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jalview.git
2015-04-27 tcofoegbuJAL-1714 improved the new PDB Sequence fetcher by enabl... Pre_R29_develop commit | commitdiff | tree | snapshot
2015-04-21 tcofoegbuResolved diffs from 2.8.3 commit | commitdiff | tree | snapshot
2015-03-31 gmungocJAL-1681 ensure cDNA consensus computed on startup... commit | commitdiff | tree | snapshot
2015-03-31 gmungocJAL-1544 "true of false" -> "true or false" commit | commitdiff | tree | snapshot
2015-03-31 gmungocJAL-1264 reinstated 'show annotations' menu item (and... commit | commitdiff | tree | snapshot
2015-03-30 gmungocJAL-1264 fix broken applet build dependencies commit | commitdiff | tree | snapshot
2015-03-25 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-03-25 gmungocJAL-1264 adding show/hide annotation options to applet commit | commitdiff | tree | snapshot
2015-03-25 tcofoegbuMerge branch 'features/JAL-1667_PDBe_Search_API' into... commit | commitdiff | tree | snapshot
2015-03-25 tcofoegbuJAL-1667 clean up commented codes in PopupMenu.java... commit | commitdiff | tree | snapshot
2015-03-25 tcofoegbuMerge commit commit | commitdiff | tree | snapshot
2015-03-25 tcofoegbuJAL-1668 Tab for summary config, auto refresh after... commit | commitdiff | tree | snapshot
2015-03-23 gmungocJAL-1681 (import reorder only) commit | commitdiff | tree | snapshot
2015-03-23 gmungocJAL-845 restore SplitFrame size from project; enable... commit | commitdiff | tree | snapshot
2015-03-23 gmungocStringBuffer --> StringBuilder commit | commitdiff | tree | snapshot
2015-03-23 gmungocMerge branch 'features/sequenceFeatureRefactor' into... commit | commitdiff | tree | snapshot
2015-03-19 tcofoegbuJAL-1668 finally clean up commit | commitdiff | tree | snapshot
2015-03-19 gmungocJAL-845 fix bug in 3-to-1 scaling of protein from cDNA commit | commitdiff | tree | snapshot
2015-03-18 gmungocJAL-1680 small tidy commit | commitdiff | tree | snapshot
2015-03-18 gmungocJAL-845 adjust both sides of split frame when changing... commit | commitdiff | tree | snapshot
2015-03-18 gmungocJAL-1675 Chimera highlight side-chain; timeout added... commit | commitdiff | tree | snapshot
2015-03-18 gmungocMerge hack/JAL-1617 fake DBRef to develop commit | commitdiff | tree | snapshot
2015-03-18 gmungocJAL-845 map 'STOP' codons correctly commit | commitdiff | tree | snapshot
2015-03-18 Charles OfoegbuJAL-1668 house keeping commit | commitdiff | tree | snapshot
2015-03-18 Charles OfoegbuJAL-1668 added PDBDocFieldPreference for configuring... commit | commitdiff | tree | snapshot
2015-03-17 gmungocJAL-1687 ignore case when determining if sequence match... commit | commitdiff | tree | snapshot
2015-03-17 gmungocJAL-845 ensure cDNA consensus scales with font size commit | commitdiff | tree | snapshot
2015-03-17 gmungocJAL-845 provide a moveable divider for SplitFrame ... commit | commitdiff | tree | snapshot
2015-03-16 gmungocJAL-845 tweaks and bug fixes for split frame view commit | commitdiff | tree | snapshot
2015-03-16 Charles OfoegbuJAL-1668 added validation for manual entry of pdb struc... commit | commitdiff | tree | snapshot
2015-03-15 Charles OfoegbuJAL-1667 updated test and internationalization messages commit | commitdiff | tree | snapshot
2015-03-13 gmungocJAL-845 refinements + tests for making mappings between... commit | commitdiff | tree | snapshot
2015-03-13 gmungocJAL-1686 @Override and/or TODO added to equals(Object... commit | commitdiff | tree | snapshot
2015-03-13 gmungocJAL-1684 allow X in protein to map to untranslatable... commit | commitdiff | tree | snapshot
2015-03-13 gmungocJAL-1685 fixed commit | commitdiff | tree | snapshot
2015-03-12 gmungocJAL-1544 sequece now sequence commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-1684 better window size parameters; match up sequen... commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-1684 fix bug in AlignmentView constructor commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-1684 include JMOL jar for applet commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-1684 fix jars list, parameters for new example commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-845 start cDNA consensus on 'add alignment' (as... commit | commitdiff | tree | snapshot
2015-03-11 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-1685 further tests features/JAL-845splitPaneMergeDevelop commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-845 smarter test for 'mappability' when adding... commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-1421 changed Vector to List<String> for protein... commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-1685 tests added for ambiguity codes (including... commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-845 cDNA mapping: select on sequence translation... commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-845 handle no profile without NPE! commit | commitdiff | tree | snapshot
2015-03-11 gmungocJAL-1684 applet example for SplitFrame view of cDNA... commit | commitdiff | tree | snapshot
2015-03-10 gmungocJAL-1680 group consensus speeded up with a different... commit | commitdiff | tree | snapshot
2015-03-10 gmungocJAL-1681 show cDNA consensus on protein alignment ... commit | commitdiff | tree | snapshot
2015-03-09 Jim ProcterMerge branch 'features/JAL-1565_jpred4' into develop commit | commitdiff | tree | snapshot
2015-03-09 Jim ProcterJAL-1565 loading a concise file causes insertions to... commit | commitdiff | tree | snapshot
2015-03-06 Charles OfoegbuJAL-1668 added filtering and sorting capabilites commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterMerge branch 'features/JAL-845splitPaneMergeDevelop... commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterMerge branch 'develop' into features/JAL-845splitPaneMe... commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterJAL-1683 bump version for r2.8.3 branch commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff | tree | snapshot
2015-03-06 Jim Procterreassign features already created/documented for 2... commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterMerge commit '6797d65989b01c8fa5bdeaf6a66e35279b66a7f7... commit | commitdiff | tree | snapshot
2015-03-06 Charles OfoegbuJAL-1667 refactoring to support JAL-1668 commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1213 JAL-1395 add Jmol to JalviewLite classpath... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in... commit | commitdiff | tree | snapshot
2015-03-05 gmungocMerge branch 'develop' into features/JAL-845splitPaneMe... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1643 add quaqua libs as OSX specific resources bug/JAL-1643_File-chooser-improvement commit | commitdiff | tree | snapshot
2015-03-05 gmungocJAL-845 minor tidy / tests / javadoc tweaks commit | commitdiff | tree | snapshot
2015-03-05 gmungocJAL-1270 tests added commit | commitdiff | tree | snapshot
2015-03-04 Charles OfoegbuJAL-1668 First version JAL-1668 commit | commitdiff | tree | snapshot
2015-03-04 gmungocJAL-845 bug fixes correcting linked editing commit | commitdiff | tree | snapshot
2015-03-03 gmungocJAL-845 refactor / typo fix commit | commitdiff | tree | snapshot
2015-03-03 gmungocJAL-845 implement alignment of protein to match cDNA... commit | commitdiff | tree | snapshot
2015-03-03 gmungocJAL-1452 nucleotide/protein default colour; JAL-845... commit | commitdiff | tree | snapshot
2015-03-02 Charles Ofoegbuhouse keeping commit | commitdiff | tree | snapshot
2015-02-27 Jim ProcterMerge branch 'bug/addcustomlaunchdesktopparams' into... commit | commitdiff | tree | snapshot
2015-02-27 Jim ProcterJAL-1678 - patch to make sure we only compare positions... commit | commitdiff | tree | snapshot
2015-02-27 Jim Procterfix for JAL-1678 commit | commitdiff | tree | snapshot
2015-02-27 gmungocJAL-1452 distinct colour preferences for nucleotide... commit | commitdiff | tree | snapshot
2015-02-27 gmungocJAL-845 SplitFrame for "show product" and after alignin... commit | commitdiff | tree | snapshot
2015-02-26 Charles OfoegbuJAL-1667 PDBe Search Interface implementation commit | commitdiff | tree | snapshot
2015-02-25 gmungocJAL-1677 commenting use of AlignViewport.gatherViewsHere commit | commitdiff | tree | snapshot
2015-02-24 gmungocJAL-1677 Castor source changes commit | commitdiff | tree | snapshot
2015-02-24 gmungocJAL-845 set top and bottom seq id widths the same commit | commitdiff | tree | snapshot
2015-02-24 gmungocJAL-1677 save/restore SplitFrame to Jalview project commit | commitdiff | tree | snapshot
2015-02-23 gmungocJAL-845 repaint of complementary selection (applet) commit | commitdiff | tree | snapshot
2015-02-23 gmungocJAL-1619 split frame now offered in applet 'input from... commit | commitdiff | tree | snapshot
2015-02-20 gmungocJAL-1673 additional test (and trim of PDB resnum value) commit | commitdiff | tree | snapshot
2015-02-20 gmungocJAL-1675 correct highlighting in Chimera for mouseover... commit | commitdiff | tree | snapshot
2015-02-20 gmungocJAL-1665 create dataset sequences in applet commit | commitdiff | tree | snapshot
2015-02-20 gmungocJAL-1674 update both status bars when mousing over... commit | commitdiff | tree | snapshot
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor commit | commitdiff | tree | snapshot
2015-02-19 gmungocJAL-845 applet colour by tree; translate as cDNA; pull... commit | commitdiff | tree | snapshot
2015-02-13 gmungocJAL-845 first rough applet SplitFrame (add parameter... commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 added to 2.9 release notes commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 document changed behaviour commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 forgot to remove empty test commit | commitdiff | tree | snapshot
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