From 083196ff5de0d570ee70420a15aa6ff1c2dd03bf Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 9 Nov 2006 18:10:26 +0000
Subject: [PATCH] 1.1 compatible

---
 src/jalview/analysis/AlignmentSorter.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java
index c80c326..bf18b70 100755
--- a/src/jalview/analysis/AlignmentSorter.java
+++ b/src/jalview/analysis/AlignmentSorter.java
@@ -121,7 +121,7 @@ public class AlignmentSorter
             tmp.addElement(seqs[i]);
         }
 
-        algn.clear();
+        algn.removeAllElements();
         //User may have hidden seqs, then clicked undo or redo
         for (int i = 0; i < tmp.size(); i++)
         {
-- 
1.7.10.2