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Merge branch 'bug/JAL-3806_mappingCoversSequence' into releases/Release_2_11_1_Branch
2021-02-26 Jim ProcterMerge branch 'bug/JAL-3806_mappingCoversSequence' into...
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2021-02-26 Jim ProcterJAL-3816 JAL-3814 JAL-3813 JAL-3812 JAL-3811 JAL-3818...
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2021-02-24 Jim ProcterMerge branch 'bug/JAL-3818_jmolDeadlock' into releases...
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2021-02-24 Jim ProcterMerge branch 'releases/Release_2_11_1_4_debianpatches...
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2021-02-07 Jim ProcterJAL-3816 bump version number and cut release notes
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2021-02-07 Jim ProcterJAL-3815 default /etc/jalview_properties under utils...
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2021-02-05 Jim ProcterMerge branch 'task/JAL-3521_Slimmed_down_build.gradle_for_de...
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2021-02-05 Jim ProcterMerge branch 'releases/Release_2_11_1_4_debianpatches...
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2021-02-05 Jim ProcterJAL-3814 don’t automatically launch the news browser...
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2021-02-05 Jim ProcterJAL-3813 NOIDENTIFIERSSERVICE preference disables jalview...
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2021-02-05 Jim ProcterJAL-3812 new argument ‘-nohtmltemplates’ and user preference...
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2021-02-05 Jim ProcterJAL-3811 document SHOW_JWS2_SERVICES user preference...
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2021-02-05 Jim ProcterJAL-3814 NONEWS property
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2020-10-29 Jim ProcterJAL-3766 what’s new and release notes for 2.11.1.3
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2020-10-29 Jim ProcterJAL-3759 fix compilation error for test
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2020-10-29 Jim ProcterJAL-3766 release notes for JAL-3759
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2020-10-29 Jim Procter JAL-3759 exclude hidden columns when processing...
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2020-10-29 Jim ProcterMerge branch 'documentation/JAL-3766_relnotes' into...
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2020-10-29 Jim ProcterJAL-3766 release notes for JAL-3765 JAL-3763 JAL-3760...
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2020-10-29 Jim ProcterMerge branch 'patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3...
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2020-10-28 Jim ProcterJAL-3725 fix tests for EMBLFlatFile parser when mapping...
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2020-10-28 Jim ProcterJAL-3725 patch EMBL flat file to exclude stop codon...
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2020-10-28 Jim ProcterMerge branch 'bug/JAL-3760_protsTreatedAsNucleotides...
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2020-10-27 Jim ProcterJAL-3768 noticed failure of test when run as part of...
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2020-10-27 Jim ProcterJAL-3700 JAL-3748 JAL-3763 don’t add stop codon via...
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2020-10-27 Jim Procterupdate test for JAL-3763 redact shared DS sequences...
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2020-10-21 Jim ProcterJAL-3766 release notes for JAL-3611 JAL-3765
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2020-10-21 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of http...
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2020-10-21 Jim ProcterMerge branch 'bug/JAL-3765_Find_bugs_in_21112' into...
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2020-10-21 Jim ProcterJAL-3766 cut new patch release
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2020-10-20 Jim ProcterJAL-3765 fix test
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2020-10-20 Jim Procterfix for JAL-3765
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2020-10-19 Jim ProcterJAL-3765 simple test that findAll finds all matches...
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2020-09-29 Jim ProcterJAL-3760 fix tests for changed behaviour
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2020-09-29 Jim ProcterJAL-3760 refactor nucleotide proportion test to per...
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2020-09-25 Jim ProcterJAL-3758 tweak what’s new for 2.11.1.2!
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2020-09-25 Jim ProcterJAL-3758 release Fri 25th Sep
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2020-09-25 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of http...
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2020-09-24 Jim ProcterJAL-3758 2.11.1.2 patch release notes and version bump
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2020-09-24 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
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2020-09-23 Jim ProcterJAL-3748 not testing for sequence’s containment in...
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2020-09-23 Jim ProcterJAL-3748 fix compilation error
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2020-09-23 Jim ProcterJAL-3748 maximal test for JAL-3748 using covid19 CDS...
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2020-09-23 Jim ProcterJAL-3748 more tests verifying reconstruction of AlignemntVie...
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2020-09-23 Jim ProcterJAL-3748 reusable assert to trace specific issues with...
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2020-09-23 Jim ProcterJAL-3748 allow AlignedCodonFrame.covers to optionally...
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2020-09-22 Jim ProcterJAL-3748 test data for SplitFrameTest
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2020-09-22 Jim ProcterJAL-3748 don’t trash start/end on SequenceI reconstructed...
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2020-09-22 Jim ProcterJAL-3748 simple test for SeqCigar preservation of start...
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2020-09-22 Jim ProcterJAL-3748 additional asserts to verify start/end after...
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2020-09-17 Jim ProcterJAL-3675 release notes for JAL-3750 JAL-3751
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2020-09-17 Jim ProcterMerge branch 'patch/JAL-3750_JAL-3741_https_patch'...
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2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
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2020-09-17 Jim ProcterJAL-3750 parse protocol before checking if argument...
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2020-09-17 Jim ProcterJAL-3675 patch release date 17th September 2020
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2020-09-16 Jim ProcterJAL-3748 preserve sequence IDs from original alignment...
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2020-09-16 Jim ProcterJAL-3748 recover complement alignment from complement...
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2020-09-16 Jim ProcterJAL-3748 make findAlignedSequence require mapped from...
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2020-09-16 Jim ProcterJAL-3748 pass a list to findAlignedSequence to return...
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2020-09-16 Jim ProcterJAL-3700 JAL-3748 use AlignedCodonFrame.covers(seq...
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2020-09-16 Jim ProcterJAL-3700 JAL-3748 AlignedCodonFrame.covers(seq,true...
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2020-09-16 Jim ProcterMerge branch 'failingTest/JAL-3748_reconstructCDSafterProtei...
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2020-09-16 Jim ProcterJAL-3748 store an AlignmentView for the complement...
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2020-09-15 Jim ProcterJAL-3675 logged JAL-3748 as known defect
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2020-09-15 Jim ProcterJAL-3765 JAL-3718 release notes
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2020-09-15 Jim ProcterMerge branch 'patch/JAL-3718_fixed_getdown_patched_for_Relea...
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2020-09-15 Jim ProcterJAL-3675 typo in release notes :(
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2020-09-15 Jim ProcterJAL-3675 update release date and release notes for...
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2020-09-03 Jim ProcterJAL-3675 update release date and release notes for...
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2020-09-03 Jim ProcterMerge branch 'improvement/JAL-3280_Migrate_the_VersionChecke...
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2020-09-03 Jim ProcterJAL-3675 whats new, logging and release notes tidying...
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2020-09-03 Jim ProcterJAL-3676 rework logging docs.
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2020-09-03 Jim ProcterMerge branch 'bug/JAL-3718_Getdown_does_not_autoupdate_corre...
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2020-09-03 Jim ProcterJAL-3676 remove mention of Castor
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2020-09-03 Jim ProcterJAL-3675 tweak release notes for JAL-3667, JAL-3702
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2020-09-03 Jim ProcterJAL-3675 update sequence fetcher service documentation...
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2020-08-31 Jim ProcterJAL-3680 merged description of individual cursor key...
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2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor...
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2020-08-25 Jim Procterreport JAL-3127 as known defect (fix targeted for 2...
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2020-08-25 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
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2020-08-21 Jim ProcterJAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615...
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2020-08-17 Jim ProcterJAL-3675 release notes for JAL-3691
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2020-08-17 Jim ProcterMerge branch 'patch/JAL-3691_No_score_models_available...
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2020-08-17 Jim ProcterJAL-3675 JAL-3561 documented in release notes
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2020-08-17 Jim ProcterJAL-3675 report JAL-3702 as known defect
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2020-08-17 Jim ProcterMerge branch 'patch/JAL-3561_JAL-3660_fileformatexport_CLI...
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2020-08-17 Jim ProcterJAL-3712 fix typos for rebuilding/updating getdown...
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2020-08-17 Jim ProcterJAL-3490 JAL-3675 release notes, update Find dialog...
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2020-08-17 Jim ProcterMerge branch 'patch/Release_2_11_1_Branch_patch_JAL...
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2020-08-17 Jim ProcterJAL-3675 JAL-3597 release notes
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2020-08-17 Jim ProcterMerge branch 'patch/JAL-3597_for_Release_2_11_1_Branch...
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2020-08-13 Jim ProcterJAL-3675 brought forward patch to build.gradle for...
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2020-08-13 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of http...
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2020-08-12 Jim ProcterJAL-3675 added JAL-3576 as known defect (colocated...
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2020-08-11 Jim ProcterJAL-3675 fix issue attribution for JAL-3667 release...
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2020-08-11 Jim ProcterJAL-3675 update release notes for JAL-3673 and tested...
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2020-08-11 Jim ProcterJAL-3673 make sure font metrics are updated if dealing...
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2020-08-11 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into releases...
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2020-08-10 Jim ProcterJAL-3691 toUpperCase(Locale.ROOT) for all standard...
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2020-08-10 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' into...
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