From 0ef644278439861e64ca6c5fe11f8fe9bc75a6a8 Mon Sep 17 00:00:00 2001
From: Jalview build Manager <jalview-dev@jalview.org>
Date: Mon, 13 Jan 2014 18:08:44 +0000
Subject: [PATCH] JAL-1400 signed applets generally run with all permissions
 since 2014

---
 examples/applets.html          |   10 +++++-----
 examples/embedded.html         |    2 +-
 examples/embeddedWJmol.html    |    2 +-
 examples/javascriptLaunch.html |    2 +-
 examples/linkedapplets_ng.html |    4 ++--
 5 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/examples/applets.html b/examples/applets.html
index 255f104..e228bc1 100755
--- a/examples/applets.html
+++ b/examples/applets.html
@@ -178,7 +178,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
       <td width="10%" valign="center"><applet
         code="jalview.bin.JalviewLite" width="140" height="35"
         archive="jalviewApplet.jar">
-<param name="permissions" value="sandbox">
+<param name="permissions" value="all-permissions">
        <param name="file" value="uniref50.fa">
         <param name="treeFile" value="ferredoxin.nw">
          <param name="userDefinedColour"
@@ -204,7 +204,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
       <td width="10%" valign="center"><applet
         code="jalview.bin.JalviewLite" width="140" height="35"
         archive="jalviewApplet.jar">
-<param name="permissions" value="sandbox">
+<param name="permissions" value="all-permissions">
        <param name="file" value="uniref50.fa">
         <param name="features" value="exampleFeatures.txt">
          <param name="showFeatureSettings" value="true">
@@ -228,7 +228,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
       <td width="10%" valign="center"><applet
         code="jalview.bin.JalviewLite" width="140" height="35"
         archive="jalviewApplet.jar,JmolApplet-12.2.4.jar">
-<param name="permissions" value="sandbox">
+<param name="permissions" value="all-permissions">
        <param name="file" value="uniref50.fa">
         <!-- <param name="debug" value="true">
                         -->
@@ -255,7 +255,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
       <td width="10%" valign="middle"><applet
         code="jalview.bin.JalviewLite" width="140" height="35"
         archive="jalviewApplet.jar">
-<param name="permissions" value="sandbox">
+<param name="permissions" value="all-permissions">
        <param name="file" value="jpred_msa.fasta">
         <param name="jnetfile" value="jpred_msa.seq.concise">
          <param name="defaultColour" value="Clustal">
@@ -288,7 +288,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
       <td width="10%" valign="center"><applet
         code="jalview.bin.JalviewLite" width="140" height="35"
         archive="jalviewApplet.jar">
-<param name="permissions" value="sandbox">
+<param name="permissions" value="all-permissions">
        <param name="file" value="RF00031_folded.stk">
         <param name="defaultColour" value="Purine/Pyrimidine">
          <param name="showAnnotation" value="true">
diff --git a/examples/embedded.html b/examples/embedded.html
index eda8a27..58dbb2d 100644
--- a/examples/embedded.html
+++ b/examples/embedded.html
@@ -169,7 +169,7 @@ var _gaq = _gaq || [];_gaq.push(["_setAccount", "UA-9060947-1"]);_gaq.push(["_tr
 </ul>
 <applet code="jalview.bin.JalviewLite"
 			width="756" height="560" archive="jalviewApplet.jar">
-			<param name="permissions" value="sandbox">
+			<param name="permissions" value="all-permissions">
       <param name="file" value="plantfdx.fa">
 			<param name="annotations" value="plantfdx.annotations">
 			<param name="features" value="plantfdx.features">
diff --git a/examples/embeddedWJmol.html b/examples/embeddedWJmol.html
index 24f7406..f6f8847 100644
--- a/examples/embeddedWJmol.html
+++ b/examples/embeddedWJmol.html
@@ -109,7 +109,7 @@ function genHref()
   linkUrl_2 : "http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$",
   APPLICATION_URL : "http://www.jalview.org/services/launchApp",
   PDBfile : "1gaq.txt FER1_MAIZE",
-  permissions : "sandbox"
+  permissions : "all-permissions"
  };
  jmolSetCallback("hoverCallback","_jmolhover");
   jmolSetCallback("pickCallback","_jmolpick");
diff --git a/examples/javascriptLaunch.html b/examples/javascriptLaunch.html
index d565ed2..9020e2b 100644
--- a/examples/javascriptLaunch.html
+++ b/examples/javascriptLaunch.html
@@ -242,7 +242,7 @@ function startJalview(aligURL,title,alwvar) {
 archive="jalviewApplet.jar" width="0" height="0">
 <param name="debug" value="true"/>
 <param name="showbutton" value="false"/>
-<param name="permissions" value="sandbox"/>
+<param name="permissions" value="all-permissions"/>
 </applet>
 
 
diff --git a/examples/linkedapplets_ng.html b/examples/linkedapplets_ng.html
index ef43184..fbb41ec 100644
--- a/examples/linkedapplets_ng.html
+++ b/examples/linkedapplets_ng.html
@@ -208,7 +208,7 @@ document.onclick = mclose;
  
     ,
     linkUrl_2 : "http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$",
-    permissions : 'sandbox',
+    permissions : 'all-permissions',
     APPLICATION_URL : "http://www.jalview.org/services/launchApp"
   };
  
@@ -243,7 +243,7 @@ document.onclick = mclose;
  
     ,
     linkUrl_2 : "http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$",
-    permissions : 'sandbox',
+    permissions : 'all-permissions',
     APPLICATION_URL : "http://www.jalview.org/services/launchApp"
   };
   deployJava.runApplet(attributes, parameters, '1.6');
-- 
1.7.10.2