From 3c2061bc480aa7b95051103203885be2008797f8 Mon Sep 17 00:00:00 2001 From: gmungoc Date: Wed, 2 Oct 2019 08:54:29 +0100 Subject: [PATCH] JAL-3253 JAL-3442 just comment tidying --- src/jalview/api/AlignViewportI.java | 8 +------- src/jalview/api/FeatureRenderer.java | 4 ++-- src/jalview/renderer/seqfeatures/FeatureRenderer.java | 3 --- 3 files changed, 3 insertions(+), 12 deletions(-) diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java index cec61f4..4016c75 100644 --- a/src/jalview/api/AlignViewportI.java +++ b/src/jalview/api/AlignViewportI.java @@ -199,13 +199,7 @@ public interface AlignViewportI extends ViewStyleI * Sets the colour scheme for the background alignment (as distinct from * sub-groups, which may have their own colour schemes). A null value is used * for no residue colour (white). - * - * BH Note: It is critical that any call to - * AlignViewportI.setGlobalColourScheme is followed closely, if not - * immediately, by a call to AlignPanel.repaint(true, true) so that the - * overview is updated. When that happens, the sequence overview color caches - * are cleared. - * + * * @param cs */ void setGlobalColourScheme(ColourSchemeI cs); diff --git a/src/jalview/api/FeatureRenderer.java b/src/jalview/api/FeatureRenderer.java index 6caa1c7..404c497 100644 --- a/src/jalview/api/FeatureRenderer.java +++ b/src/jalview/api/FeatureRenderer.java @@ -125,7 +125,7 @@ public interface FeatureRenderer List getFeatureGroups(); /** - * get groups that are visible/invisible -- JalviewLite only? + * get groups that are visible/invisible * * @param visible * @return @@ -133,7 +133,7 @@ public interface FeatureRenderer List getGroups(boolean visible); /** - * Set visibility for a list of groups -- JalviewLite only? + * Set visibility for a list of groups * * @param toset * @param visible diff --git a/src/jalview/renderer/seqfeatures/FeatureRenderer.java b/src/jalview/renderer/seqfeatures/FeatureRenderer.java index cccd916..9751e0b 100644 --- a/src/jalview/renderer/seqfeatures/FeatureRenderer.java +++ b/src/jalview/renderer/seqfeatures/FeatureRenderer.java @@ -300,9 +300,6 @@ public class FeatureRenderer extends FeatureRendererModel Graphics2D g2 = (Graphics2D) g; g2.setComposite(AlphaComposite.getInstance(AlphaComposite.SRC_OVER, transparency)); - // ((Graphics2D) g).setComposite( - // AlphaComposite.getInstance(AlphaComposite.SRC_OVER, - // transparency)); } Color drawnColour = null; -- 1.7.10.2