From 855af27bbb88788ac9c1ee9872a43fbb333ae380 Mon Sep 17 00:00:00 2001 From: gmungoc Date: Thu, 28 Jan 2021 16:56:55 +0000 Subject: [PATCH] JAL-3806 more lax allowance (3 positions) for stop codon --- src/jalview/datamodel/AlignedCodonFrame.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/jalview/datamodel/AlignedCodonFrame.java b/src/jalview/datamodel/AlignedCodonFrame.java index 6faf7a6..6ccc0fc 100644 --- a/src/jalview/datamodel/AlignedCodonFrame.java +++ b/src/jalview/datamodel/AlignedCodonFrame.java @@ -171,8 +171,8 @@ public class AlignedCodonFrame if (length != -1) { - // add 1 to mapped length to allow for a mapped stop codon - if (length + 1 >= (mend - mstart + 1)) + // add 3 to mapped length to allow for a mapped stop codon + if (length + 3 >= (mend - mstart + 1)) { return true; } -- 1.7.10.2