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jalview.git
2015-07-23 Jim ProcterJAL-1819 commented out debugging message to stderr bug/JAL-1819_isNaN commit | commitdiff | tree | snapshot
2015-07-23 Jim ProcterJAL-1551 JAL-1819 formatting/imports commit | commitdiff | tree | snapshot
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! commit | commitdiff | tree | snapshot
2015-07-08 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-07-08 gmungocJAL-1598 replaced faulty regex, amended Varna call... commit | commitdiff | tree | snapshot
2015-07-08 tcofoegbuJAL-1641 biojson documentation with docson commit | commitdiff | tree | snapshot
2015-07-07 tcofoegbuJAL-1769 fixed output to jalview (.jpv) file in headles... commit | commitdiff | tree | snapshot
2015-07-07 tcofoegbuJAL-1805 test envirionment separation commit | commitdiff | tree | snapshot
2015-07-06 tcofoegbuMerge branch 'features/1769_headless-mode-test' into... commit | commitdiff | tree | snapshot
2015-07-06 tcofoegbuJAL-1641 added json schema for jalview JSON model,... commit | commitdiff | tree | snapshot
2015-07-06 tcofoegbuJAL-1769 fixed headless execution mode and created... commit | commitdiff | tree | snapshot
2015-07-06 gmungocJAL-1081 unit tests added commit | commitdiff | tree | snapshot
2015-07-06 gmungocJAL-1782 refactored test to ensure it passes in TestNG commit | commitdiff | tree | snapshot
2015-07-06 gmungocJAL-1421 generics used for leaner safer code commit | commitdiff | tree | snapshot
2015-07-06 gmungocJAL-1799 tweaked calculation for applet, now showing... commit | commitdiff | tree | snapshot
2015-07-06 gmungocJAL-1799 equivalent logic in applet commit | commitdiff | tree | snapshot
2015-07-03 gmungocJAL-892 jnlp, installAnywhere, build, licence reference... features/JAL-892varnaToProject commit | commitdiff | tree | snapshot
2015-07-03 gmungocMerge branch 'develop' into features/JAL-892varnaToProject commit | commitdiff | tree | snapshot
2015-07-03 gmungocJAL-892 1 second delay for correct initial rendering... commit | commitdiff | tree | snapshot
2015-07-02 tcofoegbuMerge branch 'bug/JAL-1443_loading-empty-file' into... commit | commitdiff | tree | snapshot
2015-07-02 tcofoegbuJAL-1443 data validation for empty content before loadi... commit | commitdiff | tree | snapshot
2015-07-02 gmungocJAL-1677 check all response lines when parsing REST... commit | commitdiff | tree | snapshot
2015-07-01 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-07-01 gmungocJAL-1681 more condensed tooltip where codons share... commit | commitdiff | tree | snapshot
2015-07-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-07-01 tcofoegbuhouse keeping commit | commitdiff | tree | snapshot
2015-07-01 gmungocJAL-1802 explanatory comment added commit | commitdiff | tree | snapshot
2015-07-01 gmungocJAL-1802 handle slide sequences edits in split frame... commit | commitdiff | tree | snapshot
2015-07-01 gmungocJAL-1799 deduct more space for decorators on Windows commit | commitdiff | tree | snapshot
2015-07-01 gmungocJAL-1619 align the added sequences to match what they... commit | commitdiff | tree | snapshot
2015-06-30 tcofoegbuMerge branch 'features/JAL-1641_JSON-tests-and-docs... commit | commitdiff | tree | snapshot
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring commit | commitdiff | tree | snapshot
2015-06-30 gmungocJAL-1691 trackpad scrolling goes to full width even... commit | commitdiff | tree | snapshot
2015-06-29 gmungocJAL-1799 adjusted annotation height calculation commit | commitdiff | tree | snapshot
2015-06-26 tcofoegbuJAL-1641 fixed broken functionalities after refactor commit | commitdiff | tree | snapshot
2015-06-26 gmungocJAL-1782 BeforeMethod added to fix test in NG commit | commitdiff | tree | snapshot
2015-06-26 gmungocMerge branch 'develop' into features/JAL-892varnaToProject commit | commitdiff | tree | snapshot
2015-06-26 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-06-26 tcofoegbuJAL-1780 improvement to ensure export settings dialog... commit | commitdiff | tree | snapshot
2015-06-25 Jim ProcterJAL-1691 avoid NPE when original split frame has been... commit | commitdiff | tree | snapshot
2015-06-25 Jim ProcterJAL-1780 JAL-653 JAL-1892 brackets in wrong place broke... commit | commitdiff | tree | snapshot
2015-06-24 Jim ProcterMerge branch 'features/JAL-1370_patchshowunconserved... commit | commitdiff | tree | snapshot
2015-06-24 Jim ProcterJAL-1790 fix: javac.source=1.7 and javac.target=1.7... commit | commitdiff | tree | snapshot
2015-06-24 Jim ProcterJAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation commit | commitdiff | tree | snapshot
2015-06-24 Jim ProcterMerge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892... commit | commitdiff | tree | snapshot
2015-06-23 Jim ProcterJAL-1780 JAL-653 jim forgot to put the conditional... merge/develop_JAL-1780_JAL-653_JAL-1892 commit | commitdiff | tree | snapshot
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac... commit | commitdiff | tree | snapshot
2015-06-22 Jim ProcterJAL-1270 fix logic in stockholm test allowing annotatio... commit | commitdiff | tree | snapshot
2015-06-22 Jim ProcterJAL-653 JAL-1780 JAL-1140 added RNAML example alignment... commit | commitdiff | tree | snapshot
2015-06-22 Jim ProcterJAL-653 JAL-1780 dropped unnecessary refs commit | commitdiff | tree | snapshot
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... commit | commitdiff | tree | snapshot
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports commit | commitdiff | tree | snapshot
2015-06-22 gmungocJAL-892 tidy Varna panel names; JAL-1789 simplified... commit | commitdiff | tree | snapshot
2015-06-22 gmungocJAL-893 upgrade to VARNAv3-93.jar commit | commitdiff | tree | snapshot
2015-06-19 Jim ProcterJAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfil... commit | commitdiff | tree | snapshot
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports commit | commitdiff | tree | snapshot
2015-06-19 gmungocJAL-892 check viewer is linked to alignment panel on... commit | commitdiff | tree | snapshot
2015-06-19 Jim ProcterJAL-653 JAL-1780 minimise call rate now av.hasHiddenRow... commit | commitdiff | tree | snapshot
2015-06-19 Jim ProcterJAL-653 JAL-1780 dropped av.setHasHiddenRows() and... commit | commitdiff | tree | snapshot
2015-06-19 tcofoegbuJAL-1270 test suits import order refactor features/JAL-1270_JUnit-to-TestNG features/JAL-1782_JUnit-to-TestNG commit | commitdiff | tree | snapshot
2015-06-19 Jim ProcterJAL-1780 JAL-653 organise imports commit | commitdiff | tree | snapshot
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring commit | commitdiff | tree | snapshot
2015-06-18 Jim ProcterJAL-653 patch broken test code - test still not passing commit | commitdiff | tree | snapshot
2015-06-18 Jim ProcterJAL-653 JAL-1780 JAL-1543 javadoc and comment about... commit | commitdiff | tree | snapshot
2015-06-18 Jim ProcterJAL-653 JAL-1780 javadoc for FeatureRenderer prior... commit | commitdiff | tree | snapshot
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference... commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-1270 test added commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-1544 typos in comments commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-892 JAL-1779 save/restore Varna viewer to/from... commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-1695 default ENABLE_SPLIT_FRAME to true for desktop commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-892 schema changes (rnaViewer) for save Varna to... commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-1781 annotation.sequenceRef now sequence id not... features/JAL-1781annotationXmlIds commit | commitdiff | tree | snapshot
2015-06-17 Jim ProcterJAL-1784 minimise data duplication, and report out... commit | commitdiff | tree | snapshot
2015-06-17 Jim ProcterJAL-1784 refactor parse method to directly parse FilePa... commit | commitdiff | tree | snapshot
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into... commit | commitdiff | tree | snapshot
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments commit | commitdiff | tree | snapshot
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-1780_export... commit | commitdiff | tree | snapshot
2015-06-17 Jim ProcterJAL-1783 add java 1.7 and 1.8 class numbers commit | commitdiff | tree | snapshot
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-1780_export... commit | commitdiff | tree | snapshot
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile commit | commitdiff | tree | snapshot
2015-06-17 tcofoegbuJAL-1780 Export settings for flatfile output commit | commitdiff | tree | snapshot
2015-06-17 gmungocJAL-1588 restore ChimeraViewFrame geometry as well commit | commitdiff | tree | snapshot
2015-06-17 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-06-17 gmungocJAL-1778 reinstated this.ssm to handle 'close all windo... commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1665 patch for regression: failing jalview.ws.jabaw... commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 patch for regression from Anne Menard’s pseudo... commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 patch regression bug when displayChar is null... commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop commit | commitdiff | tree | snapshot
2015-06-15 Jim Procterfix for JAL-1775 (and reorganise imports) commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 test demonstrating bug commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 FileLoader javadoc commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 fix regression from commit 70f9c4700f20a8fa57e... commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterMerge branch 'develop' into bug/JAL-1775 commit | commitdiff | tree | snapshot
2015-06-15 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-06-15 gmungocJAL-1778 deregister as a listener when panel closed commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 fix broken test due to missing file (RF0031_un... commit | commitdiff | tree | snapshot
2015-06-15 tcofoegbuJAL-1641 clean up commit | commitdiff | tree | snapshot
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