From 775f6ea659bce2510739e5a5f8bd3f156662d6df Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Tue, 29 Nov 2016 09:07:25 +0000
Subject: [PATCH] JAL-2344 FileFormat.isStructureFile replaces
 StructureFile.isStructureFile

---
 src/jalview/gui/AlignFrame.java   |   11 +++--------
 src/jalview/io/StructureFile.java |   22 ----------------------
 2 files changed, 3 insertions(+), 30 deletions(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 3644b28..8ca9085 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -75,7 +75,6 @@ import jalview.io.JalviewFileChooser;
 import jalview.io.JalviewFileView;
 import jalview.io.JnetAnnotationMaker;
 import jalview.io.NewickFile;
-import jalview.io.StructureFile;
 import jalview.io.TCoffeeScoreFile;
 import jalview.jbgui.GAlignFrame;
 import jalview.schemes.Blosum62ColourScheme;
@@ -147,7 +146,6 @@ import javax.swing.JInternalFrame;
 import javax.swing.JLayeredPane;
 import javax.swing.JMenu;
 import javax.swing.JMenuItem;
-import javax.swing.JOptionPane;
 import javax.swing.JRadioButtonMenuItem;
 import javax.swing.JScrollPane;
 import javax.swing.SwingUtilities;
@@ -4899,13 +4897,10 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
               {
                 type = null;
               }
-              if (type != null)
+              if (type != null && type.isStructureFile())
               {
-                if (FileFormat.PDB.equals(type) || FileFormat.MMCif.equals(type))
-                {
-                  filesmatched.add(new Object[] { file, protocol, mtch });
-                  continue;
-                }
+                filesmatched.add(new Object[] { file, protocol, mtch });
+                continue;
               }
             }
             // File wasn't named like one of the sequences or wasn't a PDB file.
diff --git a/src/jalview/io/StructureFile.java b/src/jalview/io/StructureFile.java
index d39ab38..7fe17c8 100644
--- a/src/jalview/io/StructureFile.java
+++ b/src/jalview/io/StructureFile.java
@@ -42,14 +42,8 @@ import MCview.PDBChain;
 
 public abstract class StructureFile extends AlignFile
 {
-
   private String id;
 
-  public enum StructureFileType
-  {
-    PDB, MMCIF, MMTF
-  };
-
   private PDBEntry.Type dbRefType;
 
   /**
@@ -488,20 +482,4 @@ public abstract class StructureFile extends AlignFile
   {
     this.pdbIdAvailable = pdbIdAvailable;
   }
-
-  public static boolean isStructureFile(String fileType)
-  {
-    if (fileType == null)
-    {
-      return false;
-    }
-    for (StructureFileType sfType : StructureFileType.values())
-    {
-      if (sfType.name().equalsIgnoreCase(fileType))
-      {
-        return true;
-      }
-    }
-    return false;
-  }
 }
-- 
1.7.10.2