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jalview.git
2022-07-24 Ben SoaresJAL-4034 add round corners to 3DB confirmation button... commit | commitdiff | tree | snapshot
2022-07-15 Ben SoaresJAL-4034 Use the new non-modal JDialog for 3DBeacons... commit | commitdiff | tree | snapshot
2022-07-15 Ben SoaresJAL-4034 Allow request for non-modal JDialog, which... commit | commitdiff | tree | snapshot
2022-07-12 Ben SoaresJAL-4034 change to jalview property name commit | commitdiff | tree | snapshot
2022-07-12 Ben SoaresJAL-4034 showConfirmDialog works for both desktop and... commit | commitdiff | tree | snapshot
2022-07-11 Ben SoaresJAL-4034 Non-blocking 3D Beacons query after warning... commit | commitdiff | tree | snapshot
2022-07-11 Ben SoaresJAL-4034 allow a jalview_property to set the threshold... commit | commitdiff | tree | snapshot
2022-07-04 Jim ProcterJAL-4034 fix #3 change uniprot ref fetch dialog to... commit | commitdiff | tree | snapshot
2022-07-04 Jim ProcterJAL-4034 Fix #2 show an icon and a button to press... commit | commitdiff | tree | snapshot
2022-07-04 Jim ProcterJAL-4034 fix 1 - reword button commit | commitdiff | tree | snapshot
2022-07-04 Jim ProcterJAL-4012 updated release date and whats new for 2.11.2.3 commit | commitdiff | tree | snapshot
2022-07-01 Jim ProcterJAL-4012 tweak release notes wording for legacy.uniprot commit | commitdiff | tree | snapshot
2022-07-01 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin... commit | commitdiff | tree | snapshot
2022-07-01 Jim ProcterJAL-4036 JAL-4012 note about Uniprot FTS workaround... commit | commitdiff | tree | snapshot
2022-06-30 Jim ProcterJAL-4036 use the legacy endpoint (and report the FTS... commit | commitdiff | tree | snapshot
2022-06-28 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... commit | commitdiff | tree | snapshot
2022-06-28 Ben SoaresJAL-1988 Don't put Quit in the File menu if there's... commit | commitdiff | tree | snapshot
2022-06-23 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... commit | commitdiff | tree | snapshot
2022-06-23 Ben SoaresJAL-1988 Check for setHandler capability to avoid About... commit | commitdiff | tree | snapshot
2022-06-17 Ben SoaresJAL-3027 Avoid FlatLAF Desktop class is JalviewJS commit | commitdiff | tree | snapshot
2022-06-15 Jim ProcterJAL-4012 release notes for JAL-1988,JAL-3416 commit | commitdiff | tree | snapshot
2022-06-15 Jim ProcterJAL-1988 JAL-3416 avoid unnecessary static flag commit | commitdiff | tree | snapshot
2022-06-15 Jim ProcterJAL-3418 JAL-1988 don’t need java version check anymore commit | commitdiff | tree | snapshot
2022-06-15 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-1988 Hack to ensure Quit dialog box is moved to... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-1988 Moved APQHandlers to jalview.jbgui and called... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresMerge branch 'develop' into improvement/JAL-1988+JAL... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-4004 Fix missing whatsNew.html when not building... commit | commitdiff | tree | snapshot
2022-06-13 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_flatlaf_osx... commit | commitdiff | tree | snapshot
2022-06-13 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-3416 remove flat as default for linux commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-1988 JAL-3416 Using the flatlaf-extras About, Prefe... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-3416 Added some mac specific FlatLAF settings.... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-3416 updated FlatLAF libraries to 2.3. Added the... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4012 - JAL-4020 release notes and a bit of ‘trouble... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterMerge branch 'bug/JAL-4020_add_pymolwin_paths' into... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4004 add the autogenerated whatsNew.html and releas... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4014 release notes for JAL-4026 patches commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 increase timeouts for command line ops commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 ignore StructureSelectionManager events if... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 always wait 50ms before checking if the calcul... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after... commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterJAL-4014 release notes for JAL-4023 and JAL-4024 commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterMerge branch 'improvement/JAL-4023_snotation_for_trees... commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterMerge branch 'patch/JAL-4024_jumpScrollHang' into develop commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterJAL-4012 what’s new and release notes (in the new style... commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterJAL-4004 delete temporary file mistakenly checked in commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterMerge branch 'issues/JAL-3553+JAL-3978+JAL-3989+JAL... commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterJAL-4024 only render partially when new view overlaps... patch/JAL-4024_jumpScrollHang commit | commitdiff | tree | snapshot
2022-06-07 Ben SoaresJAL-4020 class formatting commit | commitdiff | tree | snapshot
2022-06-07 Ben SoaresJAL-4020 added the \Scripts\pymol.exe. to the pathList commit | commitdiff | tree | snapshot
2022-06-06 Ben SoaresJAL-4020 Added the +2 arg for PyMOLWin.exe allowing... commit | commitdiff | tree | snapshot
2022-06-06 Ben SoaresJAL-4020 updated tests commit | commitdiff | tree | snapshot
2022-06-06 Ben SoaresJAL-4020 class reformatting commit | commitdiff | tree | snapshot
2022-06-06 Ben SoaresJAL-4020 Added path search for global installation... commit | commitdiff | tree | snapshot
2022-06-06 Jim ProcterJAL-4023 use %g for distances (scientific notation... improvement/JAL-4023_snotation_for_trees commit | commitdiff | tree | snapshot
2022-06-06 Ben SoaresJAL-4020 Added search for PyMOLWinWithConsole.bat ... commit | commitdiff | tree | snapshot
2022-06-06 Jim ProcterJAL-4023 store distances as doubles commit | commitdiff | tree | snapshot
2022-05-12 Ben SoaresMerge branch 'develop' into issues/JAL-3553+JAL-3978... issues/JAL-3553+JAL-3978+JAL-3989+JAL-4004_merged_with_develop commit | commitdiff | tree | snapshot
2022-05-11 Jim ProcterMerge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into... commit | commitdiff | tree | snapshot
2022-05-11 Jim ProcterJAL-4012 JAL-4008 release notes for Jalview 2.11.2.3 commit | commitdiff | tree | snapshot
2022-05-10 Jim ProcterJAL-4008 update jabaws client to 2.2.1 - definitely... patch/JAL-4008_jabaws_2_2_1_patch commit | commitdiff | tree | snapshot
2022-05-10 Jalview Development... Merge branch 'releases/Release_2_11_2_Branch' Release_2_11_2_2 commit | commitdiff | tree | snapshot
2022-05-10 Ben SoaresJAL-4004 cosmetic improvements for Java documentation... commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-4004 gradle task releasesTemplates now part of... commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-4004 working templates and generated whatsNew.html... commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-4004 remove stray empty h3 headers commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-4004 gradle releasesTemplates builds releases.html commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-4004 Temporary mechanism to add JalviewJS link... commit | commitdiff | tree | snapshot
2022-05-09 Ben SoaresJAL-3989 Code tidying, added JVL_HEADER for older versi... commit | commitdiff | tree | snapshot
2022-05-05 Ben SoaresJAL-4004 Now generating hugo files from help/markdown/... commit | commitdiff | tree | snapshot
2022-05-04 Ben SoaresJAL-4004 existing releases-VERSION.md files and release... commit | commitdiff | tree | snapshot
2022-05-04 Ben SoaresJAL-4004 locations for markdown to go into whatsnew... commit | commitdiff | tree | snapshot
2022-05-03 Ben SoaresJAL-3989 improved parsing and formatting now using... commit | commitdiff | tree | snapshot
2022-05-03 Ben SoaresJAL-1544 minor errors in releases.html and one missing... commit | commitdiff | tree | snapshot
2022-04-29 Ben SoaresJAL-3989 small improvements to output markdown commit | commitdiff | tree | snapshot
2022-04-28 Ben SoaresJAL-3989 add in issue shortcodes to the archive version... commit | commitdiff | tree | snapshot
2022-04-27 Ben SoaresJAL-1544 version number typo, probably copy and paste commit | commitdiff | tree | snapshot
2022-04-27 Ben SoaresJAL-3989 Populate template files for hugo build: archiv... commit | commitdiff | tree | snapshot
2022-04-25 Ben SoaresJAL-3989 moved getdown build dirs to build/website... commit | commitdiff | tree | snapshot
2022-04-25 Ben SoaresJAL-3989 Independent creation of JSON installer sections commit | commitdiff | tree | snapshot
2022-04-25 Ben SoaresJAL-3978 clean up unnecessary local variables for JALVI... commit | commitdiff | tree | snapshot
2022-04-22 Ben SoaresJAL-3989 Changed to using com.google.common.hash for... commit | commitdiff | tree | snapshot
2022-04-21 Ben SoaresMerge branch 'develop' into merge/JAL-3978+JAL-3553... commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterJAL-3992 bump version and report updates in 2.11.2... commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterMerge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into... commit | commitdiff | tree | snapshot
2022-04-19 Jim ProcterMerge branch 'bug/JAL-3365_extendedDSSP_via_stockholm... commit | commitdiff | tree | snapshot
2022-04-18 Jim ProcterJAL-3997 check for tooltip being null before checking... bug/JAL-3997_NPE_in_wrapped_mode commit | commitdiff | tree | snapshot
2022-04-18 Jim ProcterMerge branch 'task/JAL-3992_update_docs' into bug/JAL... bug/JAL-3365_extendedDSSP_via_stockholm commit | commitdiff | tree | snapshot
2022-04-18 Jim ProcterJAL-3992 fix path commit | commitdiff | tree | snapshot
2022-04-16 Jim ProcterJAL-3365 expand range of allowed DSSP secondary structu... commit | commitdiff | tree | snapshot
2022-04-13 Jim ProcterJAL-3992 shift+arrow to jump to next gap/residue in... commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3990 release notes and what’s new Release_2_11_2_1 commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3981 patch tests and remove errant imports commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3990 gradle spotlessApply commit | commitdiff | tree | snapshot
2022-04-05 Jim ProcterJAL-3990 release notes for 2.11.2.1 patch release commit | commitdiff | tree | snapshot
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