From 9f82624d3cff5845a592d9f8ee930b8450e7a763 Mon Sep 17 00:00:00 2001 From: tcofoegbu Date: Mon, 11 Apr 2016 11:48:40 +0100 Subject: [PATCH] Restored auto-deleted file from commit: ad54c1ae5bc1b931a6a0cd0b914c19cbc27fe12d --- examples/testdata/simpleGff3.gff | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 examples/testdata/simpleGff3.gff diff --git a/examples/testdata/simpleGff3.gff b/examples/testdata/simpleGff3.gff new file mode 100644 index 0000000..34b64ee --- /dev/null +++ b/examples/testdata/simpleGff3.gff @@ -0,0 +1,27 @@ +##gff-version 2 +# exonerate output in gff2 format; not gff3 because +# - 'similarity' is not a Sequence Ontology term +# - attributes' name/values are separated by space ' ' not equals '=' +##source-version exonerate:protein2genome:local 2.2.0 +##date 2015-01-16 +##type DNA +# +# exonerate run with --showtargetgff generates 'features on the target' i.e. mappings to the query +# tab-delimited +# seqname source feature start end score strand frame attributes +# +seq1 exonerate:protein2genome:local gene 8 11 3652 - . gene_id 0 ; sequence seq2 ; gene_orientation . +seq1 exonerate:protein2genome:local cds 9 11 . - . +seq1 exonerate:protein2genome:local exon 9 11 . - . insertions 3 ; deletions 6 +#seq1 exonerate:protein2genome:local similarity 8 11 3652 - . alignment_id 0 ; Query seq2 ; Align 11 1 3 +seq1 exonerate:protein2genome:local similarity 9 11 3652 - . alignment_id 0 ; Query seq2 ; Align 11 1 3 +# +# appending FASTA sequences is strictly a GFF3 format feature +# but Jalview is able to handle this mixture of GFF2 / GFF3 :-) +# +##FASTA +>seq1 +ACTACGACACGACGACGACGACG +>seq2 +CDEQEATGTQDAQEQAQC + -- 1.7.10.2