jalview.git
2012-05-08 jproctergroovy tools update Tcoffee_JAL-1065
2012-05-04 jprocterMerge branch 'test_paolo_JAL-1065' into Tcoffee_JAL...
2012-05-04 jprocterscrubbed classpath. again.
2012-05-04 jprocterjavadoc
2012-05-04 jprocterJAL-1065 JAL-1066 - refactored tcoffee score-> jalview...
2012-05-04 jprocterJAL-1065 JAL-1066 generic 'annotation collection update...
2012-05-04 jprocterJAL-1065 JAL-1066 - use direct object reference rather...
2012-05-04 jprocterJAL-1066 JAL-968 common interface for objects that...
2012-04-10 Paolo Di TommasoJAL-1065 + JAL-1066 + JAL-1067 - Added T-Coffee score...
2012-04-10 jprocterMerge branch 'Tcoffee_JAL-1065' of https://source.jalvi...
2012-04-09 Paolo Di TommasoJAL-1065 - Visualize T-Coffee quality scores for an...
2012-04-09 Paolo Di TommasoJAL-1066 - T-Coffee color scheme + signature change...
2012-04-09 Paolo Di TommasoJAL-1067 - T-Coffee score file reader
2012-04-09 Paolo Di TommasoJAL-1067 - T-Coffee score file parser
2012-02-12 Jim Procter(JAL-1016) noted position where race condition occurs
2012-02-12 Jim Procter(JAL-1022) ensure all Jmol model filenames are normalis...
2012-02-12 Jim Procter(JAL-1022) reverted to original strategy of escaping...
2012-02-12 Jim Procter(JAL-1050) ensure all filenames passed in to the load...
2012-02-12 Jim Procter(JAL-1025 JAL-1022) File based equivalence used to...
2012-02-12 Jim Procter(JAL-1049) only store state reference for sequence...
2012-02-12 Jim ProcterJAL-1025 JAL-1022 use File based equivalence to map...
2012-02-12 Jim ProcterJAL-715 - remove platform dependent includes
2012-01-11 jprocterMerge branch 'JAL-1023_viewall2structsw7' into Release_...
2012-01-11 jprocterremoved empty lines and fields in manifest like:
2011-12-08 jprocter(JAL-1023) ensure filename is properly escaped before...
2011-12-08 jprocterremove commented lines
2011-12-08 jproctersimple escape utility class for JAL-1023 patch
2011-11-21 jprocterMerge branch 'JAL-368_dragabovedesktop' into Release_2_...
2011-11-21 jprocter(JAL-368) ensure window never gets a negative Y coordin...
2011-11-20 jprocterMerge branch 'patch_JAL-1004' into Release_2_7_Branch
2011-11-20 jprocter(JAL-1004) add mouse listener to internal panel
2011-11-09 jprocterMerge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch
2011-11-09 jprocter(JAL-986) rendering to imageMap counts as rendering...
2011-11-09 jprocterMerge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch
2011-11-09 jprocter(JAL-985,JAL-986) documentation and tooltips
2011-11-09 jprocter(JAL-985,JAL-986) allow different ID margin calculation...
2011-11-09 jprocter(JAL-985,JAL-986) preference widgets for settings
2011-11-09 jprocter(JAL-985,JAL-986) preferences documentation
2011-11-09 jprocter(JAL-986) getter for integer user preference properties
2011-11-09 jprocter(JAL-980) jmol classpath patch
2011-11-04 jprocterMerge branch 'Release_2_7_branch'
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into Release_2_7_Branch
2011-11-04 jprocter(JAL-980) patch netbeans and installAnywhere builds
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into Release_2_7_Branch
2011-11-04 jprocter(JAL-980) use proper release number for Jmol libs ...
2011-11-04 jprocter(JAL-980,JAL-982) - applet console only allows console...
2011-11-04 jprocter(JAL-980) update binding for refactored Jmol constants...
2011-11-04 jprocter(JAL-980) update Jmol library to 12.2.16452 (built...
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade...
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups...
2011-10-21 jprocter(JAL-962) allow group visibility to be specified before...
2011-10-03 jprocterMerge branch 'Release_2_7_Branch'
2011-10-03 jprocterredact previous commit - fileassociation tag not allowe...
2011-10-03 jprocterremoved unnecessary parameters and changed alignment...
2011-10-03 jproctercompile swingreader component for java 1.5 (JAL-948)
2011-09-28 jprocterMerge branch 'Release_2_7_Branch' Release_2_7
2011-09-28 jprocterjnlps with and without file associations for default...
2011-09-28 jprocterbroken link. rearranged opening pg
2011-09-27 jproctertypo
2011-09-27 jprocterswitch to git release building
2011-09-27 jprocterpatch name, reference and URL for Multi-Harmony : JAL-724
2011-09-27 jprocterensure server errors return a URL and response document...
2011-09-27 jprocteruse jalview properties preference to enable RSBS editor...
2011-09-27 jproctersame overzeaolous logic (JAL-915)
2011-09-27 jprocterstart of Release 2.7
2011-09-27 jprocterJAL-944 - replaced stale PFAM links for 2.7 release...
2011-09-27 jprocterbackout overzealous logic disabling feature links in...
2011-09-27 jprocterNPE fix
2011-09-27 jprocterapply version 2.7 copyright
2011-09-26 jprocterexclude build artefacts from repository
2011-09-26 jprocterupdated documentation table of contents, menus and...
2011-09-26 jprocterdocumentation for news reader (JAL-943)
2011-09-26 jproctertweak installer with IA2010 - fixes installerObjects...
2011-09-26 jprocterfix jar dependency in InstallAnywhere
2011-09-26 jproctertidying classpath and fixing InstallAnywhere build
2011-09-26 jproctertweaked dialog layout. should consider refactoring
2011-09-26 jprocteradd new dependencies for 2.7 release
2011-09-26 jproctermake news window a modal dialog on the jalview desktop...
2011-09-26 jprocteravoid deprecation and ensure dialog close event is...
2011-09-25 jprocterorganise imports
2011-09-25 jproctermore focus fixing (JAL-943)
2011-09-25 jprocterfix logic to ensure first check for news is correct...
2011-09-23 jproctertry even harder to get focus - for benefit of windows...
2011-09-23 jprocterensure blog window gets put to front after dialogs...
2011-09-23 jprocterdebugged example file again - old version had view...
2011-09-22 jprocterrefactor and remove excess imports (JAL-943)
2011-09-22 jprocterjalview rss reader based on jswingreader (JAL-943)
2011-09-20 jprocterhelp documentation for Jalview 2.7
2011-09-16 jprocterJAL-747 - made warning message friendlier and more...
2011-09-16 jprocterfix for JAL-895 - new exampleFile_2_7.jar and logic...
2011-09-16 jprocternumerically ataxic comments.
2011-09-16 jprocterJAL-574 added option to enable/disable 'follow selectio...
2011-09-16 jprocterJAL-940 - removed legacy service options from preferenc...
2011-09-16 jprocterJAL-468 typo and label length in dialog
2011-09-16 jprocterpatch for JAL-935 - warning messages raised when alignm...
2011-09-16 jprocterJAL-468 JAL-936 sort alignment by tree and autosort...
2011-09-16 jproctertweak english
2011-09-15 jprocterdocumentation for new preferences (JAL-234 and web...
2011-09-15 jprocterdocumentation for JAL-234
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