019 22:34:46 +0000 (23:34 +0100)]
JAL-3111 updated privacy statement to remove mention of JNLP version checker JAL-3280

3 years agoJAL-3111 JAL-3150 revised Jalview archive documentation and noted instructions about...
Jim Procter [Tue, 2 Jul 2019 22:30:52 +0000 (23:30 +0100)]
JAL-3111 JAL-3150 revised Jalview archive documentation and noted instructions about converting Jalview project files pre Jalview 2.1.

3 years agoJAL-3111 JAL-3348 removed pre 2.11 instructions on setting Jalview’s memory settings...
Jim Procter [Tue, 2 Jul 2019 22:20:04 +0000 (23:20 +0100)]
JAL-3111 JAL-3348 removed pre 2.11 instructions on setting Jalview’s memory settings. Needs information about configuring proportion of memory allocated.

3 years agoJAL-3111 JAL-3280 hide the version check preference option in ‘Connections’ tab
Jim Procter [Tue, 2 Jul 2019 22:18:13 +0000 (23:18 +0100)]
JAL-3111 JAL-3280 hide the version check preference option in ‘Connections’ tab

3 years agoJAL-3111 tidied up preferences dialog documentation
Jim Procter [Tue, 2 Jul 2019 22:11:00 +0000 (23:11 +0100)]
JAL-3111 tidied up preferences dialog documentation

3 years agoJAL-3111 fix broken helpTOC link
Jim Procter [Tue, 2 Jul 2019 20:21:09 +0000 (21:21 +0100)]
JAL-3111 fix broken helpTOC link

3 years agoMerge branch 'tasks/JAL-3311_removeVamsasMenu' into develop
Jim Procter [Tue, 2 Jul 2019 20:19:46 +0000 (21:19 +0100)]
Merge branch 'tasks/JAL-3311_removeVamsasMenu' into develop

3 years agoMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu
Jim Procter [Tue, 2 Jul 2019 19:47:52 +0000 (20:47 +0100)]
Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu

3 years agoMerge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website
Ben Soares [Tue, 2 Jul 2019 19:26:50 +0000 (20:26 +0100)]
Merge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website

merging in develop

3 years agoJAL-3337 Tidied up j8libs in THIRDPARTYLIBS. Replaced jersey-*-1.19.jar with jersey...
Ben Soares [Tue, 2 Jul 2019 19:16:01 +0000 (20:16 +0100)]
JAL-3337 Tidied up j8libs in THIRDPARTYLIBS. Replaced jersey-*-1.19.jar with jersey-*-1.19.4.jar in j8lib.  Removed lib/ folder from sourceDist.  Added instructions for running testNG with a specific group of tests to building.md

3 years agoJAL-3111 release date now 4th July 2019 - codename 'bastille'
Jim Procter [Tue, 2 Jul 2019 15:06:55 +0000 (16:06 +0100)]
JAL-3111 release date now 4th July 2019 - codename 'bastille'

3 years agoMerge branch 'documentation/JAL-3111_release_211' into develop
Jim Procter [Tue, 2 Jul 2019 14:34:10 +0000 (15:34 +0100)]
Merge branch 'documentation/JAL-3111_release_211' into develop

3 years agoJAL-3111 formatting
Jim Procter [Tue, 2 Jul 2019 14:33:20 +0000 (15:33 +0100)]
JAL-3111 formatting

3 years agoJAL-3111 new known defect from JAL-797
Jim Procter [Tue, 2 Jul 2019 14:32:53 +0000 (15:32 +0100)]
JAL-3111 new known defect from JAL-797

3 years agoJAL-3111 release notes for JAL-2789 JAL-2744 JAL-1889 JAL-3287 JAL-3289 JAL-3288
Jim Procter [Tue, 2 Jul 2019 14:30:11 +0000 (15:30 +0100)]
JAL-3111 release notes for JAL-2789 JAL-2744 JAL-1889 JAL-3287 JAL-3289 JAL-3288

3 years agoJAL-3111 whats new and JAL-2738 JAL-2743 expanded help documentation for VCF
Jim Procter [Tue, 2 Jul 2019 14:28:19 +0000 (15:28 +0100)]
JAL-3111 whats new and JAL-2738 JAL-2743 expanded help documentation for VCF

3 years agoMerge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website
Ben Soares [Tue, 2 Jul 2019 12:34:30 +0000 (13:34 +0100)]
Merge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website

Merging in develop

3 years agoJAL-3337 Excluding j11modDir from source distribution (has some older version jars...
Ben Soares [Tue, 2 Jul 2019 12:34:23 +0000 (13:34 +0100)]
JAL-3337 Excluding j11modDir from source distribution (has some older version jars converted to mods and none of these files are used in the build -- jars are all in j11libDir and used as libs not mods).

3 years agoJAL-3337 Updated the j11lib jars (don't need to be converted to modules) that aren...
Ben Soares [Tue, 2 Jul 2019 12:30:43 +0000 (13:30 +0100)]
JAL-3337 Updated the j11lib jars (don't need to be converted to modules) that aren't in j8libs. Added licensing information for these jars to THIRDPARTYLIBS.

3 years agoJAL-3337 gradle.properties for publish help as html pages
Jim Procter [Tue, 2 Jul 2019 12:25:22 +0000 (13:25 +0100)]
JAL-3337 gradle.properties for publish help as html pages

3 years agoJAL-3337 publish help as html pages with GA tracker (ant task rescued from old build...
Jim Procter [Tue, 2 Jul 2019 11:01:57 +0000 (12:01 +0100)]
JAL-3337 publish help as html pages with GA tracker (ant task rescued from old build system)

3 years agoJAL-3337 starting to add to THIRDPARTYLIBS
Ben Soares [Tue, 2 Jul 2019 08:53:37 +0000 (09:53 +0100)]
JAL-3337 starting to add to THIRDPARTYLIBS

3 years agoJAL-3322 increase concurrent downloads in getdown
Ben Soares [Mon, 1 Jul 2019 23:07:23 +0000 (00:07 +0100)]
JAL-3322 increase concurrent downloads in getdown

3 years agoJAL-3333 removed unused variable
Ben Soares [Mon, 1 Jul 2019 15:40:37 +0000 (16:40 +0100)]
JAL-3333 removed unused variable

3 years agoJAL-3337 Added some more files to source tar.gz file
Ben Soares [Mon, 1 Jul 2019 15:19:50 +0000 (16:19 +0100)]
JAL-3337 Added some more files to source tar.gz file

3 years agoJAL-3337 added gzip compression. Archive filename now matches the ones in docroot...
Ben Soares [Mon, 1 Jul 2019 14:57:53 +0000 (15:57 +0100)]
JAL-3337 added gzip compression. Archive filename now matches the ones in docroot/source/ when using -PJALVIEW_VERSION=...

3 years agoJAL-3322 getdown jars with network timeouts applied
Ben Soares [Mon, 1 Jul 2019 14:35:30 +0000 (15:35 +0100)]
JAL-3322 getdown jars with network timeouts applied

3 years agoJAL-3332 Sensible default timeout values for network connections (8s connect_timeout...
Ben Soares [Mon, 1 Jul 2019 14:21:00 +0000 (15:21 +0100)]
JAL-3332 Sensible default timeout values for network connections (8s connect_timeout, 15s read_timeout)

3 years agoJAL-3333 using floats for smoother weighting
Ben Soares [Mon, 1 Jul 2019 11:27:01 +0000 (12:27 +0100)]
JAL-3333 using floats for smoother weighting

3 years agoJAL-3337 added sourceDist task to gradle. Creates tar file in builds/distribution...
Ben Soares [Mon, 1 Jul 2019 10:50:33 +0000 (11:50 +0100)]
JAL-3337 added sourceDist task to gradle.  Creates tar file in builds/distribution/jalview-source-JALVIEW_VERSION.tar

3 years agoJAL-3337 update to JAVA-11-README to state current Java 11 build
Ben Soares [Mon, 1 Jul 2019 10:49:37 +0000 (11:49 +0100)]
JAL-3337 update to JAVA-11-README to state current Java 11 build

3 years agoMerge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website
Ben Soares [Mon, 1 Jul 2019 09:17:31 +0000 (10:17 +0100)]
Merge branch 'develop' into task/JAL-3337_gradle_tasks_sourceDist_and_help2Website

update merging develop into this branch

3 years agoJAL-3333 Sorry couldn't resist adding a bit of weighting to the rotation
Ben Soares [Sat, 29 Jun 2019 12:48:25 +0000 (13:48 +0100)]
JAL-3333 Sorry couldn't resist adding a bit of weighting to the rotation

3 years agoJAL-3333 Title text now appears instantly. Altering speed of rotating logo depending...
Ben Soares [Sat, 29 Jun 2019 00:52:43 +0000 (01:52 +0100)]
JAL-3333 Title text now appears instantly. Altering speed of rotating logo depending on queuing or running status. Rotating logo now 'parks' rather than jumps at completion.

3 years agoMerge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceInfo_window_title_in_macOS_mojav...
Ben Soares [Fri, 28 Jun 2019 16:27:40 +0000 (17:27 +0100)]
Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceInfo_window_title_in_macOS_mojave' into develop

Merging in simple change from transparent image to white background and removing alpha channel in image model.

3 years agoJAL-3333 changed RGB model. Tested in mojave and Windows (works)
Ben Soares [Fri, 28 Jun 2019 16:27:03 +0000 (17:27 +0100)]
JAL-3333 changed RGB model.  Tested in mojave and Windows (works)

3 years agoJAL-3111 release notes for JAL-3330 JAL-3021 (tweak) and JAL-3333
Jim Procter [Fri, 28 Jun 2019 16:08:30 +0000 (17:08 +0100)]
JAL-3111 release notes for JAL-3330 JAL-3021 (tweak) and JAL-3333

3 years agoJAL-3337 start of a Tar task
Ben Soares [Fri, 28 Jun 2019 15:39:09 +0000 (16:39 +0100)]
JAL-3337 start of a Tar task

3 years agoMerge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceInfo_window_title_in_macOS_mojav...
Jim Procter [Fri, 28 Jun 2019 15:30:02 +0000 (16:30 +0100)]
Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceInfo_window_title_in_macOS_mojave' into develop

3 years agoJAL-3111 release notes for JAL-2820 JAL-2207
Jim Procter [Fri, 28 Jun 2019 15:29:07 +0000 (16:29 +0100)]
JAL-3111 release notes for JAL-2820 JAL-2207

3 years agoJAL-3111 backed out report of fix to JAL-3178 in release notes - since not fixed...
Jim Procter [Fri, 28 Jun 2019 15:28:43 +0000 (16:28 +0100)]
JAL-3111 backed out report of fix to JAL-3178 in release notes - since not fixed for 2.11

3 years agoJAL-3111 JAL-3340 JAL-3184 JAL-3338 new known defects
Jim Procter [Fri, 28 Jun 2019 15:27:55 +0000 (16:27 +0100)]
JAL-3111 JAL-3340 JAL-3184 JAL-3338 new known defects

3 years agoJAL-3333 Smooth rotation of image now too
Ben Soares [Fri, 28 Jun 2019 14:54:01 +0000 (15:54 +0100)]
JAL-3333 Smooth rotation of image now too

3 years agoMerge branch 'documentation/JAL-3111_release_211' into develop
Jim Procter [Fri, 28 Jun 2019 14:12:39 +0000 (15:12 +0100)]
Merge branch 'documentation/JAL-3111_release_211' into develop

3 years agoJAL-3111 final release date for 2.11.0
Jim Procter [Fri, 28 Jun 2019 14:12:09 +0000 (15:12 +0100)]
JAL-3111 final release date for 2.11.0

3 years agoJAL-3333 added height to rotating image preferred size
Ben Soares [Fri, 28 Jun 2019 14:05:19 +0000 (15:05 +0100)]
JAL-3333 added height to rotating image preferred size

3 years agoJAL-3330 apply Ensembl feature settings when showing crossrefs for alignment that... bug/JAL-3330_backpropagateEnsemblFeatureColours
Jim Procter [Fri, 28 Jun 2019 13:17:54 +0000 (14:17 +0100)]
JAL-3330 apply Ensembl feature settings when showing crossrefs for alignment that looks like it was from Ensembl

3 years agoJAL-3333 Replaced title text rendered in animated image with a titleText JLabel....
Ben Soares [Fri, 28 Jun 2019 13:09:32 +0000 (14:09 +0100)]
JAL-3333 Replaced title text rendered in animated image with a titleText JLabel. Moved image to WEST with preferred size and put titleText in CENTER.

3 years agoJAL-3335 much improved getdown background images
Ben Soares [Fri, 28 Jun 2019 11:05:32 +0000 (12:05 +0100)]
JAL-3335 much improved getdown background images

3 years agoJAL-3322 Progress bar status tweaks
Ben Soares [Fri, 28 Jun 2019 09:41:45 +0000 (10:41 +0100)]
JAL-3322 Progress bar status tweaks

3 years agoJAL-3322 getdown Application class fix
Ben Soares [Fri, 28 Jun 2019 09:37:58 +0000 (10:37 +0100)]
JAL-3322 getdown Application class fix

3 years agoMerge branch 'develop' into JAL-3322_getdown_speed_improvement
Ben Soares [Fri, 28 Jun 2019 09:33:48 +0000 (10:33 +0100)]
Merge branch 'develop' into JAL-3322_getdown_speed_improvement

merging in develop

3 years agoJAL-3322 corrected fix to convertBuildingMD task fail. removed debugging warnings...
Ben Soares [Fri, 28 Jun 2019 09:33:18 +0000 (10:33 +0100)]
JAL-3322 corrected fix to convertBuildingMD task fail. removed debugging warnings from getdown config backups

3 years agoMerge branch 'JAL-3322_getdown_speed_improvement' of https://source.jalview.org/git...
Ben Soares [Fri, 28 Jun 2019 07:59:34 +0000 (08:59 +0100)]
Merge branch 'JAL-3322_getdown_speed_improvement' of https://source.jalview.org/git/jalview into JAL-3322_getdown_speed_improvement

parallel dev

3 years agoJAL-3322 fixed convertBuildingMD task skipping in Windows
Ben Soares [Thu, 27 Jun 2019 22:29:54 +0000 (23:29 +0100)]
JAL-3322 fixed convertBuildingMD task skipping in Windows

3 years agoMerge branch 'JAL-3322_getdown_speed_improvement' into develop
Jim Procter [Thu, 27 Jun 2019 16:04:14 +0000 (17:04 +0100)]
Merge branch 'JAL-3322_getdown_speed_improvement' into develop

3 years agoJAL-3322 linksCheck task output.
Ben Soares [Thu, 27 Jun 2019 13:42:56 +0000 (14:42 +0100)]
JAL-3322 linksCheck task output.

3 years agoJAL-3322 Removed debug logging. Enabled backup install/getdown.txt config. Added...
Ben Soares [Thu, 27 Jun 2019 12:02:54 +0000 (13:02 +0100)]
JAL-3322 Removed debug logging. Enabled backup install/getdown.txt config. Added a dev doc diagram.

3 years agoJAL-3322 Once background displayed, allow asynchronous progress setting
Ben Soares [Wed, 26 Jun 2019 23:55:20 +0000 (00:55 +0100)]
JAL-3322 Once background displayed, allow asynchronous progress setting

3 years agoJAL-3111 fixed an anchor name link preventing linkCheck task from completing successfully
Ben Soares [Wed, 26 Jun 2019 23:25:48 +0000 (00:25 +0100)]
JAL-3111 fixed an anchor name link preventing linkCheck task from completing successfully

3 years agoMerge branch 'develop' into releases/Release_2_11_Branch
Jim Procter [Wed, 26 Jun 2019 17:26:31 +0000 (18:26 +0100)]
Merge branch 'develop' into releases/Release_2_11_Branch

3 years agoJAL-3111 sign the uninstaller script .. again
Jalview Development Admin [Wed, 26 Jun 2019 17:25:30 +0000 (18:25 +0100)]
JAL-3111 sign the uninstaller script .. again

3 years agoMerge branch 'improvement/JAL-3322_getdown_splashscreen_visibility' into develop
Jim Procter [Wed, 26 Jun 2019 17:20:55 +0000 (18:20 +0100)]
Merge branch 'improvement/JAL-3322_getdown_splashscreen_visibility' into develop
also note JAL-3320 addressed (groovy console opening with Java 11)

3 years agoMerge branch 'develop' into improvement/JAL-3322_getdown_splashscreen_visibility
Jim Procter [Wed, 26 Jun 2019 17:16:46 +0000 (18:16 +0100)]
Merge branch 'develop' into improvement/JAL-3322_getdown_splashscreen_visibility

3 years agoMerge branch 'develop' into releases/Release_2_11_Branch
Jim Procter [Wed, 26 Jun 2019 17:08:10 +0000 (18:08 +0100)]
Merge branch 'develop' into releases/Release_2_11_Branch