From cf78dc7e8c37a03da8e7e396fec7e7ec54666847 Mon Sep 17 00:00:00 2001 From: gmungoc Date: Fri, 27 Jan 2017 15:46:02 +0000 Subject: [PATCH] JAL-2379 commented out code removed --- src/jalview/math/Matrix.java | 4 ---- src/jalview/viewmodel/PCAModel.java | 11 ----------- 2 files changed, 15 deletions(-) diff --git a/src/jalview/math/Matrix.java b/src/jalview/math/Matrix.java index ee74b9b..de0bf77 100755 --- a/src/jalview/math/Matrix.java +++ b/src/jalview/math/Matrix.java @@ -267,7 +267,6 @@ public class Matrix implements MatrixI { for (k = 1; k <= l; k++) { - // double v = Math.abs(value[i - 1][k - 1]); double v = Math.abs(getValue(i - 1, k - 1)); scale += v; } @@ -513,9 +512,6 @@ public class Matrix implements MatrixI for (k = 1; k <= n; k++) { - // f = value[k - 1][i]; - // value[k - 1][i] = (s * value[k - 1][i - 1]) + (c * f); - // value[k - 1][i - 1] = (c * value[k - 1][i - 1]) - (s * f); f = getValue(k - 1, i); setValue(k - 1, i, (s * getValue(k - 1, i - 1)) + (c * f)); setValue(k - 1, i - 1, (c * getValue(k - 1, i - 1)) - (s * f)); diff --git a/src/jalview/viewmodel/PCAModel.java b/src/jalview/viewmodel/PCAModel.java index cd8eb15..3b6829e 100644 --- a/src/jalview/viewmodel/PCAModel.java +++ b/src/jalview/viewmodel/PCAModel.java @@ -82,17 +82,6 @@ public class PCAModel ii++; } - // comps is not used - commenting out - // double[][] comps = new double[ii][]; - // - // for (int i = 0; i < ii; i++) - // { - // if (pca.getEigenvalue(i) > 1e-4) - // { - // comps[i] = pca.component(i); - // } - // } - top = pca.getM().height() - 1; points = new Vector(); -- 1.7.10.2