From a7f9598fbdcd7fbeac3fc6f24b41e39e344afc55 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Thu, 12 May 2016 12:24:50 +0100 Subject: [PATCH] JAL-2103 fallback to returning trimmed profile if full width MSA not available --- src/jalview/ws/jws1/JPredThread.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/jalview/ws/jws1/JPredThread.java b/src/jalview/ws/jws1/JPredThread.java index da53ef5..ff65d05 100644 --- a/src/jalview/ws/jws1/JPredThread.java +++ b/src/jalview/ws/jws1/JPredThread.java @@ -109,7 +109,7 @@ class JPredThread extends JWS1Thread implements WSClientI getGapChar(), SequenceInfo, this.msa != null, this.predMap, result.getPredfile(), result.getAligfile(), - getFullAlignmentSource()); + (msa == null) ? getFullAlignmentSource() : null); return resview; // Alignment, ColumnSelection } -- 1.7.10.2