From e6dfb718d73b9398701aba29e8c8ffb20bad2b26 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Tue, 26 Apr 2016 17:33:02 +0100 Subject: [PATCH] JAL-2079 use new service to retrieve Rfam Seed alignment --- src/jalview/ws/dbsources/RfamSeed.java | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/src/jalview/ws/dbsources/RfamSeed.java b/src/jalview/ws/dbsources/RfamSeed.java index 8a6c25f..a3b6294 100644 --- a/src/jalview/ws/dbsources/RfamSeed.java +++ b/src/jalview/ws/dbsources/RfamSeed.java @@ -43,11 +43,16 @@ public class RfamSeed extends Rfam implements DbSourceProxy @Override protected String getXFAMURL() { - return "http://rfam.xfam.org/family/alignment/download/format?alnType=seed&nseLabels=0&format=stockholm&acc="; + return "http://rfam.xfam.org/family/"; // Janelia Farms url // "http://rfam.janelia.org/cgi-bin/getalignment?type=seed&fmt=stockholm&acc="; } + @Override + public String getXFAMURLSUFFIX() + { + return "/alignment"; + } /* * (non-Javadoc) * -- 1.7.10.2