From d701b2130b4363f33b8ecd426fd40d99241a190e Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Wed, 25 Aug 2010 14:14:31 +0000
Subject: [PATCH] init Jmol with 'SmarterJmolAdapter'

---
 src/jalview/gui/AppJmol.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index 9e1e35a..6312cb1 100644
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -187,7 +187,7 @@ public class AppJmol extends GStructureViewer implements Runnable,
     this.getContentPane().add(renderPanel, java.awt.BorderLayout.CENTER);
     jalview.gui.Desktop.addInternalFrame(this, jmb.getViewerTitle(),
             getBounds().width, getBounds().height);
-    jmb.allocateViewer(renderPanel, "", null, null, "");
+    jmb.allocateViewer(renderPanel, true, "", null, null, "");
     jmb.newJmolPopup(true, "Jmol", true);
     jmb.evalStateCommand(command);
     jmb.setFinishedInit(true);
-- 
1.7.10.2